Wall clock time and date at job start Mon Mar 30 2020 02:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47200 * 2 1 4 4 C 1.53000 * 109.47233 * 120.00232 * 2 1 3 5 5 H 1.08997 * 109.46991 * 55.81414 * 4 2 1 6 6 C 1.50692 * 109.46997 * 295.81422 * 4 2 1 7 7 H 1.08005 * 120.00447 * 304.54470 * 6 4 2 8 8 C 1.37886 * 120.00152 * 124.54553 * 6 4 2 9 9 N 1.31510 * 119.99509 * 9.93401 * 8 6 4 10 10 Si 1.86800 * 120.00241 * 189.93629 * 8 6 4 11 11 H 1.48499 * 109.46910 * 180.02562 * 10 8 6 12 12 H 1.48498 * 109.47121 * 59.99795 * 10 8 6 13 13 H 1.48501 * 109.46627 * 299.99904 * 10 8 6 14 14 C 1.53000 * 109.46784 * 175.81471 * 4 2 1 15 15 H 1.09001 * 110.75860 * 58.94804 * 14 4 2 16 16 C 1.55133 * 110.85413 * 182.66765 * 14 4 2 17 17 C 1.53861 * 106.90347 * 160.29594 * 16 14 4 18 18 C 1.54274 * 108.91826 * 312.74761 * 17 16 14 19 19 S 1.83087 * 104.65788 * 27.94941 * 18 17 16 20 20 H 1.08999 * 109.46827 * 305.34696 * 1 2 3 21 21 H 1.08995 * 109.47550 * 65.34359 * 1 2 3 22 22 H 1.08999 * 109.47279 * 185.34719 * 1 2 3 23 23 H 1.08998 * 109.46444 * 240.00308 * 2 1 3 24 24 H 1.08994 * 109.47458 * 62.71717 * 3 2 1 25 25 H 1.09000 * 109.47464 * 182.72178 * 3 2 1 26 26 H 1.09011 * 109.47130 * 302.71928 * 3 2 1 27 27 H 0.97003 * 120.00406 * 355.82889 * 9 8 6 28 28 H 1.09001 * 109.97839 * 279.65392 * 16 14 4 29 29 H 1.08999 * 109.97620 * 40.93360 * 16 14 4 30 30 H 1.08991 * 109.61076 * 192.82690 * 17 16 14 31 31 H 1.08997 * 109.46100 * 72.57399 * 17 16 14 32 32 H 1.09007 * 110.40116 * 269.15387 * 18 17 16 33 33 H 1.09003 * 110.49803 * 146.79744 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6167 -1.7250 1.2874 6 6 1.6242 0.0464 2.4774 7 1 1.8897 1.0884 2.5787 8 6 0.9046 -0.5814 3.4721 9 7 0.7486 -1.8870 3.4466 10 14 0.1515 0.4225 4.8557 11 1 -0.5653 -0.4821 5.7901 12 1 -0.8042 1.4077 4.2890 13 1 1.2258 1.1397 5.5882 14 6 3.5664 -0.8130 1.1976 15 1 4.0114 0.1803 1.1400 16 6 4.1140 -1.5987 2.4180 17 6 5.5310 -2.0700 2.0475 18 6 5.4969 -2.6979 0.6387 19 16 4.1109 -1.8554 -0.2106 20 1 -0.3633 0.5945 0.8382 21 1 -0.3634 0.4287 -0.9339 22 1 -0.3634 -1.0232 0.0958 23 1 1.8932 -0.5138 -0.8900 24 1 1.7170 1.9421 0.9133 25 1 3.1289 1.4429 -0.0488 26 1 1.6374 1.9702 -0.8647 27 1 1.0873 -2.4014 2.6972 28 1 4.1546 -0.9483 3.2918 29 1 3.4772 -2.4591 2.6232 30 1 5.8706 -2.8116 2.7704 31 1 6.2100 -1.2173 2.0516 32 1 5.3070 -3.7693 0.7047 33 1 6.4340 -2.5105 0.1145 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260446549.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:30 Heat of formation + Delta-G solvation = -46.517327 kcal Electronic energy + Delta-G solvation = -13235.923217 eV Core-core repulsion = 11192.908695 eV Total energy + Delta-G solvation = -2043.014521 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.83500 -36.18048 -34.20576 -31.16432 -27.90585 -27.62095 -25.97408 -23.89386 -21.55467 -20.90018 -18.18820 -17.46356 -16.50161 -16.00553 -15.58834 -15.32215 -14.83487 -14.31658 -14.29927 -13.77177 -13.41119 -12.87162 -12.71265 -12.61723 -12.47659 -12.38158 -12.09520 -11.92704 -11.74523 -11.63610 -11.23455 -10.96674 -10.93741 -10.42943 -10.09811 -8.60346 -8.44188 -6.11772 1.05202 1.57542 1.61924 1.66812 1.81375 2.63279 3.32705 3.76983 3.84734 4.11593 4.15688 4.30244 4.32450 4.47239 4.50478 4.69004 4.76794 4.83945 4.89790 5.00538 5.07016 5.08377 5.14774 5.24920 5.32626 5.46883 5.52807 5.61728 5.72480 6.24807 6.35973 6.80803 7.63546 8.92782 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.028684 B = 0.012892 C = 0.010147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.915304 B = 2171.437520 C = 2758.692877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.086 4.086 3 C -0.126 4.126 4 C 0.051 3.949 5 H 0.017 0.983 6 C -0.572 4.572 7 H 0.050 0.950 8 C -0.017 4.017 9 N -0.937 5.937 10 Si 1.098 2.902 11 H -0.293 1.293 12 H -0.275 1.275 13 H -0.273 1.273 14 C 0.004 3.996 15 H 0.078 0.922 16 C -0.104 4.104 17 C -0.122 4.122 18 C -0.059 4.059 19 S -0.379 6.379 20 H 0.047 0.953 21 H 0.056 0.944 22 H 0.024 0.976 23 H 0.040 0.960 24 H 0.053 0.947 25 H 0.043 0.957 26 H 0.052 0.948 27 H 0.258 0.742 28 H 0.069 0.931 29 H 0.044 0.956 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.096 2.261 -3.253 8.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.105 4.105 3 C -0.183 4.183 4 C 0.030 3.970 5 H 0.035 0.965 6 C -0.612 4.612 7 H 0.069 0.931 8 C -0.216 4.216 9 N -0.575 5.575 10 Si 0.923 3.077 11 H -0.219 1.219 12 H -0.201 1.201 13 H -0.198 1.198 14 C -0.124 4.124 15 H 0.096 0.904 16 C -0.143 4.143 17 C -0.161 4.161 18 C -0.207 4.207 19 S -0.152 6.152 20 H 0.066 0.934 21 H 0.075 0.925 22 H 0.043 0.957 23 H 0.058 0.942 24 H 0.072 0.928 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.063 0.937 30 H 0.113 0.887 31 H 0.101 0.899 32 H 0.110 0.890 33 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 5.882 2.012 -2.997 6.901 hybrid contribution 1.047 -0.064 -0.286 1.088 sum 6.929 1.948 -3.282 7.911 Atomic orbital electron populations 1.21541 0.95939 0.99766 1.00476 1.21132 0.95527 0.96794 0.97054 1.21686 0.99666 0.95884 1.01101 1.18896 0.88294 0.95759 0.94055 0.96466 1.21934 1.36660 0.97752 1.04831 0.93137 1.26793 0.95424 0.96837 1.02574 1.70936 1.48021 1.06614 1.31964 0.83156 0.76560 0.74171 0.73853 1.21917 1.20051 1.19850 1.24416 1.01168 0.96869 0.89946 0.90363 1.22342 0.95283 0.98987 0.97731 1.22311 0.96700 1.01622 0.95424 1.23987 0.97817 1.01780 0.97105 1.87465 1.43703 1.55750 1.28330 0.93374 0.92469 0.95720 0.94150 0.92782 0.93836 0.92852 0.92945 0.91236 0.93692 0.88741 0.89935 0.89049 0.87050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.00 8.91 71.98 0.64 -4.36 16 2 C -0.09 -3.66 2.60 -10.80 -0.03 -3.69 16 3 C -0.13 -4.77 8.61 71.98 0.62 -4.15 16 4 C 0.05 2.39 1.41 -11.54 -0.02 2.37 16 5 H 0.02 0.94 5.81 -2.39 -0.01 0.92 16 6 C -0.57 -28.94 6.03 25.60 0.15 -28.79 16 7 H 0.05 2.55 6.44 -2.91 -0.02 2.53 16 8 C -0.02 -0.89 5.44 84.66 0.46 -0.42 16 9 N -0.94 -54.17 13.64 21.45 0.29 -53.87 16 10 Si 1.10 48.15 29.92 68.60 2.05 50.20 16 11 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 12 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 13 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 14 C 0.00 0.16 2.45 31.33 0.08 0.24 16 15 H 0.08 3.25 6.64 -2.39 -0.02 3.24 16 16 C -0.10 -4.13 5.34 31.62 0.17 -3.96 16 17 C -0.12 -3.59 6.39 31.32 0.20 -3.39 16 18 C -0.06 -1.72 7.33 72.41 0.53 -1.19 16 19 S -0.38 -14.53 21.56 -56.49 -1.22 -15.74 16 20 H 0.05 2.11 7.53 -2.39 -0.02 2.09 16 21 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 22 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 23 H 0.04 1.73 7.09 -2.39 -0.02 1.71 16 24 H 0.05 2.15 6.27 -2.39 -0.01 2.13 16 25 H 0.04 1.59 6.67 -2.39 -0.02 1.57 16 26 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 27 H 0.26 15.31 6.31 -92.71 -0.59 14.73 16 28 H 0.07 2.89 8.11 -2.39 -0.02 2.87 16 29 H 0.04 2.05 8.04 -2.39 -0.02 2.03 16 30 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.09 2.50 8.14 -2.38 -0.02 2.48 16 33 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 Total: -1.00 -57.40 266.85 5.18 -52.22 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 1.25 Total: 14.54 kcal Atomic # 6 Polarization: -50.15 SS G_CDS: 2.81 Total: -47.34 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: 0.29 Total: -53.87 kcal Atomic # 14 Polarization: 48.15 SS G_CDS: 2.05 Total: 50.20 kcal Atomic # 16 Polarization: -14.53 SS G_CDS: -1.22 Total: -15.74 kcal Total: -57.40 5.18 -52.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260446549.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.701 kcal (2) G-P(sol) polarization free energy of solvation -57.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds