Wall clock time and date at job start Mon Mar 30 2020 02:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47026 * 2 1 4 4 H 1.09003 * 109.47407 * 178.52558 * 3 2 1 5 5 C 1.50696 * 109.47311 * 58.53101 * 3 2 1 6 6 H 1.08003 * 120.00210 * 239.99756 * 5 3 2 7 7 C 1.37873 * 120.00227 * 59.99276 * 5 3 2 8 8 N 1.31517 * 120.00254 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00115 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47324 * 60.00460 * 9 7 5 11 11 H 1.48503 * 109.47041 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47037 * 300.00084 * 9 7 5 13 13 C 1.53002 * 109.47586 * 298.52697 * 3 2 1 14 14 H 1.08999 * 109.38432 * 58.06388 * 13 3 2 15 15 C 1.52580 * 109.38666 * 298.26853 * 13 3 2 16 16 C 1.52583 * 110.72439 * 169.17230 * 15 13 3 17 17 C 1.53101 * 109.95532 * 70.67526 * 16 15 13 18 18 S 1.81748 * 108.83839 * 296.97352 * 17 16 15 19 19 C 1.53088 * 109.39138 * 177.76957 * 13 3 2 20 20 H 1.09000 * 109.47355 * 184.15861 * 1 2 3 21 21 H 1.08999 * 109.47082 * 64.16347 * 1 2 3 22 22 H 1.09001 * 109.47111 * 304.16095 * 1 2 3 23 23 H 1.08995 * 109.47391 * 120.00180 * 2 1 3 24 24 H 1.09006 * 109.47136 * 240.00251 * 2 1 3 25 25 H 0.96997 * 120.00204 * 179.97438 * 8 7 5 26 26 H 1.09003 * 109.22692 * 289.48985 * 15 13 3 27 27 H 1.09000 * 109.23003 * 48.84968 * 15 13 3 28 28 H 1.09002 * 109.39100 * 190.82157 * 16 15 13 29 29 H 1.08995 * 109.39364 * 310.52518 * 16 15 13 30 30 H 1.08993 * 109.58002 * 56.77863 * 17 16 15 31 31 H 1.09004 * 109.57554 * 177.04227 * 17 16 15 32 32 H 1.08997 * 109.58290 * 302.97658 * 19 13 3 33 33 H 1.09001 * 109.57998 * 63.37078 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 3.1296 1.4426 0.0264 5 6 1.5081 2.1633 1.2118 6 1 0.8899 3.0405 1.0902 7 6 1.8106 1.7030 2.4757 8 7 2.5638 0.6351 2.6239 9 14 1.1508 2.5962 3.9778 10 1 -0.3338 2.5955 3.9417 11 1 1.6167 1.9069 5.2079 12 1 1.6453 3.9964 3.9780 13 6 1.5605 2.1530 -1.2674 14 1 0.4717 2.1220 -1.3096 15 6 2.1353 1.4473 -2.4919 16 6 1.4724 1.9556 -3.7688 17 6 1.9255 3.3892 -4.0577 18 16 1.3682 4.4651 -2.7030 19 6 2.0247 3.6115 -1.2388 20 1 -0.3634 -1.0249 0.0745 21 1 -0.3633 0.4479 -0.9249 22 1 -0.3633 0.5771 0.8504 23 1 1.8933 -0.5138 0.8899 24 1 1.8933 -0.5138 -0.8901 25 1 2.7769 0.3115 3.5131 26 1 3.2075 1.6359 -2.5446 27 1 1.9643 0.3746 -2.4013 28 1 1.7528 1.3124 -4.6029 29 1 0.3894 1.9360 -3.6469 30 1 3.0128 3.4218 -4.1262 31 1 1.4900 3.7274 -4.9980 32 1 1.6522 4.0959 -0.3363 33 1 3.1140 3.6485 -1.2525 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260451421.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:48 Heat of formation + Delta-G solvation = -45.348191 kcal Electronic energy + Delta-G solvation = -13171.984548 eV Core-core repulsion = 11129.020724 eV Total energy + Delta-G solvation = -2042.963824 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.21477 -35.73625 -33.43428 -31.95444 -28.42092 -27.90895 -25.63024 -23.34130 -22.20623 -20.15539 -18.06603 -17.47941 -16.65450 -16.11716 -15.65179 -14.86249 -14.65479 -14.21362 -14.12294 -14.06547 -13.67044 -13.15694 -12.82699 -12.69935 -12.41318 -12.24874 -12.20488 -11.96270 -11.82730 -11.45642 -11.14085 -10.96350 -10.57713 -10.30347 -10.23910 -8.59771 -8.02311 -6.12067 0.97200 1.41526 1.42837 1.48816 1.71251 2.45804 3.26231 3.86048 3.96630 4.10521 4.22088 4.42650 4.54515 4.67185 4.70300 4.75805 4.83081 4.90105 4.94663 5.11634 5.18875 5.23229 5.30087 5.39367 5.47937 5.63993 5.73775 5.77088 6.02803 6.24948 6.46105 6.97226 7.53805 9.01606 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.037016 B = 0.010194 C = 0.008735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.251525 B = 2746.033096 C = 3204.877306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.111 4.111 3 C 0.058 3.942 4 H -0.009 1.009 5 C -0.509 4.509 6 H 0.050 0.950 7 C 0.018 3.982 8 N -0.915 5.915 9 Si 0.936 3.064 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.275 1.275 13 C -0.068 4.068 14 H 0.064 0.936 15 C -0.125 4.125 16 C -0.113 4.113 17 C -0.066 4.066 18 S -0.325 6.325 19 C -0.048 4.048 20 H 0.038 0.962 21 H 0.049 0.951 22 H 0.037 0.963 23 H 0.054 0.946 24 H 0.037 0.963 25 H 0.257 0.743 26 H 0.053 0.947 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.121 0.879 32 H 0.089 0.911 33 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.664 1.700 -11.281 11.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.149 4.149 3 C 0.038 3.962 4 H 0.009 0.991 5 C -0.547 4.547 6 H 0.068 0.932 7 C -0.180 4.180 8 N -0.556 5.556 9 Si 0.763 3.237 10 H -0.199 1.199 11 H -0.214 1.214 12 H -0.201 1.201 13 C -0.088 4.088 14 H 0.083 0.917 15 C -0.163 4.163 16 C -0.152 4.152 17 C -0.214 4.214 18 S -0.098 6.098 19 C -0.196 4.196 20 H 0.057 0.943 21 H 0.068 0.932 22 H 0.056 0.944 23 H 0.073 0.927 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.113 0.887 29 H 0.087 0.913 30 H 0.105 0.895 31 H 0.139 0.861 32 H 0.108 0.892 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.178 2.584 -11.219 11.717 hybrid contribution 0.605 -0.644 1.499 1.740 sum -1.573 1.940 -9.720 10.036 Atomic orbital electron populations 1.21537 0.96718 0.99152 1.00605 1.21438 0.95459 0.98635 0.99403 1.18634 0.93858 0.92474 0.91280 0.99065 1.21368 1.30502 1.11317 0.91515 0.93153 1.25549 0.95652 0.95673 1.01174 1.69995 1.38601 1.24272 1.22701 0.85955 0.78928 0.78955 0.79889 1.19925 1.21411 1.20094 1.21240 0.99859 0.92060 0.95609 0.91722 1.21657 0.99579 1.01055 0.93991 1.21679 1.01086 0.94536 0.97885 1.23483 1.03964 0.96403 0.97557 1.86643 1.76687 1.40879 1.05631 1.23394 1.01730 0.98656 0.95776 0.94293 0.93166 0.94417 0.92714 0.94465 0.93390 0.92825 0.90885 0.88668 0.91272 0.89527 0.86111 0.89227 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.05 9.29 71.98 0.67 -4.38 16 2 C -0.11 -5.03 5.22 30.59 0.16 -4.87 16 3 C 0.06 2.72 1.67 -11.54 -0.02 2.70 16 4 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 5 C -0.51 -26.59 6.38 25.60 0.16 -26.42 16 6 H 0.05 2.63 6.56 -2.91 -0.02 2.61 16 7 C 0.02 0.97 5.30 84.65 0.45 1.41 16 8 N -0.92 -51.95 11.33 21.45 0.24 -51.71 16 9 Si 0.94 43.41 29.54 68.60 2.03 45.44 16 10 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 11 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 13 C -0.07 -2.59 1.33 -10.90 -0.01 -2.61 16 14 H 0.06 2.58 6.37 -2.39 -0.02 2.57 16 15 C -0.13 -3.91 4.84 30.32 0.15 -3.77 16 16 C -0.11 -2.75 5.75 30.49 0.18 -2.58 16 17 C -0.07 -1.59 6.46 72.02 0.46 -1.12 16 18 S -0.33 -10.49 22.33 -56.49 -1.26 -11.75 16 19 C -0.05 -1.80 5.50 72.01 0.40 -1.41 16 20 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 21 H 0.05 1.85 6.64 -2.39 -0.02 1.83 16 22 H 0.04 1.72 7.02 -2.39 -0.02 1.70 16 23 H 0.05 2.87 6.11 -2.39 -0.01 2.85 16 24 H 0.04 1.50 6.17 -2.38 -0.01 1.49 16 25 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 26 H 0.05 1.68 8.08 -2.39 -0.02 1.66 16 27 H 0.07 2.29 5.91 -2.39 -0.01 2.28 16 28 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.07 1.76 8.06 -2.39 -0.02 1.74 16 30 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.09 3.78 6.39 -2.39 -0.02 3.76 16 33 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -56.63 260.74 4.67 -51.96 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: 1.07 Total: 9.11 kcal Atomic # 6 Polarization: -45.64 SS G_CDS: 2.59 Total: -43.05 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: 0.24 Total: -51.71 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: -10.49 SS G_CDS: -1.26 Total: -11.75 kcal Total: -56.63 4.67 -51.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260451421.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.612 kcal (2) G-P(sol) polarization free energy of solvation -56.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds