Wall clock time and date at job start Mon Mar 30 2020 02:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.46781 * 2 1 4 4 H 1.08997 * 109.46809 * 304.40130 * 3 2 1 5 5 C 1.50695 * 109.47481 * 64.40468 * 3 2 1 6 6 H 1.08004 * 120.00034 * 65.25919 * 5 3 2 7 7 C 1.37877 * 119.99974 * 245.26033 * 5 3 2 8 8 N 1.31508 * 120.00144 * 9.99672 * 7 5 3 9 9 Si 1.86804 * 120.00087 * 189.72499 * 7 5 3 10 10 H 1.48492 * 109.47295 * 180.27425 * 9 7 5 11 11 H 1.48496 * 109.46918 * 300.27450 * 9 7 5 12 12 H 1.48498 * 109.47115 * 60.27078 * 9 7 5 13 13 C 1.53007 * 109.46829 * 184.40528 * 3 2 1 14 14 H 1.08998 * 109.38748 * 299.99824 * 13 3 2 15 15 C 1.52581 * 109.38916 * 59.79728 * 13 3 2 16 16 C 1.52587 * 110.72306 * 190.82393 * 15 13 3 17 17 C 1.53097 * 109.95746 * 289.32639 * 16 15 13 18 18 S 1.81745 * 108.84172 * 63.02301 * 17 16 15 19 19 C 1.53094 * 109.38996 * 180.19634 * 13 3 2 20 20 H 1.09000 * 109.46651 * 183.61952 * 1 2 3 21 21 H 1.08997 * 109.47490 * 303.62135 * 1 2 3 22 22 H 1.08996 * 109.46696 * 63.62622 * 1 2 3 23 23 H 1.09000 * 109.47168 * 239.99645 * 2 1 3 24 24 H 1.09005 * 109.46870 * 119.99647 * 2 1 3 25 25 H 0.97005 * 120.00098 * 355.76239 * 8 7 5 26 26 H 1.08999 * 109.22915 * 311.14837 * 15 13 3 27 27 H 1.09001 * 109.22638 * 70.50849 * 15 13 3 28 28 H 1.08993 * 109.39320 * 49.47411 * 16 15 13 29 29 H 1.08998 * 109.38684 * 169.18256 * 16 15 13 30 30 H 1.08995 * 109.57987 * 182.83599 * 17 16 15 31 31 H 1.09005 * 109.57790 * 303.09093 * 17 16 15 32 32 H 1.08999 * 109.57332 * 296.63549 * 19 13 3 33 33 H 1.08997 * 109.57383 * 57.01746 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6136 1.9785 -0.8479 5 6 1.6287 2.1207 1.2813 6 1 2.0275 1.7793 2.2252 7 6 0.7433 3.1772 1.2487 8 7 0.1075 3.4682 0.1349 9 14 0.4412 4.1905 2.7887 10 1 -0.5512 5.2550 2.4939 11 1 -0.0812 3.3111 3.8652 12 1 1.7158 4.8107 3.2311 13 6 3.5660 1.4439 -0.1108 14 1 3.9909 0.9076 0.7376 15 6 3.9805 0.7524 -1.4062 16 6 5.4848 0.4977 -1.4249 17 6 6.2371 1.8216 -1.5841 18 16 5.8918 2.8701 -0.1403 19 6 4.0746 2.8879 -0.1057 20 1 -0.3633 -1.0256 0.0649 21 1 -0.3634 0.5690 0.8557 22 1 -0.3632 0.4565 -0.9207 23 1 1.8934 -0.5139 -0.8899 24 1 1.8934 -0.5138 0.8901 25 1 0.3065 2.9794 -0.6790 26 1 3.4543 -0.1985 -1.4898 27 1 3.7131 1.3854 -2.2524 28 1 5.7830 0.0222 -0.4906 29 1 5.7301 -0.1602 -2.2586 30 1 7.3078 1.6280 -1.6472 31 1 5.9029 2.3248 -2.4914 32 1 3.6965 3.4114 -0.9838 33 1 3.7326 3.3924 0.7979 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260451442.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:50 Heat of formation + Delta-G solvation = -50.376129 kcal Electronic energy + Delta-G solvation = -13146.227053 eV Core-core repulsion = 11103.045202 eV Total energy + Delta-G solvation = -2043.181852 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.22630 -35.92820 -33.47055 -32.30123 -28.20272 -27.96546 -25.53469 -22.98339 -22.26500 -20.94756 -18.63147 -17.43691 -16.20405 -16.07930 -15.63826 -15.16972 -14.75307 -14.47716 -14.18838 -14.13831 -13.79849 -13.26072 -12.77570 -12.67018 -12.44173 -12.19488 -12.15045 -12.01917 -11.87394 -11.56873 -11.25765 -10.92345 -10.59065 -10.41054 -10.17402 -8.66522 -8.47519 -6.12984 0.91433 1.53111 1.58147 1.65565 1.76594 2.58833 3.28620 3.77604 3.90755 4.02744 4.12758 4.35932 4.36881 4.47863 4.59806 4.61310 4.73454 4.79688 4.89132 4.95932 5.00350 5.14904 5.21085 5.28450 5.36356 5.40807 5.55533 5.69321 5.73985 6.26248 6.33876 6.82507 7.60358 8.91785 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.029820 B = 0.011543 C = 0.008988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.733680 B = 2425.183449 C = 3114.451708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.105 4.105 3 C 0.028 3.972 4 H 0.018 0.982 5 C -0.583 4.583 6 H 0.034 0.966 7 C -0.017 4.017 8 N -0.938 5.938 9 Si 1.091 2.909 10 H -0.289 1.289 11 H -0.276 1.276 12 H -0.277 1.277 13 C -0.066 4.066 14 H 0.055 0.945 15 C -0.127 4.127 16 C -0.113 4.113 17 C -0.067 4.067 18 S -0.326 6.326 19 C -0.037 4.037 20 H 0.055 0.945 21 H 0.034 0.966 22 H 0.030 0.970 23 H 0.057 0.943 24 H 0.041 0.959 25 H 0.261 0.739 26 H 0.079 0.921 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.123 0.877 31 H 0.084 0.916 32 H 0.056 0.944 33 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.986 -5.775 -3.683 11.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.143 4.143 3 C 0.007 3.993 4 H 0.036 0.964 5 C -0.621 4.621 6 H 0.052 0.948 7 C -0.217 4.217 8 N -0.577 5.577 9 Si 0.916 3.084 10 H -0.214 1.214 11 H -0.202 1.202 12 H -0.203 1.203 13 C -0.086 4.086 14 H 0.073 0.927 15 C -0.164 4.164 16 C -0.152 4.152 17 C -0.215 4.215 18 S -0.099 6.099 19 C -0.185 4.185 20 H 0.074 0.926 21 H 0.054 0.946 22 H 0.049 0.951 23 H 0.075 0.925 24 H 0.060 0.940 25 H 0.073 0.927 26 H 0.097 0.903 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.116 0.884 30 H 0.141 0.859 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.849 -3.989 -2.391 9.996 hybrid contribution -0.304 -1.418 -1.226 1.899 sum 8.544 -5.407 -3.617 10.739 Atomic orbital electron populations 1.21496 0.96960 0.99648 1.00287 1.21603 0.95336 0.97969 0.99375 1.19049 0.90871 0.93249 0.96085 0.96411 1.21985 1.29336 1.17367 0.93404 0.94775 1.26670 0.93048 0.97505 1.04445 1.70942 1.39792 1.45445 1.01511 0.83239 0.76643 0.75589 0.72888 1.21433 1.20154 1.20296 1.21263 0.97600 0.92545 0.97203 0.92678 1.21714 0.96583 1.01314 0.96796 1.21682 0.93833 0.95977 1.03658 1.23497 1.04907 0.96979 0.96083 1.86643 1.10646 1.68839 1.43763 1.23223 0.90087 1.01083 1.04107 0.92573 0.94642 0.95124 0.92492 0.93998 0.92742 0.90276 0.93058 0.91208 0.88363 0.85926 0.89701 0.92535 0.89853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.27 9.78 71.98 0.70 -4.57 16 2 C -0.10 -4.27 5.18 30.60 0.16 -4.11 16 3 C 0.03 1.30 1.61 -11.54 -0.02 1.28 16 4 H 0.02 0.91 5.83 -2.39 -0.01 0.90 16 5 C -0.58 -30.67 5.88 25.60 0.15 -30.52 16 6 H 0.03 1.85 7.83 -2.91 -0.02 1.83 16 7 C -0.02 -0.95 5.39 84.66 0.46 -0.50 16 8 N -0.94 -54.81 13.64 21.45 0.29 -54.52 16 9 Si 1.09 50.14 29.92 68.60 2.05 52.20 16 10 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 11 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 12 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 13 C -0.07 -2.59 1.62 -10.90 -0.02 -2.61 16 14 H 0.05 2.27 8.06 -2.39 -0.02 2.25 16 15 C -0.13 -3.95 4.82 30.32 0.15 -3.80 16 16 C -0.11 -2.77 5.75 30.49 0.18 -2.60 16 17 C -0.07 -1.68 6.45 72.01 0.46 -1.22 16 18 S -0.33 -11.24 22.33 -56.49 -1.26 -12.50 16 19 C -0.04 -1.52 5.53 72.01 0.40 -1.12 16 20 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 21 H 0.03 1.68 7.20 -2.39 -0.02 1.67 16 22 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.06 2.00 5.97 -2.39 -0.01 1.99 16 24 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 25 H 0.26 15.26 6.35 -92.70 -0.59 14.67 16 26 H 0.08 2.34 5.78 -2.39 -0.01 2.32 16 27 H 0.05 1.64 8.08 -2.39 -0.02 1.62 16 28 H 0.07 1.79 8.06 -2.39 -0.02 1.77 16 29 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.08 3.94 7.11 -2.39 -0.02 3.93 16 Total: -1.00 -58.52 266.47 4.94 -53.58 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 1.24 Total: 11.01 kcal Atomic # 6 Polarization: -52.38 SS G_CDS: 2.62 Total: -49.77 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: 0.29 Total: -54.52 kcal Atomic # 14 Polarization: 50.14 SS G_CDS: 2.05 Total: 52.20 kcal Atomic # 16 Polarization: -11.24 SS G_CDS: -1.26 Total: -12.50 kcal Total: -58.52 4.94 -53.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260451442.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.201 kcal (2) G-P(sol) polarization free energy of solvation -58.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds