Wall clock time and date at job start Mon Mar 30 2020 02:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.46781 * 2 1 4 4 H 1.08997 * 109.46809 * 304.40130 * 3 2 1 5 5 C 1.50695 * 109.47481 * 64.40468 * 3 2 1 6 6 H 1.08004 * 120.00034 * 65.25919 * 5 3 2 7 7 C 1.37877 * 119.99974 * 245.26033 * 5 3 2 8 8 N 1.31508 * 120.00144 * 9.99672 * 7 5 3 9 9 Si 1.86804 * 120.00087 * 189.72499 * 7 5 3 10 10 H 1.48492 * 109.47295 * 180.27425 * 9 7 5 11 11 H 1.48496 * 109.46918 * 300.27450 * 9 7 5 12 12 H 1.48498 * 109.47115 * 60.27078 * 9 7 5 13 13 C 1.53007 * 109.46829 * 184.40528 * 3 2 1 14 14 H 1.08998 * 109.38748 * 299.99824 * 13 3 2 15 15 C 1.52581 * 109.38916 * 59.79728 * 13 3 2 16 16 C 1.52587 * 110.72306 * 190.82393 * 15 13 3 17 17 C 1.53097 * 109.95746 * 289.32639 * 16 15 13 18 18 S 1.81745 * 108.84172 * 63.02301 * 17 16 15 19 19 C 1.53094 * 109.38996 * 180.19634 * 13 3 2 20 20 H 1.09000 * 109.46651 * 183.61952 * 1 2 3 21 21 H 1.08997 * 109.47490 * 303.62135 * 1 2 3 22 22 H 1.08996 * 109.46696 * 63.62622 * 1 2 3 23 23 H 1.09000 * 109.47168 * 239.99645 * 2 1 3 24 24 H 1.09005 * 109.46870 * 119.99647 * 2 1 3 25 25 H 0.97005 * 120.00098 * 355.76239 * 8 7 5 26 26 H 1.08999 * 109.22915 * 311.14837 * 15 13 3 27 27 H 1.09001 * 109.22638 * 70.50849 * 15 13 3 28 28 H 1.08993 * 109.39320 * 49.47411 * 16 15 13 29 29 H 1.08998 * 109.38684 * 169.18256 * 16 15 13 30 30 H 1.08995 * 109.57987 * 182.83599 * 17 16 15 31 31 H 1.09005 * 109.57790 * 303.09093 * 17 16 15 32 32 H 1.08999 * 109.57332 * 296.63549 * 19 13 3 33 33 H 1.08997 * 109.57383 * 57.01746 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6136 1.9785 -0.8479 5 6 1.6287 2.1207 1.2813 6 1 2.0275 1.7793 2.2252 7 6 0.7433 3.1772 1.2487 8 7 0.1075 3.4682 0.1349 9 14 0.4412 4.1905 2.7887 10 1 -0.5512 5.2550 2.4939 11 1 -0.0812 3.3111 3.8652 12 1 1.7158 4.8107 3.2311 13 6 3.5660 1.4439 -0.1108 14 1 3.9909 0.9076 0.7376 15 6 3.9805 0.7524 -1.4062 16 6 5.4848 0.4977 -1.4249 17 6 6.2371 1.8216 -1.5841 18 16 5.8918 2.8701 -0.1403 19 6 4.0746 2.8879 -0.1057 20 1 -0.3633 -1.0256 0.0649 21 1 -0.3634 0.5690 0.8557 22 1 -0.3632 0.4565 -0.9207 23 1 1.8934 -0.5139 -0.8899 24 1 1.8934 -0.5138 0.8901 25 1 0.3065 2.9794 -0.6790 26 1 3.4543 -0.1985 -1.4898 27 1 3.7131 1.3854 -2.2524 28 1 5.7830 0.0222 -0.4906 29 1 5.7301 -0.1602 -2.2586 30 1 7.3078 1.6280 -1.6472 31 1 5.9029 2.3248 -2.4914 32 1 3.6965 3.4114 -0.9838 33 1 3.7326 3.3924 0.7979 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260451442.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:50 Heat of formation + Delta-G solvation = -37.553071 kcal Electronic energy + Delta-G solvation = -13145.671004 eV Core-core repulsion = 11103.045202 eV Total energy + Delta-G solvation = -2042.625802 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -37.61516 -34.33504 -31.57666 -30.76628 -26.78063 -26.13804 -23.69558 -21.53935 -20.62469 -19.30071 -16.71656 -15.96934 -14.75556 -14.46152 -13.73765 -13.60627 -13.22778 -12.98853 -12.68213 -12.56705 -12.18480 -11.55230 -11.09639 -11.02458 -10.82297 -10.64220 -10.60431 -10.34566 -10.12507 -9.87889 -9.70064 -9.17098 -8.98620 -8.52134 -8.21238 -7.22586 -6.34910 -4.01925 2.29432 3.08583 3.43009 3.44994 3.62766 4.51301 5.01347 5.11493 5.33297 5.40077 5.55788 5.74347 5.79966 5.94734 6.02267 6.11229 6.25532 6.30386 6.39133 6.42914 6.44958 6.75708 6.81565 6.89745 7.03698 7.07810 7.31143 7.47180 7.53394 8.26691 8.45320 8.90776 9.66804 11.03527 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.029820 B = 0.011543 C = 0.008988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.733680 B = 2425.183449 C = 3114.451708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.109 4.109 3 C 0.031 3.969 4 H 0.043 0.957 5 C -0.587 4.587 6 H 0.047 0.953 7 C 0.026 3.974 8 N -0.910 5.910 9 Si 1.057 2.943 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.287 1.287 13 C -0.073 4.073 14 H 0.065 0.935 15 C -0.131 4.131 16 C -0.119 4.119 17 C -0.076 4.076 18 S -0.311 6.311 19 C -0.040 4.040 20 H 0.024 0.976 21 H 0.068 0.932 22 H 0.038 0.962 23 H 0.029 0.971 24 H 0.041 0.959 25 H 0.270 0.730 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.419 -4.339 -3.014 9.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.147 4.147 3 C 0.011 3.989 4 H 0.061 0.939 5 C -0.625 4.625 6 H 0.066 0.934 7 C -0.179 4.179 8 N -0.547 5.547 9 Si 0.886 3.114 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.214 1.214 13 C -0.094 4.094 14 H 0.083 0.917 15 C -0.169 4.169 16 C -0.158 4.158 17 C -0.224 4.224 18 S -0.084 6.084 19 C -0.188 4.188 20 H 0.043 0.957 21 H 0.087 0.913 22 H 0.057 0.943 23 H 0.047 0.953 24 H 0.060 0.940 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.111 0.889 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 7.267 -2.537 -1.730 7.889 hybrid contribution 0.118 -1.821 -1.410 2.306 sum 7.385 -4.358 -3.139 9.132 Atomic orbital electron populations 1.21576 0.96723 0.98430 1.02273 1.21673 0.95576 0.99314 0.98123 1.19056 0.88752 0.92508 0.98608 0.93895 1.21773 1.30425 1.17609 0.92692 0.93441 1.25683 0.92872 0.96334 1.03021 1.70850 1.38159 1.44488 1.01196 0.83708 0.76440 0.76482 0.74816 1.20919 1.21537 1.21388 1.21430 0.99977 0.92504 0.95471 0.91695 1.21786 0.94216 1.01626 0.99259 1.21721 0.96300 0.95593 1.02180 1.23319 1.03037 0.97892 0.98143 1.86635 1.13612 1.67136 1.41026 1.23502 0.87584 1.01269 1.06408 0.95681 0.91306 0.94308 0.95274 0.93968 0.91723 0.91089 0.92770 0.91074 0.91962 0.88911 0.90589 0.91219 0.86465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 9.78 37.16 0.36 -2.43 16 2 C -0.11 -2.27 5.18 -26.73 -0.14 -2.41 16 3 C 0.03 0.72 1.61 -91.77 -0.15 0.57 16 4 H 0.04 1.07 5.83 -51.93 -0.30 0.77 16 5 C -0.59 -15.10 5.88 -34.44 -0.20 -15.30 16 6 H 0.05 1.26 7.83 -52.48 -0.41 0.85 16 7 C 0.03 0.69 5.39 -17.82 -0.10 0.59 16 8 N -0.91 -25.80 13.64 55.43 0.76 -25.05 16 9 Si 1.06 24.44 29.92 -169.99 -5.09 19.36 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 13 C -0.07 -1.46 1.62 -90.78 -0.15 -1.61 16 14 H 0.06 1.36 8.06 -51.93 -0.42 0.94 16 15 C -0.13 -2.21 4.82 -27.16 -0.13 -2.34 16 16 C -0.12 -1.70 5.75 -26.89 -0.15 -1.86 16 17 C -0.08 -1.09 6.45 37.21 0.24 -0.85 16 18 S -0.31 -5.57 22.33 -107.50 -2.40 -7.97 16 19 C -0.04 -0.82 5.53 37.21 0.21 -0.61 16 20 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 21 H 0.07 1.63 7.20 -51.93 -0.37 1.26 16 22 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.03 0.55 5.97 -51.93 -0.31 0.24 16 24 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.27 7.61 6.35 -40.82 -0.26 7.35 16 26 H 0.07 1.17 5.78 -51.93 -0.30 0.87 16 27 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 28 H 0.07 1.05 8.06 -51.93 -0.42 0.63 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 33 H 0.12 2.66 7.11 -51.93 -0.37 2.29 16 LS Contribution 266.47 15.07 4.02 4.02 Total: -1.00 -26.70 266.47 -8.26 -34.96 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -5.34 Total: 0.93 kcal Atomic # 6 Polarization: -26.05 SS G_CDS: -0.21 Total: -26.25 kcal Atomic # 7 Polarization: -25.80 SS G_CDS: 0.76 Total: -25.05 kcal Atomic # 14 Polarization: 24.44 SS G_CDS: -5.09 Total: 19.36 kcal Atomic # 16 Polarization: -5.57 SS G_CDS: -2.40 Total: -7.97 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -26.70 -8.26 -34.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260451442.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.589 kcal (2) G-P(sol) polarization free energy of solvation -26.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds