Wall clock time and date at job start Mon Mar 30 2020 02:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47008 * 2 1 4 4 H 1.08999 * 109.46996 * 304.75971 * 3 2 1 5 5 C 1.50701 * 109.46746 * 184.76341 * 3 2 1 6 6 H 1.07996 * 119.99912 * 239.99572 * 5 3 2 7 7 C 1.37875 * 119.99919 * 60.00169 * 5 3 2 8 8 N 1.31514 * 120.00324 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99925 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46966 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47295 * 119.99652 * 9 7 5 12 12 H 1.48499 * 109.46933 * 239.99708 * 9 7 5 13 13 C 1.52999 * 109.47212 * 64.76503 * 3 2 1 14 14 H 1.08999 * 109.31064 * 305.87318 * 13 3 2 15 15 C 1.52578 * 109.39153 * 65.62660 * 13 3 2 16 16 C 1.52579 * 110.69252 * 190.80240 * 15 13 3 17 17 C 1.53103 * 109.95716 * 289.34649 * 16 15 13 18 18 S 1.81748 * 108.83892 * 63.02303 * 17 16 15 19 19 C 1.53023 * 109.32736 * 186.13237 * 13 3 2 20 20 H 1.08995 * 109.47429 * 293.90034 * 1 2 3 21 21 H 1.09005 * 109.46684 * 53.89835 * 1 2 3 22 22 H 1.08996 * 109.47325 * 173.89366 * 1 2 3 23 23 H 1.08991 * 109.47617 * 239.99226 * 2 1 3 24 24 H 1.09002 * 109.46645 * 119.99422 * 2 1 3 25 25 H 0.96994 * 120.00105 * 179.97438 * 8 7 5 26 26 H 1.08999 * 109.22594 * 70.50632 * 15 13 3 27 27 H 1.09003 * 109.22842 * 311.10593 * 15 13 3 28 28 H 1.08994 * 109.39028 * 49.49562 * 16 15 13 29 29 H 1.09003 * 109.39274 * 169.19894 * 16 15 13 30 30 H 1.08995 * 109.57689 * 182.83168 * 17 16 15 31 31 H 1.08999 * 109.57524 * 303.08880 * 17 16 15 32 32 H 1.09005 * 109.58974 * 57.00628 * 19 13 3 33 33 H 1.08997 * 109.59358 * 296.60490 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6086 1.9804 -0.8443 5 6 3.5423 1.4441 -0.1180 6 1 4.1446 1.8898 0.6598 7 6 4.1479 0.8767 -1.2190 8 7 3.4146 0.3336 -2.1660 9 14 6.0102 0.8793 -1.3656 10 1 6.5994 1.5470 -0.1772 11 1 6.5026 -0.5195 -1.4429 12 1 6.4090 1.6130 -2.5935 13 6 1.6301 2.1284 1.3048 14 1 0.5525 2.0340 1.4386 15 6 2.3463 1.4604 2.4748 16 6 1.7662 1.9349 3.8039 17 6 2.1595 3.3931 4.0548 18 16 1.4288 4.4304 2.7535 19 6 2.0065 3.6101 1.2380 20 1 -0.3634 0.4163 0.9395 21 1 -0.3633 0.6056 -0.8304 22 1 -0.3634 -1.0218 -0.1093 23 1 1.8934 -0.5139 -0.8898 24 1 1.8932 -0.5138 0.8901 25 1 3.8406 -0.0652 -2.9407 26 1 3.4066 1.7101 2.4365 27 1 2.2291 0.3794 2.3976 28 1 0.6797 1.8532 3.7743 29 1 2.1526 1.3119 4.6105 30 1 1.7848 3.7102 5.0280 31 1 3.2452 3.4874 4.0331 32 1 1.5317 4.0691 0.3708 33 1 3.0891 3.7091 1.1591 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260451459.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:53 Heat of formation + Delta-G solvation = -34.007550 kcal Electronic energy + Delta-G solvation = -13188.454023 eV Core-core repulsion = 11145.981966 eV Total energy + Delta-G solvation = -2042.472057 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -37.61814 -33.92958 -31.73966 -30.50180 -26.80426 -26.46453 -23.50538 -21.77525 -20.77290 -18.65652 -16.11529 -16.04324 -14.84233 -14.47793 -13.99886 -13.46183 -13.04206 -12.77727 -12.74066 -12.55615 -11.85615 -11.40417 -11.18060 -10.98259 -10.89674 -10.78544 -10.54128 -10.33701 -10.15185 -9.88921 -9.57617 -9.19792 -8.76385 -8.64162 -8.29243 -7.23629 -5.99277 -4.05543 2.29354 3.05012 3.27208 3.36218 3.38634 4.41987 5.14421 5.22724 5.31498 5.50012 5.65639 5.77224 5.91807 5.98957 6.19740 6.25442 6.29743 6.35576 6.51287 6.56607 6.60134 6.85736 6.86953 7.03916 7.09957 7.25686 7.46650 7.74123 7.97268 8.14241 8.45390 8.97726 9.59136 11.05692 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.029923 B = 0.010968 C = 0.009344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.510870 B = 2552.235494 C = 2995.797294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C 0.057 3.943 4 H 0.027 0.973 5 C -0.507 4.507 6 H 0.056 0.944 7 C 0.062 3.938 8 N -0.888 5.888 9 Si 0.884 3.116 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.285 1.285 13 C -0.076 4.076 14 H 0.059 0.941 15 C -0.114 4.114 16 C -0.124 4.124 17 C -0.071 4.071 18 S -0.317 6.317 19 C -0.049 4.049 20 H 0.037 0.963 21 H 0.043 0.957 22 H 0.031 0.969 23 H 0.092 0.908 24 H 0.034 0.966 25 H 0.258 0.742 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.843 2.267 8.227 8.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C 0.037 3.963 4 H 0.045 0.955 5 C -0.546 4.546 6 H 0.075 0.925 7 C -0.139 4.139 8 N -0.527 5.527 9 Si 0.712 3.288 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.096 4.096 14 H 0.077 0.923 15 C -0.152 4.152 16 C -0.162 4.162 17 C -0.219 4.219 18 S -0.090 6.090 19 C -0.196 4.196 20 H 0.056 0.944 21 H 0.062 0.938 22 H 0.050 0.950 23 H 0.111 0.889 24 H 0.053 0.947 25 H 0.068 0.932 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.109 0.891 31 H 0.096 0.904 32 H 0.113 0.887 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.457 3.134 8.185 9.422 hybrid contribution 1.825 -1.062 -0.310 2.134 sum -1.632 2.072 7.876 8.306 Atomic orbital electron populations 1.21877 0.99593 0.99170 0.99891 1.21648 0.91344 1.00406 1.02266 1.18742 0.95520 0.91749 0.90280 0.95520 1.21252 0.91464 1.36933 1.04915 0.92547 1.24957 0.97592 0.95481 0.95907 1.69882 1.34535 1.38775 1.09530 0.86662 0.86502 0.77634 0.77968 1.19899 1.21160 1.21141 1.21352 0.98460 0.91748 0.98067 0.92283 1.21539 1.00397 1.01269 0.91962 1.21810 1.01553 0.93747 0.99131 1.23315 1.02682 0.97500 0.98395 1.86491 1.72494 1.44429 1.05599 1.23560 1.04235 0.98398 0.93455 0.94438 0.93801 0.94998 0.88949 0.94698 0.93157 0.91516 0.90988 0.91434 0.91931 0.89053 0.90379 0.88745 0.89294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.51 37.16 0.35 -2.50 16 2 C -0.12 -2.68 5.12 -26.73 -0.14 -2.81 16 3 C 0.06 1.33 1.54 -91.77 -0.14 1.18 16 4 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 5 C -0.51 -12.92 7.25 -34.44 -0.25 -13.17 16 6 H 0.06 1.43 5.78 -52.49 -0.30 1.12 16 7 C 0.06 1.64 5.29 -17.82 -0.09 1.54 16 8 N -0.89 -24.59 11.29 55.43 0.63 -23.97 16 9 Si 0.88 20.74 29.54 -169.99 -5.02 15.72 16 10 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 13 C -0.08 -1.48 1.67 -90.82 -0.15 -1.64 16 14 H 0.06 1.14 6.33 -51.93 -0.33 0.81 16 15 C -0.11 -2.06 4.31 -27.16 -0.12 -2.17 16 16 C -0.12 -1.83 5.75 -26.89 -0.15 -1.99 16 17 C -0.07 -1.03 6.46 37.21 0.24 -0.78 16 18 S -0.32 -5.37 22.33 -107.50 -2.40 -7.77 16 19 C -0.05 -0.92 5.49 37.17 0.20 -0.72 16 20 H 0.04 0.66 6.73 -51.93 -0.35 0.31 16 21 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 22 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.09 2.38 5.96 -51.93 -0.31 2.07 16 24 H 0.03 0.77 6.18 -51.93 -0.32 0.44 16 25 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 26 H 0.07 1.29 6.63 -51.93 -0.34 0.94 16 27 H 0.07 1.34 6.04 -51.93 -0.31 1.03 16 28 H 0.07 1.00 8.06 -51.93 -0.42 0.59 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.09 1.79 8.14 -51.92 -0.42 1.36 16 33 H 0.09 1.77 7.12 -51.93 -0.37 1.40 16 LS Contribution 261.00 15.07 3.93 3.93 Total: -1.00 -26.21 261.00 -8.26 -34.47 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -5.15 Total: 0.67 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: -0.25 Total: -23.05 kcal Atomic # 7 Polarization: -24.59 SS G_CDS: 0.63 Total: -23.97 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: -5.37 SS G_CDS: -2.40 Total: -7.77 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -26.21 -8.26 -34.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260451459.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.462 kcal (2) G-P(sol) polarization free energy of solvation -26.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds