Wall clock time and date at job start Mon Mar 30 2020 02:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34630 * 117.00276 * 2 1 4 4 O 1.21514 * 119.99753 * 359.97438 * 3 2 1 5 5 N 1.34776 * 120.00609 * 179.97438 * 3 2 1 6 6 C 1.47435 * 125.64423 * 0.04090 * 5 3 2 7 7 C 1.55127 * 104.94145 * 203.96962 * 6 5 3 8 8 C 1.55165 * 101.48382 * 323.21987 * 7 6 5 9 9 N 1.46897 * 110.71896 * 276.83556 * 8 7 6 10 10 C 1.50700 * 110.71566 * 153.73613 * 8 7 6 11 11 H 1.07994 * 120.00266 * 3.17057 * 10 8 7 12 12 C 1.37878 * 119.99358 * 183.16859 * 10 8 7 13 13 N 1.31510 * 120.00214 * 5.76813 * 12 10 8 14 14 Si 1.86807 * 119.99577 * 185.77014 * 12 10 8 15 15 H 1.48497 * 109.47103 * 84.98796 * 14 12 10 16 16 H 1.48501 * 109.46908 * 324.98512 * 14 12 10 17 17 H 1.48498 * 109.46994 * 204.98621 * 14 12 10 18 18 C 1.47020 * 125.65535 * 180.02562 * 5 3 2 19 19 H 1.09004 * 109.46915 * 60.00323 * 1 2 3 20 20 H 1.09004 * 109.47555 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47570 * 300.00066 * 1 2 3 22 22 H 1.09001 * 110.36620 * 322.92947 * 6 5 3 23 23 H 1.08995 * 110.36490 * 85.25144 * 6 5 3 24 24 H 1.08999 * 111.15821 * 205.13212 * 7 6 5 25 25 H 1.08999 * 110.93708 * 81.21199 * 7 6 5 26 26 H 1.00904 * 110.99886 * 170.98446 * 9 8 7 27 27 H 1.00902 * 110.99581 * 294.92749 * 9 8 7 28 28 H 0.97007 * 119.99545 * 179.97438 * 13 12 10 29 29 H 1.09004 * 109.88236 * 59.55465 * 18 5 3 30 30 H 1.09006 * 109.87680 * 298.39502 * 18 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0632 1.1995 0.0000 4 8 1.4014 2.2186 -0.0005 5 7 3.4091 1.2701 0.0005 6 6 4.3299 0.1187 0.0003 7 6 5.6491 0.6613 0.6099 8 6 5.6901 2.0990 0.0276 9 7 6.2525 2.0941 -1.3295 10 6 6.4790 3.0159 0.9264 11 1 6.9633 2.6226 1.8079 12 6 6.5824 4.3569 0.6232 13 7 5.9014 4.8578 -0.3843 14 14 7.6897 5.4625 1.6436 15 1 9.0796 5.3839 1.1266 16 1 7.6627 5.0182 3.0604 17 1 7.2071 6.8640 1.5551 18 6 4.2023 2.5080 0.0011 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8899 22 1 3.9298 -0.6871 0.6157 23 1 4.5011 -0.2299 -1.0182 24 1 6.5068 0.0789 0.2735 25 1 5.5955 0.6821 1.6984 26 1 6.1472 2.9969 -1.7678 27 1 7.2200 1.8080 -1.3189 28 1 5.9740 5.8014 -0.5972 29 1 3.9647 3.1001 0.8849 30 1 3.9922 3.0833 -0.9006 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260460248.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:46 Heat of formation + Delta-G solvation = -78.578915 kcal Electronic energy + Delta-G solvation = -14913.675642 eV Core-core repulsion = 12322.977612 eV Total energy + Delta-G solvation = -2590.698031 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.85220 -37.75374 -35.61815 -33.66994 -31.36739 -29.02153 -27.68718 -26.70695 -24.92990 -22.55310 -20.04195 -19.08244 -17.36213 -16.54309 -16.29624 -16.04643 -14.88157 -14.41700 -13.95983 -13.79432 -13.13833 -12.54715 -12.43503 -12.38338 -11.68135 -11.55075 -11.28497 -11.07414 -10.69950 -10.60947 -10.38874 -10.27293 -9.93863 -9.86949 -9.39081 -8.71068 -7.87971 -7.33361 -6.19851 -4.33973 2.76287 3.19682 3.27976 3.29933 3.44889 4.26428 4.63713 5.04249 5.36732 5.43086 5.55964 5.65007 5.83250 5.95646 6.09771 6.25086 6.59181 6.67787 6.83394 6.95445 7.02924 7.27378 7.39061 7.68086 7.99039 8.26536 8.60680 8.80300 8.91383 8.95766 9.37360 10.80538 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.046613 B = 0.008770 C = 0.008103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.540672 B = 3191.826817 C = 3454.566641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 O -0.377 6.377 3 C 0.652 3.348 4 O -0.584 6.584 5 N -0.593 5.593 6 C 0.112 3.888 7 C -0.119 4.119 8 C 0.233 3.767 9 N -0.843 5.843 10 C -0.547 4.547 11 H 0.062 0.938 12 C 0.070 3.930 13 N -0.886 5.886 14 Si 0.898 3.102 15 H -0.279 1.279 16 H -0.274 1.274 17 H -0.286 1.286 18 C 0.158 3.842 19 H 0.058 0.942 20 H 0.095 0.905 21 H 0.058 0.942 22 H 0.060 0.940 23 H 0.066 0.934 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.351 0.649 27 H 0.320 0.680 28 H 0.268 0.732 29 H 0.063 0.937 30 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.540 -8.223 0.327 8.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.292 6.292 3 C 0.406 3.594 4 O -0.474 6.474 5 N -0.333 5.333 6 C -0.011 4.011 7 C -0.158 4.158 8 C 0.141 3.859 9 N -0.373 5.373 10 C -0.587 4.587 11 H 0.080 0.920 12 C -0.134 4.134 13 N -0.523 5.523 14 Si 0.726 3.274 15 H -0.205 1.205 16 H -0.199 1.199 17 H -0.211 1.211 18 C 0.038 3.962 19 H 0.077 0.923 20 H 0.114 0.886 21 H 0.077 0.923 22 H 0.078 0.922 23 H 0.085 0.915 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.166 0.834 27 H 0.130 0.870 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.498 -8.306 0.057 9.446 hybrid contribution 1.016 1.527 0.897 2.041 sum -3.483 -6.779 0.954 7.681 Atomic orbital electron populations 1.23041 0.75708 1.02582 1.02347 1.86231 1.23173 1.32041 1.87737 1.17707 0.82614 0.81675 0.77428 1.90951 1.64133 1.34915 1.57412 1.47643 1.00857 1.11333 1.73462 1.22269 0.90161 0.87999 1.00635 1.22839 0.95000 0.98384 0.99533 1.19212 0.89556 0.89884 0.87288 1.59357 1.21378 1.36136 1.20400 1.21661 1.32834 0.93330 1.10871 0.91986 1.25061 0.95081 0.98034 0.95258 1.69816 1.39642 1.14328 1.28497 0.86506 0.80637 0.79634 0.80638 1.20493 1.19885 1.21142 1.22307 0.90010 0.82079 1.01799 0.92283 0.88644 0.92320 0.92157 0.91548 0.91076 0.91517 0.83385 0.87049 0.92222 0.91824 0.91428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.77 10.56 101.05 1.07 1.84 16 2 O -0.38 -6.78 10.10 -40.30 -0.41 -7.18 16 3 C 0.65 14.24 8.62 54.05 0.47 14.71 16 4 O -0.58 -14.37 16.46 -19.28 -0.32 -14.68 16 5 N -0.59 -13.01 3.33 -176.16 -0.59 -13.59 16 6 C 0.11 2.09 6.91 -2.41 -0.02 2.07 16 7 C -0.12 -2.32 6.21 -24.46 -0.15 -2.47 16 8 C 0.23 5.38 0.67 -130.92 -0.09 5.29 16 9 N -0.84 -18.64 8.92 1.29 0.01 -18.63 16 10 C -0.55 -13.84 8.04 -34.44 -0.28 -14.12 16 11 H 0.06 1.57 7.78 -52.49 -0.41 1.16 16 12 C 0.07 1.79 5.28 -17.82 -0.09 1.70 16 13 N -0.89 -23.42 10.90 55.43 0.60 -22.81 16 14 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 15 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 16 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 18 C 0.16 3.89 5.18 -3.07 -0.02 3.87 16 19 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 20 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 21 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.06 0.99 8.04 -51.93 -0.42 0.58 16 23 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 24 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 25 H 0.07 1.30 8.04 -51.93 -0.42 0.88 16 26 H 0.35 8.44 7.33 -39.29 -0.29 8.15 16 27 H 0.32 6.62 9.03 -39.29 -0.35 6.27 16 28 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 29 H 0.06 1.72 7.81 -51.93 -0.41 1.31 16 30 H 0.07 1.82 7.79 -51.93 -0.40 1.42 16 LS Contribution 256.85 15.07 3.87 3.87 Total: -1.00 -28.66 256.85 -4.90 -33.56 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -3.94 Total: 11.36 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: 0.89 Total: 12.89 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: 0.03 Total: -55.03 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.72 Total: -21.87 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -28.66 -4.90 -33.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260460248.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.017 kcal (2) G-P(sol) polarization free energy of solvation -28.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds