Wall clock time and date at job start Mon Mar 30 2020 02:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47243 * 2 1 4 4 C 1.52998 * 109.47149 * 239.99718 * 2 1 3 5 5 H 1.09003 * 109.47156 * 306.20673 * 4 2 1 6 6 C 1.50700 * 109.46984 * 66.20114 * 4 2 1 7 7 H 1.08002 * 119.99899 * 54.83396 * 6 4 2 8 8 C 1.37878 * 120.00022 * 234.83111 * 6 4 2 9 9 N 1.31513 * 119.99722 * 180.80324 * 8 6 4 10 10 Si 1.86792 * 120.00142 * 0.80619 * 8 6 4 11 11 H 1.48502 * 109.47607 * 89.08292 * 10 8 6 12 12 H 1.48497 * 109.47119 * 209.08521 * 10 8 6 13 13 H 1.48507 * 109.47390 * 329.08200 * 10 8 6 14 14 C 1.52998 * 109.47433 * 186.20472 * 4 2 1 15 15 H 1.09004 * 110.35382 * 300.14037 * 14 4 2 16 16 C 1.54270 * 110.40319 * 177.69366 * 14 4 2 17 17 C 1.53852 * 108.92759 * 213.25193 * 16 14 4 18 18 C 1.55139 * 106.90089 * 47.25589 * 17 16 14 19 19 S 1.83098 * 110.40273 * 62.46403 * 14 4 2 20 20 H 1.08995 * 109.47608 * 174.77667 * 1 2 3 21 21 H 1.09007 * 109.46985 * 294.77623 * 1 2 3 22 22 H 1.08998 * 109.46944 * 54.76902 * 1 2 3 23 23 H 1.09005 * 109.46952 * 119.99975 * 2 1 3 24 24 H 1.08997 * 109.46831 * 64.58978 * 3 2 1 25 25 H 1.09009 * 109.46646 * 184.58512 * 3 2 1 26 26 H 1.08993 * 109.47197 * 304.58387 * 3 2 1 27 27 H 0.97001 * 119.99820 * 180.02562 * 9 8 6 28 28 H 1.09004 * 109.60855 * 333.17627 * 16 14 4 29 29 H 1.09005 * 109.61223 * 93.33102 * 16 14 4 30 30 H 1.08999 * 109.97868 * 287.89822 * 17 16 14 31 31 H 1.09001 * 109.97656 * 166.61576 * 17 16 14 32 32 H 1.08995 * 110.86170 * 199.70484 * 18 17 16 33 33 H 1.09003 * 111.03199 * 76.14112 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 1.5887 -1.7119 -1.3064 6 6 1.6668 0.0721 -2.4749 7 1 1.9551 1.1099 -2.5548 8 6 0.9575 -0.5268 -3.4943 9 7 0.6456 0.1613 -4.5708 10 14 0.4395 -2.3153 -3.3463 11 1 -0.8881 -2.3932 -2.6853 12 1 0.3546 -2.9197 -4.7000 13 1 1.4400 -3.0551 -2.5357 14 6 3.5620 -0.8578 -1.1737 15 1 4.0283 0.1257 -1.1135 16 6 4.0937 -1.6337 -2.3965 17 6 5.3201 -2.4587 -1.9693 18 6 4.9372 -3.1884 -0.6549 19 16 4.0405 -1.8805 0.2676 20 1 -0.3634 -1.0233 -0.0935 21 1 -0.3633 0.4307 0.9331 22 1 -0.3633 0.5928 -0.8394 23 1 1.8933 -0.5139 0.8900 24 1 1.7453 1.9320 0.9282 25 1 3.1270 1.4434 -0.0822 26 1 1.6112 1.9794 -0.8460 27 1 0.1463 -0.2600 -5.2878 28 1 3.3174 -2.3002 -2.7726 29 1 4.3799 -0.9314 -3.1794 30 1 6.1702 -1.7991 -1.7949 31 1 5.5661 -3.1874 -2.7417 32 1 5.8284 -3.5042 -0.1125 33 1 4.2852 -4.0386 -0.8551 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260446551.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:31 Heat of formation + Delta-G solvation = -43.704903 kcal Electronic energy + Delta-G solvation = -13296.255429 eV Core-core repulsion = 11253.362864 eV Total energy + Delta-G solvation = -2042.892566 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.81967 -36.11754 -34.21162 -31.43408 -28.26650 -27.82524 -26.04273 -23.70161 -21.43025 -20.39785 -19.02975 -17.29167 -16.51675 -15.95160 -15.66655 -15.26355 -14.77418 -14.67125 -14.13997 -13.88878 -13.31898 -13.12136 -12.90477 -12.79723 -12.66895 -12.28683 -12.08830 -11.82857 -11.79456 -11.65501 -11.22565 -11.15258 -10.78182 -10.60826 -10.35032 -8.56246 -8.21980 -6.20833 1.07334 1.31738 1.36171 1.42426 1.64999 2.36407 3.15856 3.76802 3.87332 4.12125 4.20794 4.32457 4.34609 4.53094 4.54581 4.68455 4.77789 4.89791 4.94410 5.01845 5.10148 5.10926 5.18764 5.25452 5.34309 5.41343 5.51944 5.57750 5.68299 5.86521 6.41593 6.84717 7.42750 8.94284 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.025177 B = 0.015581 C = 0.011959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.838826 B = 1796.636946 C = 2340.791936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.086 4.086 3 C -0.127 4.127 4 C 0.029 3.971 5 H 0.035 0.965 6 C -0.475 4.475 7 H 0.046 0.954 8 C 0.028 3.972 9 N -0.947 5.947 10 Si 0.912 3.088 11 H -0.276 1.276 12 H -0.293 1.293 13 H -0.241 1.241 14 C -0.005 4.005 15 H 0.082 0.918 16 C -0.122 4.122 17 C -0.120 4.120 18 C -0.062 4.062 19 S -0.360 6.360 20 H 0.037 0.963 21 H 0.061 0.939 22 H 0.041 0.959 23 H 0.059 0.941 24 H 0.054 0.946 25 H 0.044 0.956 26 H 0.042 0.958 27 H 0.262 0.738 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.121 0.879 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.989 -6.035 7.196 11.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.105 4.105 3 C -0.184 4.184 4 C 0.008 3.992 5 H 0.053 0.947 6 C -0.515 4.515 7 H 0.064 0.936 8 C -0.169 4.169 9 N -0.588 5.588 10 Si 0.739 3.261 11 H -0.202 1.202 12 H -0.220 1.220 13 H -0.165 1.165 14 C -0.133 4.133 15 H 0.100 0.900 16 C -0.161 4.161 17 C -0.159 4.159 18 C -0.210 4.210 19 S -0.133 6.133 20 H 0.056 0.944 21 H 0.080 0.920 22 H 0.060 0.940 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.117 0.883 32 H 0.139 0.861 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.733 -5.930 8.229 12.175 hybrid contribution -0.467 -0.592 -1.706 1.865 sum 6.267 -6.521 6.523 11.151 Atomic orbital electron populations 1.21654 0.95908 1.00376 1.00793 1.21133 0.95527 0.96449 0.97362 1.21679 0.99917 0.96329 1.00468 1.19383 0.89844 0.95932 0.94034 0.94683 1.21019 1.32648 0.97337 1.00507 0.93620 1.25633 0.96000 1.00462 0.94805 1.70016 1.41817 1.38495 1.08495 0.86330 0.79743 0.83017 0.77049 1.20159 1.21990 1.16533 1.24065 1.00696 0.97928 0.90620 0.89998 1.22345 0.97473 0.98704 0.97616 1.22567 0.97832 0.99074 0.96395 1.24282 1.02051 0.97289 0.97373 1.87322 1.73108 1.31683 1.21143 0.94431 0.92019 0.93986 0.92255 0.92694 0.93733 0.93896 0.92913 0.92771 0.90963 0.89661 0.88330 0.86060 0.89573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.09 8.94 71.98 0.64 -4.45 16 2 C -0.09 -3.44 2.59 -10.80 -0.03 -3.47 16 3 C -0.13 -4.82 8.54 71.98 0.61 -4.20 16 4 C 0.03 1.26 0.99 -11.54 -0.01 1.25 16 5 H 0.04 1.62 4.47 -2.39 -0.01 1.61 16 6 C -0.48 -24.78 6.64 25.60 0.17 -24.61 16 7 H 0.05 2.65 6.77 -2.91 -0.02 2.63 16 8 C 0.03 1.55 5.47 84.65 0.46 2.01 16 9 N -0.95 -56.69 13.96 21.45 0.30 -56.39 16 10 Si 0.91 42.87 26.05 68.60 1.79 44.66 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 12 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 13 H -0.24 -10.54 5.44 99.48 0.54 -10.00 16 14 C 0.00 -0.19 2.55 31.02 0.08 -0.11 16 15 H 0.08 3.30 6.57 -2.38 -0.02 3.28 16 16 C -0.12 -4.46 5.34 31.31 0.17 -4.30 16 17 C -0.12 -3.21 6.46 31.61 0.20 -3.01 16 18 C -0.06 -1.65 7.38 72.72 0.54 -1.11 16 19 S -0.36 -12.44 21.34 -56.49 -1.21 -13.64 16 20 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 21 H 0.06 2.02 8.14 -2.38 -0.02 2.01 16 22 H 0.04 1.83 7.59 -2.39 -0.02 1.81 16 23 H 0.06 2.29 6.89 -2.38 -0.02 2.27 16 24 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.04 1.65 6.43 -2.38 -0.02 1.63 16 26 H 0.04 1.81 6.62 -2.39 -0.02 1.80 16 27 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 28 H 0.05 2.17 5.49 -2.38 -0.01 2.16 16 29 H 0.07 2.75 8.14 -2.38 -0.02 2.73 16 30 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.09 2.23 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -59.02 260.17 4.62 -54.40 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 0.90 Total: 12.97 kcal Atomic # 6 Polarization: -44.83 SS G_CDS: 2.84 Total: -41.99 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: 0.30 Total: -56.39 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 1.79 Total: 44.66 kcal Atomic # 16 Polarization: -12.44 SS G_CDS: -1.21 Total: -13.64 kcal Total: -59.02 4.62 -54.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260446551.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.694 kcal (2) G-P(sol) polarization free energy of solvation -59.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds