Wall clock time and date at job start Mon Mar 30 2020 02:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46938 * 2 1 4 4 C 1.53000 * 109.47211 * 120.00214 * 2 1 3 5 5 H 1.08998 * 109.46824 * 295.85913 * 4 2 1 6 6 C 1.50700 * 109.46918 * 175.85667 * 4 2 1 7 7 H 1.07997 * 120.00095 * 305.12810 * 6 4 2 8 8 C 1.37880 * 119.99655 * 125.12723 * 6 4 2 9 9 N 1.31508 * 120.00030 * 175.34913 * 8 6 4 10 10 Si 1.86801 * 119.99954 * 355.34536 * 8 6 4 11 11 H 1.48496 * 109.47510 * 275.52669 * 10 8 6 12 12 H 1.48501 * 109.47212 * 35.53296 * 10 8 6 13 13 H 1.48511 * 109.46866 * 155.52924 * 10 8 6 14 14 C 1.52999 * 109.47005 * 55.85670 * 4 2 1 15 15 H 1.09003 * 110.36073 * 305.70249 * 14 4 2 16 16 C 1.54276 * 110.39969 * 183.37901 * 14 4 2 17 17 C 1.54018 * 108.83998 * 213.34902 * 16 14 4 18 18 C 1.55138 * 106.98696 * 47.10209 * 17 16 14 19 19 S 1.83096 * 110.40165 * 68.02592 * 14 4 2 20 20 H 1.08995 * 109.47269 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47150 * 299.99983 * 1 2 3 22 22 H 1.09002 * 109.46882 * 59.99491 * 1 2 3 23 23 H 1.08997 * 109.46676 * 240.00051 * 2 1 3 24 24 H 1.08998 * 109.46883 * 185.04133 * 3 2 1 25 25 H 1.08996 * 109.47114 * 305.04004 * 3 2 1 26 26 H 1.09001 * 109.47188 * 65.04298 * 3 2 1 27 27 H 0.96996 * 120.00419 * 180.02562 * 9 8 6 28 28 H 1.09002 * 109.60760 * 333.17317 * 16 14 4 29 29 H 1.08996 * 109.60991 * 93.33492 * 16 14 4 30 30 H 1.09004 * 109.89069 * 287.74096 * 17 16 14 31 31 H 1.08998 * 110.01517 * 166.53225 * 17 16 14 32 32 H 1.09007 * 110.85811 * 199.76166 * 18 17 16 33 33 H 1.09001 * 111.03131 * 76.19432 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.7386 -0.1664 2.1376 6 6 3.5436 -0.8108 1.1989 7 1 4.0297 -1.2550 0.3429 8 6 4.2984 -0.3255 2.2457 9 7 5.6038 -0.4853 2.2445 10 14 3.4669 0.5589 3.6655 11 1 3.2746 1.9887 3.3136 12 1 2.1471 -0.0668 3.9336 13 1 4.3182 0.4578 4.8782 14 6 1.4468 -2.1306 1.3023 15 1 0.3595 -2.0870 1.2375 16 6 1.8800 -2.8479 2.5976 17 6 2.0361 -4.3519 2.3048 18 6 2.8604 -4.4758 0.9964 19 16 2.1260 -3.1605 -0.0506 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 3.1262 1.4438 -0.0903 25 1 1.6048 1.9817 -0.8414 26 1 1.7523 1.9296 0.9317 27 1 6.1348 -0.1442 2.9811 28 1 2.8319 -2.4418 2.9399 29 1 1.1237 -2.6997 3.3684 30 1 1.0549 -4.8075 2.1712 31 1 2.5639 -4.8388 3.1248 32 1 2.7214 -5.4567 0.5415 33 1 3.9170 -4.2811 1.1798 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260446545.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:28 Heat of formation + Delta-G solvation = -25.835752 kcal Electronic energy + Delta-G solvation = -13356.392829 eV Core-core repulsion = 11314.275128 eV Total energy + Delta-G solvation = -2042.117701 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -37.09869 -34.50612 -32.19948 -29.79242 -27.08187 -26.03066 -23.86424 -21.95580 -19.85181 -18.77503 -17.13192 -15.46927 -14.95775 -14.32479 -13.85114 -13.51637 -13.10637 -12.72180 -12.35739 -12.30916 -11.97085 -11.57414 -11.27923 -10.93526 -10.90509 -10.82106 -10.52556 -10.21504 -10.07084 -9.66114 -9.57922 -9.39014 -9.11449 -8.65591 -8.45362 -6.57624 -5.99180 -3.96254 2.76866 3.25952 3.33114 3.35390 3.38675 4.43444 5.24244 5.28537 5.34196 5.60616 5.73324 5.84506 5.88994 5.99774 6.07384 6.10093 6.25214 6.31714 6.38459 6.48526 6.51552 6.56362 6.66243 6.82334 6.92174 7.03656 7.19680 7.35825 7.41698 7.82256 8.65105 9.17037 9.62750 11.12245 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.023693 B = 0.017000 C = 0.012598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.505731 B = 1646.633964 C = 2222.039123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.086 4.086 3 C -0.131 4.131 4 C 0.022 3.978 5 H 0.043 0.957 6 C -0.482 4.482 7 H 0.089 0.911 8 C 0.071 3.929 9 N -0.902 5.902 10 Si 0.858 3.142 11 H -0.276 1.276 12 H -0.265 1.265 13 H -0.293 1.293 14 C -0.020 4.020 15 H 0.073 0.927 16 C -0.128 4.128 17 C -0.121 4.121 18 C -0.070 4.070 19 S -0.290 6.290 20 H 0.050 0.950 21 H 0.043 0.957 22 H 0.040 0.960 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.032 0.968 26 H 0.037 0.963 27 H 0.261 0.739 28 H 0.094 0.906 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.266 -3.589 0.015 9.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.105 4.105 3 C -0.188 4.188 4 C 0.002 3.998 5 H 0.061 0.939 6 C -0.520 4.520 7 H 0.107 0.893 8 C -0.129 4.129 9 N -0.540 5.540 10 Si 0.687 3.313 11 H -0.202 1.202 12 H -0.191 1.191 13 H -0.219 1.219 14 C -0.149 4.149 15 H 0.091 0.909 16 C -0.166 4.166 17 C -0.159 4.159 18 C -0.218 4.218 19 S -0.064 6.064 20 H 0.069 0.931 21 H 0.062 0.938 22 H 0.059 0.941 23 H 0.086 0.914 24 H 0.087 0.913 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.113 0.887 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.115 -3.421 -1.066 8.871 hybrid contribution -0.293 0.420 2.194 2.253 sum -8.408 -3.002 1.128 8.999 Atomic orbital electron populations 1.22015 0.98063 1.00652 1.00121 1.21193 0.92356 0.96330 1.00615 1.21671 1.02454 0.95761 0.98959 1.19424 0.97287 0.89050 0.94066 0.93944 1.21072 0.87937 1.37451 1.05571 0.89259 1.25071 0.94639 0.95834 0.97379 1.69889 1.04888 1.46827 1.32441 0.87202 0.79740 0.81285 0.83102 1.20196 1.19065 1.21935 1.24133 0.99139 0.99359 0.92225 0.90918 1.22452 1.03729 0.93379 0.97081 1.22492 0.99377 0.97401 0.96668 1.24045 1.02741 0.98391 0.96621 1.86890 1.73843 1.27555 1.18094 0.93104 0.93783 0.94075 0.91419 0.91315 0.94920 0.94391 0.92936 0.88738 0.92188 0.91773 0.91137 0.89746 0.89200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 8.75 37.16 0.33 -2.27 16 2 C -0.09 -1.74 2.31 -90.62 -0.21 -1.95 16 3 C -0.13 -2.61 8.91 37.16 0.33 -2.28 16 4 C 0.02 0.49 1.17 -91.77 -0.11 0.38 16 5 H 0.04 0.98 4.52 -51.93 -0.23 0.74 16 6 C -0.48 -12.53 6.07 -34.44 -0.21 -12.74 16 7 H 0.09 2.62 7.46 -52.49 -0.39 2.23 16 8 C 0.07 1.94 4.98 -17.82 -0.09 1.85 16 9 N -0.90 -26.55 13.96 55.43 0.77 -25.78 16 10 Si 0.86 20.74 26.64 -169.99 -4.53 16.21 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 12 H -0.27 -6.07 6.41 56.52 0.36 -5.71 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 14 C -0.02 -0.40 2.70 -26.06 -0.07 -0.47 16 15 H 0.07 1.36 6.10 -51.93 -0.32 1.04 16 16 C -0.13 -2.45 5.82 -25.53 -0.15 -2.60 16 17 C -0.12 -1.96 6.46 -25.07 -0.16 -2.12 16 18 C -0.07 -1.22 7.38 38.29 0.28 -0.94 16 19 S -0.29 -5.85 20.44 -107.50 -2.20 -8.05 16 20 H 0.05 0.85 6.24 -51.93 -0.32 0.52 16 21 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.07 1.46 7.49 -51.93 -0.39 1.07 16 24 H 0.07 1.51 7.52 -51.93 -0.39 1.12 16 25 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.09 2.10 5.88 -51.93 -0.31 1.80 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.08 1.26 8.14 -51.92 -0.42 0.84 16 33 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 LS Contribution 263.00 15.07 3.96 3.96 Total: -1.00 -27.80 263.00 -7.38 -35.18 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -5.33 Total: 1.61 kcal Atomic # 6 Polarization: -23.07 SS G_CDS: -0.06 Total: -23.13 kcal Atomic # 7 Polarization: -26.55 SS G_CDS: 0.77 Total: -25.78 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.53 Total: 16.21 kcal Atomic # 16 Polarization: -5.85 SS G_CDS: -2.20 Total: -8.05 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -27.80 -7.38 -35.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260446545.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.340 kcal (2) G-P(sol) polarization free energy of solvation -27.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds