Wall clock time and date at job start Mon Mar 30 2020 02:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47008 * 2 1 4 4 H 1.08999 * 109.46996 * 304.75971 * 3 2 1 5 5 C 1.50701 * 109.46746 * 184.76341 * 3 2 1 6 6 H 1.07996 * 119.99912 * 239.99572 * 5 3 2 7 7 C 1.37875 * 119.99919 * 60.00169 * 5 3 2 8 8 N 1.31514 * 120.00324 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99925 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46966 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47295 * 119.99652 * 9 7 5 12 12 H 1.48499 * 109.46933 * 239.99708 * 9 7 5 13 13 C 1.52999 * 109.47212 * 64.76503 * 3 2 1 14 14 H 1.08999 * 109.31064 * 305.87318 * 13 3 2 15 15 C 1.52578 * 109.39153 * 65.62660 * 13 3 2 16 16 C 1.52579 * 110.69252 * 190.80240 * 15 13 3 17 17 C 1.53103 * 109.95716 * 289.34649 * 16 15 13 18 18 S 1.81748 * 108.83892 * 63.02303 * 17 16 15 19 19 C 1.53023 * 109.32736 * 186.13237 * 13 3 2 20 20 H 1.08995 * 109.47429 * 293.90034 * 1 2 3 21 21 H 1.09005 * 109.46684 * 53.89835 * 1 2 3 22 22 H 1.08996 * 109.47325 * 173.89366 * 1 2 3 23 23 H 1.08991 * 109.47617 * 239.99226 * 2 1 3 24 24 H 1.09002 * 109.46645 * 119.99422 * 2 1 3 25 25 H 0.96994 * 120.00105 * 179.97438 * 8 7 5 26 26 H 1.08999 * 109.22594 * 70.50632 * 15 13 3 27 27 H 1.09003 * 109.22842 * 311.10593 * 15 13 3 28 28 H 1.08994 * 109.39028 * 49.49562 * 16 15 13 29 29 H 1.09003 * 109.39274 * 169.19894 * 16 15 13 30 30 H 1.08995 * 109.57689 * 182.83168 * 17 16 15 31 31 H 1.08999 * 109.57524 * 303.08880 * 17 16 15 32 32 H 1.09005 * 109.58974 * 57.00628 * 19 13 3 33 33 H 1.08997 * 109.59358 * 296.60490 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6086 1.9804 -0.8443 5 6 3.5423 1.4441 -0.1180 6 1 4.1446 1.8898 0.6598 7 6 4.1479 0.8767 -1.2190 8 7 3.4146 0.3336 -2.1660 9 14 6.0102 0.8793 -1.3656 10 1 6.5994 1.5470 -0.1772 11 1 6.5026 -0.5195 -1.4429 12 1 6.4090 1.6130 -2.5935 13 6 1.6301 2.1284 1.3048 14 1 0.5525 2.0340 1.4386 15 6 2.3463 1.4604 2.4748 16 6 1.7662 1.9349 3.8039 17 6 2.1595 3.3931 4.0548 18 16 1.4288 4.4304 2.7535 19 6 2.0065 3.6101 1.2380 20 1 -0.3634 0.4163 0.9395 21 1 -0.3633 0.6056 -0.8304 22 1 -0.3634 -1.0218 -0.1093 23 1 1.8934 -0.5139 -0.8898 24 1 1.8932 -0.5138 0.8901 25 1 3.8406 -0.0652 -2.9407 26 1 3.4066 1.7101 2.4365 27 1 2.2291 0.3794 2.3976 28 1 0.6797 1.8532 3.7743 29 1 2.1526 1.3119 4.6105 30 1 1.7848 3.7102 5.0280 31 1 3.2452 3.4874 4.0331 32 1 1.5317 4.0691 0.3708 33 1 3.0891 3.7091 1.1591 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260451459.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:53 Heat of formation + Delta-G solvation = -46.373788 kcal Electronic energy + Delta-G solvation = -13188.990263 eV Core-core repulsion = 11145.981966 eV Total energy + Delta-G solvation = -2043.008297 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.23161 -35.52524 -33.60501 -32.03336 -28.59705 -27.89348 -25.32272 -23.27074 -22.26952 -20.42181 -18.00794 -17.44881 -16.56932 -16.10182 -15.50426 -15.03555 -14.58847 -14.44897 -14.09768 -14.03238 -13.44119 -13.06395 -12.99336 -12.72544 -12.51133 -12.26140 -12.20997 -11.97969 -11.81790 -11.56096 -11.22217 -10.82892 -10.50262 -10.33182 -10.26410 -8.59495 -8.02369 -6.13613 0.97298 1.38794 1.42853 1.51212 1.68965 2.45360 3.25012 3.90051 3.98291 4.12899 4.20686 4.45367 4.52402 4.63772 4.72218 4.72857 4.87458 4.88405 4.91432 5.06558 5.18525 5.28588 5.31063 5.42399 5.46859 5.59864 5.62705 5.76799 6.05613 6.24182 6.48489 6.98114 7.53308 9.01443 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.029923 B = 0.010968 C = 0.009344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.510870 B = 2552.235494 C = 2995.797294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.115 4.115 3 C 0.057 3.943 4 H -0.009 1.009 5 C -0.508 4.508 6 H 0.056 0.944 7 C 0.012 3.988 8 N -0.917 5.917 9 Si 0.940 3.060 10 H -0.267 1.267 11 H -0.285 1.285 12 H -0.287 1.287 13 C -0.067 4.067 14 H 0.065 0.935 15 C -0.110 4.110 16 C -0.116 4.116 17 C -0.066 4.066 18 S -0.317 6.317 19 C -0.049 4.049 20 H 0.056 0.944 21 H 0.035 0.965 22 H 0.048 0.952 23 H 0.057 0.943 24 H 0.038 0.962 25 H 0.256 0.744 26 H 0.050 0.950 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.121 0.879 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.981 2.433 10.414 11.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.153 4.153 3 C 0.037 3.963 4 H 0.009 0.991 5 C -0.547 4.547 6 H 0.074 0.926 7 C -0.186 4.186 8 N -0.558 5.558 9 Si 0.767 3.233 10 H -0.192 1.192 11 H -0.211 1.211 12 H -0.214 1.214 13 C -0.087 4.087 14 H 0.083 0.917 15 C -0.148 4.148 16 C -0.154 4.154 17 C -0.214 4.214 18 S -0.090 6.090 19 C -0.197 4.197 20 H 0.075 0.925 21 H 0.054 0.946 22 H 0.067 0.933 23 H 0.075 0.925 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.108 0.892 30 H 0.140 0.860 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.593 3.307 10.384 11.475 hybrid contribution 1.855 -1.092 -0.959 2.356 sum -1.739 2.215 9.425 9.837 Atomic orbital electron populations 1.21760 0.96950 1.00319 1.00578 1.21498 0.93731 0.99406 1.00660 1.18674 0.94224 0.92273 0.91167 0.99081 1.21551 0.92839 1.35792 1.04491 0.92595 1.25642 1.01262 0.95701 0.95994 1.70024 1.35883 1.39884 1.10006 0.85773 0.82210 0.77435 0.77836 1.19168 1.21087 1.21359 1.21203 0.98825 0.91924 0.96744 0.91711 1.21459 0.99389 1.00645 0.93277 1.21736 1.01738 0.94231 0.97714 1.23462 1.02875 0.96656 0.98441 1.86493 1.72498 1.44943 1.05039 1.23352 1.03094 0.98296 0.94989 0.92501 0.94622 0.93299 0.92459 0.94311 0.93441 0.93145 0.91742 0.90892 0.89185 0.86038 0.90073 0.89737 0.90969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.22 9.51 71.98 0.68 -4.54 16 2 C -0.11 -5.21 5.12 30.59 0.16 -5.06 16 3 C 0.06 2.68 1.54 -11.54 -0.02 2.66 16 4 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 5 C -0.51 -26.27 7.25 25.60 0.19 -26.09 16 6 H 0.06 2.84 5.78 -2.91 -0.02 2.83 16 7 C 0.01 0.64 5.29 84.65 0.45 1.09 16 8 N -0.92 -52.20 11.29 21.45 0.24 -51.96 16 9 Si 0.94 43.03 29.54 68.60 2.03 45.06 16 10 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 13 C -0.07 -2.57 1.67 -10.93 -0.02 -2.58 16 14 H 0.06 2.40 6.33 -2.39 -0.02 2.39 16 15 C -0.11 -3.78 4.31 30.31 0.13 -3.65 16 16 C -0.12 -3.01 5.75 30.49 0.18 -2.83 16 17 C -0.07 -1.69 6.46 72.02 0.46 -1.22 16 18 S -0.32 -10.06 22.33 -56.49 -1.26 -11.32 16 19 C -0.05 -1.85 5.49 71.99 0.40 -1.45 16 20 H 0.06 1.90 6.73 -2.39 -0.02 1.89 16 21 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 22 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 23 H 0.06 3.03 5.96 -2.39 -0.01 3.01 16 24 H 0.04 1.69 6.18 -2.39 -0.01 1.68 16 25 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 26 H 0.05 1.88 6.63 -2.39 -0.02 1.87 16 27 H 0.06 2.30 6.04 -2.39 -0.01 2.28 16 28 H 0.07 1.87 8.06 -2.39 -0.02 1.85 16 29 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.08 3.26 8.14 -2.38 -0.02 3.24 16 33 H 0.07 2.90 7.12 -2.39 -0.02 2.88 16 Total: -1.00 -56.31 261.00 4.68 -51.63 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: 1.07 Total: 10.26 kcal Atomic # 6 Polarization: -46.27 SS G_CDS: 2.60 Total: -43.67 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: 0.24 Total: -51.96 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Atomic # 16 Polarization: -10.06 SS G_CDS: -1.26 Total: -11.32 kcal Total: -56.31 4.68 -51.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260451459.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.253 kcal (2) G-P(sol) polarization free energy of solvation -56.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds