Wall clock time and date at job start Mon Mar 30 2020 02:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34630 * 117.00276 * 2 1 4 4 O 1.21514 * 119.99753 * 359.97438 * 3 2 1 5 5 N 1.34776 * 120.00609 * 179.97438 * 3 2 1 6 6 C 1.47435 * 125.64423 * 0.04090 * 5 3 2 7 7 C 1.55127 * 104.94145 * 203.96962 * 6 5 3 8 8 C 1.55165 * 101.48382 * 323.21987 * 7 6 5 9 9 N 1.46897 * 110.71896 * 276.83556 * 8 7 6 10 10 C 1.50700 * 110.71566 * 153.73613 * 8 7 6 11 11 H 1.07994 * 120.00266 * 3.17057 * 10 8 7 12 12 C 1.37878 * 119.99358 * 183.16859 * 10 8 7 13 13 N 1.31510 * 120.00214 * 5.76813 * 12 10 8 14 14 Si 1.86807 * 119.99577 * 185.77014 * 12 10 8 15 15 H 1.48497 * 109.47103 * 84.98796 * 14 12 10 16 16 H 1.48501 * 109.46908 * 324.98512 * 14 12 10 17 17 H 1.48498 * 109.46994 * 204.98621 * 14 12 10 18 18 C 1.47020 * 125.65535 * 180.02562 * 5 3 2 19 19 H 1.09004 * 109.46915 * 60.00323 * 1 2 3 20 20 H 1.09004 * 109.47555 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47570 * 300.00066 * 1 2 3 22 22 H 1.09001 * 110.36620 * 322.92947 * 6 5 3 23 23 H 1.08995 * 110.36490 * 85.25144 * 6 5 3 24 24 H 1.08999 * 111.15821 * 205.13212 * 7 6 5 25 25 H 1.08999 * 110.93708 * 81.21199 * 7 6 5 26 26 H 1.00904 * 110.99886 * 170.98446 * 9 8 7 27 27 H 1.00902 * 110.99581 * 294.92749 * 9 8 7 28 28 H 0.97007 * 119.99545 * 179.97438 * 13 12 10 29 29 H 1.09004 * 109.88236 * 59.55465 * 18 5 3 30 30 H 1.09006 * 109.87680 * 298.39502 * 18 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0632 1.1995 0.0000 4 8 1.4014 2.2186 -0.0005 5 7 3.4091 1.2701 0.0005 6 6 4.3299 0.1187 0.0003 7 6 5.6491 0.6613 0.6099 8 6 5.6901 2.0990 0.0276 9 7 6.2525 2.0941 -1.3295 10 6 6.4790 3.0159 0.9264 11 1 6.9633 2.6226 1.8079 12 6 6.5824 4.3569 0.6232 13 7 5.9014 4.8578 -0.3843 14 14 7.6897 5.4625 1.6436 15 1 9.0796 5.3839 1.1266 16 1 7.6627 5.0182 3.0604 17 1 7.2071 6.8640 1.5551 18 6 4.2023 2.5080 0.0011 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8899 22 1 3.9298 -0.6871 0.6157 23 1 4.5011 -0.2299 -1.0182 24 1 6.5068 0.0789 0.2735 25 1 5.5955 0.6821 1.6984 26 1 6.1472 2.9969 -1.7678 27 1 7.2200 1.8080 -1.3189 28 1 5.9740 5.8014 -0.5972 29 1 3.9647 3.1001 0.8849 30 1 3.9922 3.0833 -0.9006 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260460248.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:45 Heat of formation + Delta-G solvation = -100.017964 kcal Electronic energy + Delta-G solvation = -14914.605309 eV Core-core repulsion = 12322.977612 eV Total energy + Delta-G solvation = -2591.627698 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.49379 -39.42832 -37.25125 -35.50496 -33.23487 -30.66646 -29.23443 -28.28676 -26.75221 -24.19002 -21.62822 -20.90712 -19.04033 -18.34263 -17.94425 -17.65137 -16.67494 -16.08959 -15.73701 -15.26342 -14.70671 -14.32632 -14.07481 -13.88742 -13.38262 -13.18457 -12.87756 -12.81393 -12.55951 -12.39798 -11.95035 -11.77821 -11.74047 -11.61788 -11.18131 -10.66409 -9.65041 -9.18162 -8.13349 -6.34816 1.21031 1.41189 1.43965 1.51436 1.73946 2.39020 3.07767 3.15328 3.97098 4.16103 4.31291 4.37153 4.39889 4.46498 4.65868 4.75204 4.81218 5.07798 5.22263 5.24765 5.27287 5.45239 5.53434 5.69896 6.07997 6.57350 6.68836 6.91854 7.11695 7.24410 7.40685 8.83533 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.046613 B = 0.008770 C = 0.008103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.540672 B = 3191.826817 C = 3454.566641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.370 6.370 3 C 0.650 3.350 4 O -0.621 6.621 5 N -0.600 5.600 6 C 0.116 3.884 7 C -0.110 4.110 8 C 0.225 3.775 9 N -0.833 5.833 10 C -0.559 4.559 11 H 0.061 0.939 12 C 0.028 3.972 13 N -0.908 5.908 14 Si 0.955 3.045 15 H -0.271 1.271 16 H -0.273 1.273 17 H -0.291 1.291 18 C 0.174 3.826 19 H 0.057 0.943 20 H 0.144 0.856 21 H 0.057 0.943 22 H 0.090 0.910 23 H 0.076 0.924 24 H 0.095 0.905 25 H 0.066 0.934 26 H 0.339 0.661 27 H 0.329 0.671 28 H 0.265 0.735 29 H 0.027 0.973 30 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.238 -10.023 0.725 10.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.283 6.283 3 C 0.405 3.595 4 O -0.514 6.514 5 N -0.339 5.339 6 C -0.006 4.006 7 C -0.149 4.149 8 C 0.132 3.868 9 N -0.361 5.361 10 C -0.599 4.599 11 H 0.079 0.921 12 C -0.174 4.174 13 N -0.546 5.546 14 Si 0.781 3.219 15 H -0.197 1.197 16 H -0.198 1.198 17 H -0.217 1.217 18 C 0.052 3.948 19 H 0.075 0.925 20 H 0.162 0.838 21 H 0.076 0.924 22 H 0.108 0.892 23 H 0.094 0.906 24 H 0.113 0.887 25 H 0.085 0.915 26 H 0.152 0.848 27 H 0.140 0.860 28 H 0.075 0.925 29 H 0.046 0.954 30 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -4.190 -10.168 0.460 11.007 hybrid contribution 0.828 2.040 0.773 2.334 sum -3.363 -8.127 1.233 8.881 Atomic orbital electron populations 1.23511 0.72977 1.05741 1.02306 1.86242 1.25676 1.29341 1.87052 1.17856 0.82560 0.82338 0.76741 1.90920 1.65020 1.36575 1.58889 1.47648 1.01450 1.11439 1.73405 1.22430 0.89015 0.87383 1.01751 1.22801 0.96526 0.96107 0.99458 1.19270 0.88055 0.91926 0.87543 1.59338 1.22021 1.35146 1.19631 1.21972 1.32853 0.93964 1.11113 0.92108 1.25716 0.96166 0.99338 0.96189 1.69935 1.40675 1.14301 1.29720 0.85616 0.79326 0.77630 0.79290 1.19652 1.19780 1.21714 1.21877 0.91737 0.82814 0.98348 0.92451 0.83796 0.92391 0.89196 0.90621 0.88656 0.91494 0.84778 0.86027 0.92524 0.95402 0.94741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.16 10.56 113.37 1.20 2.36 16 2 O -0.37 -12.46 10.10 -55.39 -0.56 -13.02 16 3 C 0.65 28.05 8.62 129.79 1.12 29.17 16 4 O -0.62 -30.97 16.46 19.80 0.33 -30.64 16 5 N -0.60 -25.96 3.33 -941.64 -3.13 -29.09 16 6 C 0.12 4.01 6.91 86.93 0.60 4.61 16 7 C -0.11 -4.06 6.21 32.07 0.20 -3.86 16 8 C 0.22 10.27 0.67 3.97 0.00 10.27 16 9 N -0.83 -36.30 8.92 -149.82 -1.34 -37.64 16 10 C -0.56 -28.13 8.04 25.60 0.21 -27.93 16 11 H 0.06 3.01 7.78 -2.91 -0.02 2.99 16 12 C 0.03 1.42 5.28 84.66 0.45 1.86 16 13 N -0.91 -48.92 10.90 21.45 0.23 -48.68 16 14 Si 0.96 41.51 29.54 68.60 2.03 43.54 16 15 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 16 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 17 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 18 C 0.17 8.73 5.18 86.73 0.45 9.17 16 19 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 20 H 0.14 2.07 8.14 -2.38 -0.02 2.05 16 21 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 22 H 0.09 2.62 8.04 -2.39 -0.02 2.60 16 23 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 24 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 25 H 0.07 2.45 8.04 -2.39 -0.02 2.43 16 26 H 0.34 16.43 7.33 -89.69 -0.66 15.77 16 27 H 0.33 13.18 9.03 -89.69 -0.81 12.37 16 28 H 0.27 13.88 8.31 -92.70 -0.77 13.11 16 29 H 0.03 1.56 7.81 -2.38 -0.02 1.54 16 30 H 0.03 1.92 7.79 -2.38 -0.02 1.90 16 Total: -1.00 -62.05 256.85 1.46 -60.59 By element: Atomic # 1 Polarization: 29.60 SS G_CDS: -0.31 Total: 29.28 kcal Atomic # 6 Polarization: 21.44 SS G_CDS: 4.22 Total: 25.66 kcal Atomic # 7 Polarization: -111.17 SS G_CDS: -4.24 Total: -115.41 kcal Atomic # 8 Polarization: -43.43 SS G_CDS: -0.23 Total: -43.66 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Total: -62.05 1.46 -60.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260460248.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.432 kcal (2) G-P(sol) polarization free energy of solvation -62.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds