Wall clock time and date at job start Mon Mar 30 2020 02:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47061 * 2 1 4 4 H 1.09005 * 109.46785 * 304.74277 * 3 2 1 5 5 C 1.50700 * 109.47300 * 64.73792 * 3 2 1 6 6 H 1.08000 * 119.99802 * 54.83708 * 5 3 2 7 7 C 1.37877 * 120.00075 * 234.83302 * 5 3 2 8 8 N 1.31511 * 120.00053 * 183.52806 * 7 5 3 9 9 Si 1.86797 * 120.00074 * 3.52266 * 7 5 3 10 10 H 1.48505 * 109.47293 * 84.48943 * 9 7 5 11 11 H 1.48503 * 109.47173 * 204.49108 * 9 7 5 12 12 H 1.48506 * 109.47179 * 324.48910 * 9 7 5 13 13 C 1.52995 * 109.47390 * 184.74239 * 3 2 1 14 14 H 1.09003 * 109.38746 * 299.99934 * 13 3 2 15 15 C 1.52578 * 109.39324 * 180.19657 * 13 3 2 16 16 C 1.52585 * 110.72866 * 169.17411 * 15 13 3 17 17 C 1.53101 * 109.95313 * 70.67337 * 16 15 13 18 18 S 1.81750 * 108.84137 * 296.97569 * 17 16 15 19 19 C 1.53096 * 109.39130 * 59.79493 * 13 3 2 20 20 H 1.09003 * 109.47021 * 184.53104 * 1 2 3 21 21 H 1.09003 * 109.47503 * 304.52731 * 1 2 3 22 22 H 1.08999 * 109.46964 * 64.53332 * 1 2 3 23 23 H 1.08998 * 109.47368 * 239.99683 * 2 1 3 24 24 H 1.09002 * 109.46774 * 119.99338 * 2 1 3 25 25 H 0.97000 * 120.00015 * 180.02562 * 8 7 5 26 26 H 1.09000 * 109.22598 * 289.49278 * 15 13 3 27 27 H 1.09002 * 109.22663 * 48.85196 * 15 13 3 28 28 H 1.08996 * 109.39079 * 190.82497 * 16 15 13 29 29 H 1.08999 * 109.38961 * 310.52872 * 16 15 13 30 30 H 1.08996 * 109.57437 * 56.78553 * 17 16 15 31 31 H 1.09005 * 109.57461 * 177.04175 * 17 16 15 32 32 H 1.09003 * 109.57956 * 302.98757 * 19 13 3 33 33 H 1.09003 * 109.57439 * 63.37294 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6088 1.9802 -0.8445 5 6 1.6357 2.1183 1.2849 6 1 1.9014 1.6766 2.2340 7 6 0.9269 3.3003 1.2488 8 7 0.6343 3.9260 2.3679 9 14 0.3823 4.0132 -0.3896 10 1 -0.8989 3.3852 -0.8014 11 1 0.1934 5.4798 -0.2531 12 1 1.4196 3.7412 -1.4171 13 6 3.5653 1.4442 -0.1193 14 1 3.9949 0.9062 0.7258 15 6 4.0722 2.8833 -0.1142 16 6 5.5901 2.9207 0.0373 17 6 6.2557 2.4145 -1.2452 18 16 5.7882 0.6772 -1.5029 19 6 3.9740 0.7530 -1.4227 20 1 -0.3633 -1.0245 0.0812 21 1 -0.3634 0.5825 0.8467 22 1 -0.3633 0.4419 -0.9278 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5137 0.8901 25 1 0.1353 4.7574 2.3426 26 1 3.7930 3.3655 -1.0510 27 1 3.6153 3.4219 0.7161 28 1 5.9093 3.9447 0.2309 29 1 5.8861 2.2867 0.8731 30 1 5.9191 3.0128 -2.0919 31 1 7.3387 2.4931 -1.1501 32 1 3.5661 -0.2577 -1.4436 33 1 3.5931 1.3202 -2.2719 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260451449.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:52 Heat of formation + Delta-G solvation = -34.865990 kcal Electronic energy + Delta-G solvation = -13201.138330 eV Core-core repulsion = 11158.629048 eV Total energy + Delta-G solvation = -2042.509282 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -37.56490 -34.15478 -32.02804 -30.58156 -27.51801 -26.26298 -23.46451 -22.14425 -19.95923 -18.95674 -17.21097 -16.12712 -14.62985 -14.35570 -14.10977 -13.46580 -13.19671 -12.97581 -12.84705 -12.63344 -12.36513 -11.86748 -11.13873 -11.06972 -10.87593 -10.82266 -10.60494 -10.44276 -10.12606 -9.75574 -9.64746 -9.31466 -9.03638 -8.85894 -8.51144 -7.34082 -6.10564 -4.06954 2.18141 2.90896 3.24126 3.32537 3.33917 4.37880 5.12556 5.20720 5.22993 5.39680 5.56688 5.64228 5.77332 5.91159 6.03590 6.09252 6.13032 6.26317 6.29247 6.47668 6.54687 6.67947 6.70001 6.96653 7.00976 7.13841 7.19795 7.36042 7.38752 7.76208 8.51439 8.96201 9.53012 11.02742 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.031256 B = 0.012014 C = 0.010079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.599309 B = 2330.150873 C = 2777.322308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 C 0.014 3.986 4 H 0.036 0.964 5 C -0.494 4.494 6 H 0.073 0.927 7 C 0.074 3.926 8 N -0.901 5.901 9 Si 0.868 3.132 10 H -0.276 1.276 11 H -0.292 1.292 12 H -0.264 1.264 13 C -0.073 4.073 14 H 0.072 0.928 15 C -0.121 4.121 16 C -0.121 4.121 17 C -0.073 4.073 18 S -0.305 6.305 19 C -0.070 4.070 20 H 0.032 0.968 21 H 0.071 0.929 22 H 0.035 0.965 23 H 0.033 0.967 24 H 0.051 0.949 25 H 0.263 0.737 26 H 0.046 0.954 27 H 0.096 0.904 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.401 -3.066 -7.052 10.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.148 4.148 3 C -0.007 4.007 4 H 0.054 0.946 5 C -0.532 4.532 6 H 0.091 0.909 7 C -0.128 4.128 8 N -0.539 5.539 9 Si 0.696 3.304 10 H -0.202 1.202 11 H -0.219 1.219 12 H -0.189 1.189 13 C -0.093 4.093 14 H 0.090 0.910 15 C -0.158 4.158 16 C -0.159 4.159 17 C -0.221 4.221 18 S -0.078 6.078 19 C -0.218 4.218 20 H 0.051 0.949 21 H 0.090 0.910 22 H 0.055 0.945 23 H 0.051 0.949 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.115 0.885 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.112 0.888 32 H 0.119 0.881 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.002 -3.791 -7.166 10.713 hybrid contribution -1.131 1.550 -0.735 2.055 sum 5.871 -2.241 -7.901 10.095 Atomic orbital electron populations 1.21690 0.96896 0.99426 1.01963 1.21631 0.95471 0.98765 0.98975 1.19387 0.89994 0.93315 0.98011 0.94563 1.20873 1.34040 1.06214 0.92094 0.90899 1.25047 0.95639 0.96504 0.95587 1.69896 1.40258 1.17453 1.26313 0.87042 0.79697 0.78074 0.85593 1.20171 1.21858 1.18917 1.21449 0.99503 0.94627 0.93748 0.90963 1.21565 0.93047 0.98030 1.03154 1.21758 0.97075 1.01022 0.96082 1.23391 1.03042 0.94230 1.01472 1.86499 1.10929 1.14771 1.95554 1.23830 0.90429 1.05044 1.02475 0.94887 0.90986 0.94535 0.94889 0.93009 0.92730 0.93571 0.88517 0.91696 0.90901 0.90576 0.88812 0.88064 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.80 37.16 0.36 -2.38 16 2 C -0.11 -2.15 5.17 -26.73 -0.14 -2.29 16 3 C 0.01 0.30 1.34 -91.77 -0.12 0.17 16 4 H 0.04 0.82 4.55 -51.93 -0.24 0.58 16 5 C -0.49 -12.73 6.40 -34.44 -0.22 -12.95 16 6 H 0.07 2.09 8.06 -52.49 -0.42 1.67 16 7 C 0.07 1.99 5.21 -17.82 -0.09 1.90 16 8 N -0.90 -26.31 13.96 55.43 0.77 -25.54 16 9 Si 0.87 20.76 27.19 -169.99 -4.62 16.14 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 12 H -0.26 -6.02 6.45 56.52 0.36 -5.65 16 13 C -0.07 -1.41 1.62 -90.79 -0.15 -1.56 16 14 H 0.07 1.47 8.06 -51.93 -0.42 1.05 16 15 C -0.12 -2.31 4.84 -27.16 -0.13 -2.44 16 16 C -0.12 -1.91 5.75 -26.89 -0.15 -2.06 16 17 C -0.07 -1.05 6.45 37.21 0.24 -0.81 16 18 S -0.30 -4.93 22.33 -107.50 -2.40 -7.33 16 19 C -0.07 -1.19 5.45 37.21 0.20 -0.99 16 20 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 21 H 0.07 1.57 7.23 -51.93 -0.38 1.19 16 22 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 23 H 0.03 0.57 6.11 -51.93 -0.32 0.25 16 24 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 25 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 26 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 27 H 0.10 2.14 6.62 -51.93 -0.34 1.79 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.07 1.18 8.06 -51.93 -0.42 0.76 16 30 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.10 1.65 6.17 -51.93 -0.32 1.33 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 264.43 15.07 3.98 3.98 Total: -1.00 -27.06 264.43 -7.87 -34.93 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -5.40 Total: 1.23 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: -0.20 Total: -23.42 kcal Atomic # 7 Polarization: -26.31 SS G_CDS: 0.77 Total: -25.54 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.62 Total: 16.14 kcal Atomic # 16 Polarization: -4.93 SS G_CDS: -2.40 Total: -7.33 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -27.06 -7.87 -34.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260451449.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.066 kcal (2) G-P(sol) polarization free energy of solvation -27.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds