Wall clock time and date at job start Mon Mar 30 2020 02:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47061 * 2 1 4 4 H 1.09005 * 109.46785 * 304.74277 * 3 2 1 5 5 C 1.50700 * 109.47300 * 64.73792 * 3 2 1 6 6 H 1.08000 * 119.99802 * 54.83708 * 5 3 2 7 7 C 1.37877 * 120.00075 * 234.83302 * 5 3 2 8 8 N 1.31511 * 120.00053 * 183.52806 * 7 5 3 9 9 Si 1.86797 * 120.00074 * 3.52266 * 7 5 3 10 10 H 1.48505 * 109.47293 * 84.48943 * 9 7 5 11 11 H 1.48503 * 109.47173 * 204.49108 * 9 7 5 12 12 H 1.48506 * 109.47179 * 324.48910 * 9 7 5 13 13 C 1.52995 * 109.47390 * 184.74239 * 3 2 1 14 14 H 1.09003 * 109.38746 * 299.99934 * 13 3 2 15 15 C 1.52578 * 109.39324 * 180.19657 * 13 3 2 16 16 C 1.52585 * 110.72866 * 169.17411 * 15 13 3 17 17 C 1.53101 * 109.95313 * 70.67337 * 16 15 13 18 18 S 1.81750 * 108.84137 * 296.97569 * 17 16 15 19 19 C 1.53096 * 109.39130 * 59.79493 * 13 3 2 20 20 H 1.09003 * 109.47021 * 184.53104 * 1 2 3 21 21 H 1.09003 * 109.47503 * 304.52731 * 1 2 3 22 22 H 1.08999 * 109.46964 * 64.53332 * 1 2 3 23 23 H 1.08998 * 109.47368 * 239.99683 * 2 1 3 24 24 H 1.09002 * 109.46774 * 119.99338 * 2 1 3 25 25 H 0.97000 * 120.00015 * 180.02562 * 8 7 5 26 26 H 1.09000 * 109.22598 * 289.49278 * 15 13 3 27 27 H 1.09002 * 109.22663 * 48.85196 * 15 13 3 28 28 H 1.08996 * 109.39079 * 190.82497 * 16 15 13 29 29 H 1.08999 * 109.38961 * 310.52872 * 16 15 13 30 30 H 1.08996 * 109.57437 * 56.78553 * 17 16 15 31 31 H 1.09005 * 109.57461 * 177.04175 * 17 16 15 32 32 H 1.09003 * 109.57956 * 302.98757 * 19 13 3 33 33 H 1.09003 * 109.57439 * 63.37294 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6088 1.9802 -0.8445 5 6 1.6357 2.1183 1.2849 6 1 1.9014 1.6766 2.2340 7 6 0.9269 3.3003 1.2488 8 7 0.6343 3.9260 2.3679 9 14 0.3823 4.0132 -0.3896 10 1 -0.8989 3.3852 -0.8014 11 1 0.1934 5.4798 -0.2531 12 1 1.4196 3.7412 -1.4171 13 6 3.5653 1.4442 -0.1193 14 1 3.9949 0.9062 0.7258 15 6 4.0722 2.8833 -0.1142 16 6 5.5901 2.9207 0.0373 17 6 6.2557 2.4145 -1.2452 18 16 5.7882 0.6772 -1.5029 19 6 3.9740 0.7530 -1.4227 20 1 -0.3633 -1.0245 0.0812 21 1 -0.3634 0.5825 0.8467 22 1 -0.3633 0.4419 -0.9278 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5137 0.8901 25 1 0.1353 4.7574 2.3426 26 1 3.7930 3.3655 -1.0510 27 1 3.6153 3.4219 0.7161 28 1 5.9093 3.9447 0.2309 29 1 5.8861 2.2867 0.8731 30 1 5.9191 3.0128 -2.0919 31 1 7.3387 2.4931 -1.1501 32 1 3.5661 -0.2577 -1.4436 33 1 3.5931 1.3202 -2.2719 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260451449.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:52 Heat of formation + Delta-G solvation = -48.901256 kcal Electronic energy + Delta-G solvation = -13201.746945 eV Core-core repulsion = 11158.629048 eV Total energy + Delta-G solvation = -2043.117896 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.15552 -35.69335 -34.02096 -32.00528 -29.23486 -27.70572 -25.27911 -23.53013 -21.45473 -20.66010 -19.20201 -17.49395 -16.25351 -15.99719 -15.59061 -15.05931 -14.75280 -14.67988 -14.30235 -13.98962 -13.91292 -13.52286 -12.90651 -12.70320 -12.39809 -12.29776 -12.13642 -12.03110 -11.71576 -11.68210 -11.24265 -10.94098 -10.79614 -10.48381 -10.39554 -8.60780 -8.22088 -6.20358 0.94176 1.33207 1.35495 1.43004 1.64875 2.37025 3.16003 3.81537 3.91995 4.04993 4.15567 4.31614 4.39221 4.51272 4.59247 4.68492 4.73496 4.76995 4.85750 4.90315 5.10265 5.15257 5.19432 5.35865 5.43255 5.51954 5.54425 5.67840 5.75423 5.81851 6.41359 6.84355 7.42227 8.95349 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.031256 B = 0.012014 C = 0.010079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.599309 B = 2330.150873 C = 2777.322308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.109 4.109 3 C 0.012 3.988 4 H 0.035 0.965 5 C -0.479 4.479 6 H 0.028 0.972 7 C 0.022 3.978 8 N -0.953 5.953 9 Si 0.920 3.080 10 H -0.270 1.270 11 H -0.297 1.297 12 H -0.241 1.241 13 C -0.068 4.068 14 H 0.057 0.943 15 C -0.120 4.120 16 C -0.116 4.116 17 C -0.067 4.067 18 S -0.308 6.308 19 C -0.066 4.066 20 H 0.060 0.940 21 H 0.036 0.964 22 H 0.044 0.956 23 H 0.065 0.935 24 H 0.043 0.957 25 H 0.261 0.739 26 H 0.048 0.952 27 H 0.058 0.942 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.120 0.880 32 H 0.111 0.889 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.502 -3.722 -9.652 12.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.147 4.147 3 C -0.008 4.008 4 H 0.053 0.947 5 C -0.518 4.518 6 H 0.046 0.954 7 C -0.175 4.175 8 N -0.594 5.594 9 Si 0.746 3.254 10 H -0.195 1.195 11 H -0.224 1.224 12 H -0.165 1.165 13 C -0.088 4.088 14 H 0.075 0.925 15 C -0.157 4.157 16 C -0.154 4.154 17 C -0.215 4.215 18 S -0.081 6.081 19 C -0.213 4.213 20 H 0.079 0.921 21 H 0.055 0.945 22 H 0.063 0.937 23 H 0.084 0.916 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.100 0.900 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.138 0.862 32 H 0.129 0.871 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.117 -4.473 -9.783 13.476 hybrid contribution -1.417 1.703 0.163 2.221 sum 6.701 -2.770 -9.620 12.046 Atomic orbital electron populations 1.21660 0.96697 1.00711 1.00792 1.21593 0.95679 0.97270 1.00165 1.19387 0.91854 0.94306 0.95301 0.94682 1.21006 1.32665 1.05779 0.92318 0.95370 1.25724 0.96085 0.97082 0.98564 1.70046 1.42333 1.18287 1.28782 0.86171 0.80011 0.76934 0.82248 1.19489 1.22415 1.16477 1.21270 0.97509 0.95090 0.94956 0.92491 1.21494 0.95406 0.97297 1.01547 1.21679 0.94636 1.02176 0.96947 1.23453 1.04473 0.92827 1.00701 1.86565 1.09577 1.16467 1.95449 1.23660 0.91659 1.05310 1.00709 0.92057 0.94478 0.93711 0.91608 0.93814 0.92994 0.93311 0.92370 0.89988 0.91596 0.89407 0.86201 0.87084 0.90150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.22 9.80 71.98 0.71 -4.52 16 2 C -0.11 -4.08 5.17 30.59 0.16 -3.92 16 3 C 0.01 0.51 1.34 -11.54 -0.02 0.50 16 4 H 0.04 1.51 4.55 -2.38 -0.01 1.50 16 5 C -0.48 -25.46 6.40 25.60 0.16 -25.29 16 6 H 0.03 1.71 8.06 -2.91 -0.02 1.68 16 7 C 0.02 1.21 5.21 84.65 0.44 1.65 16 8 N -0.95 -58.01 13.96 21.45 0.30 -57.71 16 9 Si 0.92 42.69 27.19 68.60 1.87 44.55 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 12 H -0.24 -10.17 6.45 99.48 0.64 -9.53 16 13 C -0.07 -2.54 1.62 -10.90 -0.02 -2.56 16 14 H 0.06 2.30 8.06 -2.39 -0.02 2.28 16 15 C -0.12 -4.45 4.84 30.32 0.15 -4.31 16 16 C -0.12 -3.41 5.75 30.49 0.18 -3.24 16 17 C -0.07 -1.68 6.45 72.02 0.46 -1.21 16 18 S -0.31 -8.97 22.33 -56.49 -1.26 -10.23 16 19 C -0.07 -2.04 5.45 72.01 0.39 -1.65 16 20 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 21 H 0.04 1.60 7.23 -2.39 -0.02 1.59 16 22 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.07 2.05 6.11 -2.39 -0.01 2.03 16 24 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 26 H 0.05 1.76 8.08 -2.39 -0.02 1.74 16 27 H 0.06 2.61 6.62 -2.39 -0.02 2.59 16 28 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.07 2.04 8.06 -2.39 -0.02 2.02 16 30 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.12 2.46 8.14 -2.38 -0.02 2.44 16 32 H 0.11 3.22 6.17 -2.39 -0.01 3.20 16 33 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -59.65 264.43 4.51 -55.13 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 1.00 Total: 12.80 kcal Atomic # 6 Polarization: -47.16 SS G_CDS: 2.62 Total: -44.55 kcal Atomic # 7 Polarization: -58.01 SS G_CDS: 0.30 Total: -57.71 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 1.87 Total: 44.55 kcal Atomic # 16 Polarization: -8.97 SS G_CDS: -1.26 Total: -10.23 kcal Total: -59.65 4.51 -55.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260451449.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.231 kcal (2) G-P(sol) polarization free energy of solvation -59.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds