Wall clock time and date at job start Mon Mar 30 2020 02:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46938 * 2 1 4 4 C 1.53000 * 109.47211 * 120.00214 * 2 1 3 5 5 H 1.08998 * 109.46824 * 295.85913 * 4 2 1 6 6 C 1.50700 * 109.46918 * 175.85667 * 4 2 1 7 7 H 1.07997 * 120.00095 * 305.12810 * 6 4 2 8 8 C 1.37880 * 119.99655 * 125.12723 * 6 4 2 9 9 N 1.31508 * 120.00030 * 175.34913 * 8 6 4 10 10 Si 1.86801 * 119.99954 * 355.34536 * 8 6 4 11 11 H 1.48496 * 109.47510 * 275.52669 * 10 8 6 12 12 H 1.48501 * 109.47212 * 35.53296 * 10 8 6 13 13 H 1.48511 * 109.46866 * 155.52924 * 10 8 6 14 14 C 1.52999 * 109.47005 * 55.85670 * 4 2 1 15 15 H 1.09003 * 110.36073 * 305.70249 * 14 4 2 16 16 C 1.54276 * 110.39969 * 183.37901 * 14 4 2 17 17 C 1.54018 * 108.83998 * 213.34902 * 16 14 4 18 18 C 1.55138 * 106.98696 * 47.10209 * 17 16 14 19 19 S 1.83096 * 110.40165 * 68.02592 * 14 4 2 20 20 H 1.08995 * 109.47269 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47150 * 299.99983 * 1 2 3 22 22 H 1.09002 * 109.46882 * 59.99491 * 1 2 3 23 23 H 1.08997 * 109.46676 * 240.00051 * 2 1 3 24 24 H 1.08998 * 109.46883 * 185.04133 * 3 2 1 25 25 H 1.08996 * 109.47114 * 305.04004 * 3 2 1 26 26 H 1.09001 * 109.47188 * 65.04298 * 3 2 1 27 27 H 0.96996 * 120.00419 * 180.02562 * 9 8 6 28 28 H 1.09002 * 109.60760 * 333.17317 * 16 14 4 29 29 H 1.08996 * 109.60991 * 93.33492 * 16 14 4 30 30 H 1.09004 * 109.89069 * 287.74096 * 17 16 14 31 31 H 1.08998 * 110.01517 * 166.53225 * 17 16 14 32 32 H 1.09007 * 110.85811 * 199.76166 * 18 17 16 33 33 H 1.09001 * 111.03131 * 76.19432 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.7386 -0.1664 2.1376 6 6 3.5436 -0.8108 1.1989 7 1 4.0297 -1.2550 0.3429 8 6 4.2984 -0.3255 2.2457 9 7 5.6038 -0.4853 2.2445 10 14 3.4669 0.5589 3.6655 11 1 3.2746 1.9887 3.3136 12 1 2.1471 -0.0668 3.9336 13 1 4.3182 0.4578 4.8782 14 6 1.4468 -2.1306 1.3023 15 1 0.3595 -2.0870 1.2375 16 6 1.8800 -2.8479 2.5976 17 6 2.0361 -4.3519 2.3048 18 6 2.8604 -4.4758 0.9964 19 16 2.1260 -3.1605 -0.0506 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 3.1262 1.4438 -0.0903 25 1 1.6048 1.9817 -0.8414 26 1 1.7523 1.9296 0.9317 27 1 6.1348 -0.1442 2.9811 28 1 2.8319 -2.4418 2.9399 29 1 1.1237 -2.6997 3.3684 30 1 1.0549 -4.8075 2.1712 31 1 2.5639 -4.8388 3.1248 32 1 2.7214 -5.4567 0.5415 33 1 3.9170 -4.2811 1.1798 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260446545.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:27 Heat of formation + Delta-G solvation = -40.959135 kcal Electronic energy + Delta-G solvation = -13357.048628 eV Core-core repulsion = 11314.275128 eV Total energy + Delta-G solvation = -2042.773500 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -38.75298 -35.96463 -34.23551 -31.40259 -28.76053 -27.58188 -25.57404 -23.55108 -21.35004 -20.47441 -19.13496 -17.08365 -16.48886 -16.15385 -15.41899 -15.13076 -14.68936 -14.61198 -13.97427 -13.84190 -13.61413 -13.08889 -12.77399 -12.73711 -12.49457 -12.25202 -12.11685 -11.79896 -11.68892 -11.56931 -11.19213 -11.07391 -10.89552 -10.53182 -10.32719 -8.26257 -8.04670 -6.10624 1.25335 1.34151 1.37280 1.43814 1.82224 2.41222 3.21157 3.86710 3.94262 4.15724 4.26087 4.31973 4.40792 4.57194 4.59305 4.71080 4.85236 4.90217 4.93453 5.00111 5.02971 5.06804 5.11990 5.24593 5.30745 5.46724 5.54325 5.70302 5.72899 5.86874 6.56143 6.99503 7.50897 9.03790 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.023693 B = 0.017000 C = 0.012598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.505731 B = 1646.633964 C = 2222.039123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 C -0.129 4.129 4 C 0.020 3.980 5 H 0.042 0.958 6 C -0.460 4.460 7 H 0.043 0.957 8 C 0.018 3.982 9 N -0.955 5.955 10 Si 0.912 3.088 11 H -0.273 1.273 12 H -0.238 1.238 13 H -0.299 1.299 14 C -0.016 4.016 15 H 0.098 0.902 16 C -0.134 4.134 17 C -0.112 4.112 18 C -0.062 4.062 19 S -0.335 6.335 20 H 0.056 0.944 21 H 0.055 0.945 22 H 0.059 0.941 23 H 0.048 0.952 24 H 0.034 0.966 25 H 0.060 0.940 26 H 0.041 0.959 27 H 0.258 0.742 28 H 0.057 0.943 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.115 0.885 33 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.182 -3.966 0.804 11.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.106 4.106 3 C -0.186 4.186 4 C 0.000 4.000 5 H 0.059 0.941 6 C -0.499 4.499 7 H 0.062 0.938 8 C -0.177 4.177 9 N -0.597 5.597 10 Si 0.738 3.262 11 H -0.199 1.199 12 H -0.162 1.162 13 H -0.226 1.226 14 C -0.144 4.144 15 H 0.116 0.884 16 C -0.172 4.172 17 C -0.150 4.150 18 C -0.210 4.210 19 S -0.109 6.109 20 H 0.075 0.925 21 H 0.074 0.926 22 H 0.078 0.922 23 H 0.066 0.934 24 H 0.053 0.947 25 H 0.079 0.921 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.103 0.897 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.133 0.867 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.063 -3.802 -0.288 11.702 hybrid contribution 0.663 0.492 1.842 2.018 sum -10.401 -3.310 1.554 11.025 Atomic orbital electron populations 1.21908 0.94809 1.01552 1.01699 1.21126 0.95087 0.95796 0.98590 1.21634 1.00398 0.96195 1.00380 1.19415 0.94555 0.91010 0.95013 0.94054 1.21077 0.90212 1.35246 1.03358 0.93825 1.25716 0.94880 0.96998 1.00118 1.70048 1.06731 1.49294 1.33602 0.86315 0.79838 0.80264 0.79791 1.19892 1.16207 1.22639 1.24068 1.00182 0.97685 0.92471 0.88442 1.22489 1.02447 0.95147 0.97126 1.22478 1.00755 0.95639 0.96135 1.24129 1.01188 0.98530 0.97155 1.87040 1.74329 1.29489 1.20036 0.92536 0.92586 0.92153 0.93401 0.94678 0.92092 0.94029 0.93326 0.92461 0.89675 0.88956 0.89274 0.86681 0.91921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.38 8.75 71.98 0.63 -3.75 16 2 C -0.09 -3.41 2.31 -10.79 -0.02 -3.43 16 3 C -0.13 -4.98 8.91 71.98 0.64 -4.33 16 4 C 0.02 0.88 1.17 -11.54 -0.01 0.86 16 5 H 0.04 1.81 4.52 -2.39 -0.01 1.80 16 6 C -0.46 -24.53 6.07 25.60 0.16 -24.38 16 7 H 0.04 2.69 7.46 -2.91 -0.02 2.67 16 8 C 0.02 1.01 4.98 84.66 0.42 1.44 16 9 N -0.95 -58.61 13.96 21.45 0.30 -58.31 16 10 Si 0.91 42.67 26.64 68.60 1.83 44.49 16 11 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 12 H -0.24 -10.02 6.41 99.48 0.64 -9.38 16 13 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 14 C -0.02 -0.59 2.70 31.03 0.08 -0.51 16 15 H 0.10 3.26 6.10 -2.39 -0.01 3.25 16 16 C -0.13 -4.77 5.82 31.37 0.18 -4.59 16 17 C -0.11 -3.27 6.46 31.67 0.20 -3.06 16 18 C -0.06 -2.09 7.38 72.72 0.54 -1.55 16 19 S -0.33 -13.28 20.44 -56.49 -1.15 -14.43 16 20 H 0.06 1.67 6.24 -2.39 -0.01 1.65 16 21 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 22 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.05 2.06 7.49 -2.39 -0.02 2.04 16 24 H 0.03 1.55 7.52 -2.39 -0.02 1.53 16 25 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 28 H 0.06 2.49 5.88 -2.39 -0.01 2.48 16 29 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 30 H 0.09 2.24 8.14 -2.39 -0.02 2.23 16 31 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.11 3.15 8.14 -2.38 -0.02 3.13 16 33 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -62.06 263.00 4.78 -57.28 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 0.99 Total: 14.27 kcal Atomic # 6 Polarization: -46.12 SS G_CDS: 2.82 Total: -43.30 kcal Atomic # 7 Polarization: -58.61 SS G_CDS: 0.30 Total: -58.31 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 1.83 Total: 44.49 kcal Atomic # 16 Polarization: -13.28 SS G_CDS: -1.15 Total: -14.43 kcal Total: -62.06 4.78 -57.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260446545.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.322 kcal (2) G-P(sol) polarization free energy of solvation -62.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds