Wall clock time and date at job start Mon Mar 30 2020 02:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34638 * 117.00542 * 2 1 4 4 O 1.21511 * 119.99304 * 359.97438 * 3 2 1 5 5 N 1.34771 * 120.00361 * 179.97438 * 3 2 1 6 6 C 1.47019 * 125.64805 * 0.02562 * 5 3 2 7 7 C 1.54326 * 107.27342 * 181.02236 * 6 5 3 8 8 C 1.55156 * 102.94134 * 22.19214 * 7 6 5 9 9 N 1.46899 * 111.00827 * 82.56979 * 8 7 6 10 10 C 1.50695 * 111.00682 * 206.38919 * 8 7 6 11 11 H 1.08007 * 120.00269 * 359.97438 * 10 8 7 12 12 C 1.37878 * 120.00496 * 179.97438 * 10 8 7 13 13 N 1.31522 * 119.99669 * 359.97438 * 12 10 8 14 14 Si 1.86796 * 120.00341 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47262 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.47099 * 120.00520 * 14 12 10 17 17 H 1.48504 * 109.47079 * 240.00099 * 14 12 10 18 18 C 1.47429 * 125.64940 * 179.71181 * 5 3 2 19 19 H 1.09002 * 109.47379 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46782 * 60.00152 * 1 2 3 21 21 H 1.09004 * 109.47085 * 300.00272 * 1 2 3 22 22 H 1.09002 * 109.88643 * 300.43900 * 6 5 3 23 23 H 1.09006 * 109.88551 * 61.45200 * 6 5 3 24 24 H 1.09001 * 110.72570 * 140.55321 * 7 6 5 25 25 H 1.09003 * 110.72100 * 263.83259 * 7 6 5 26 26 H 1.00899 * 111.00318 * 179.97438 * 9 8 7 27 27 H 1.00896 * 110.99969 * 303.96274 * 9 8 7 28 28 H 0.96996 * 119.99674 * 179.97438 * 13 12 10 29 29 H 1.08996 * 110.36651 * 274.75134 * 18 5 3 30 30 H 1.09000 * 110.36266 * 37.07144 * 18 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2186 -0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.3274 0.1218 0.0006 7 6 5.7643 0.6841 0.0276 8 6 5.5693 2.1080 0.6122 9 7 5.4978 2.0698 2.0790 10 6 6.6640 3.0356 0.1517 11 1 7.4434 2.6696 -0.5004 12 6 6.6708 4.3517 0.5626 13 7 5.7215 4.7977 1.3563 14 14 8.0281 5.5013 -0.0077 15 1 8.9670 4.7605 -0.8880 16 1 7.4332 6.6343 -0.7612 17 1 8.7630 6.0235 1.1725 18 6 4.2046 2.5114 -0.0054 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 0.5139 0.8900 22 1 4.1530 -0.4923 0.8841 23 1 4.1766 -0.4735 -0.9001 24 1 6.4011 0.0842 0.6777 25 1 6.1778 0.7342 -0.9797 26 1 5.3715 2.9958 2.4591 27 1 4.7661 1.4482 2.3892 28 1 5.7265 5.7234 1.6457 29 1 4.3387 2.8711 -1.0256 30 1 3.7223 3.2738 0.6063 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260460249.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:47 Heat of formation + Delta-G solvation = -76.303821 kcal Electronic energy + Delta-G solvation = -14949.983774 eV Core-core repulsion = 12359.384398 eV Total energy + Delta-G solvation = -2590.599375 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.98029 -37.90153 -35.70880 -33.56824 -31.30515 -29.16966 -27.70490 -26.88755 -24.91885 -22.58666 -20.00093 -19.23903 -17.51754 -16.57938 -16.36778 -16.00369 -14.90226 -14.44003 -13.95480 -13.64566 -13.42633 -12.77611 -12.38715 -12.32529 -11.91425 -11.61720 -11.48319 -11.01431 -10.73079 -10.55610 -10.46352 -10.32574 -10.01677 -9.58435 -9.26335 -8.70508 -8.18086 -7.13483 -6.20561 -4.25312 2.65628 3.24835 3.32564 3.33527 3.36645 4.31775 4.53100 5.08447 5.30023 5.36126 5.48726 5.58496 5.70585 5.88156 6.13197 6.20070 6.51093 6.61680 6.76855 6.84601 6.90042 6.92492 7.27416 7.77049 8.06994 8.12129 8.58285 8.79610 8.93802 9.13457 9.44648 10.88845 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.051038 B = 0.008650 C = 0.008042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.481126 B = 3236.125386 C = 3480.791942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 O -0.377 6.377 3 C 0.651 3.349 4 O -0.581 6.581 5 N -0.597 5.597 6 C 0.104 3.896 7 C -0.123 4.123 8 C 0.245 3.755 9 N -0.832 5.832 10 C -0.499 4.499 11 H 0.067 0.933 12 C 0.071 3.929 13 N -0.893 5.893 14 Si 0.903 3.097 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.283 1.283 18 C 0.101 3.899 19 H 0.096 0.904 20 H 0.058 0.942 21 H 0.059 0.941 22 H 0.060 0.940 23 H 0.056 0.944 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.364 0.636 27 H 0.296 0.704 28 H 0.266 0.734 29 H 0.059 0.941 30 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.852 -8.208 -1.969 9.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.291 6.291 3 C 0.405 3.595 4 O -0.472 6.472 5 N -0.338 5.338 6 C -0.019 4.019 7 C -0.162 4.162 8 C 0.151 3.849 9 N -0.365 5.365 10 C -0.538 4.538 11 H 0.086 0.914 12 C -0.132 4.132 13 N -0.532 5.532 14 Si 0.731 3.269 15 H -0.196 1.196 16 H -0.210 1.210 17 H -0.208 1.208 18 C -0.021 4.021 19 H 0.114 0.886 20 H 0.077 0.923 21 H 0.078 0.922 22 H 0.078 0.922 23 H 0.074 0.926 24 H 0.096 0.904 25 H 0.089 0.911 26 H 0.184 0.816 27 H 0.105 0.895 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.497 -8.019 -1.894 9.387 hybrid contribution -0.648 1.083 -0.429 1.333 sum -5.145 -6.936 -2.323 8.943 Atomic orbital electron populations 1.23060 0.75600 1.02682 1.02382 1.86246 1.23267 1.31978 1.87614 1.17801 0.82665 0.81736 0.77249 1.90959 1.64064 1.34952 1.57188 1.47724 1.00862 1.11282 1.73882 1.22066 0.90994 0.88314 1.00477 1.22773 0.92808 0.98999 1.01574 1.19477 0.89919 0.90013 0.85486 1.59256 1.50575 1.17344 1.09287 1.20897 1.09578 0.93685 1.29650 0.91444 1.25049 0.95765 0.98215 0.94201 1.69615 1.32728 1.16563 1.34308 0.86359 0.81664 0.80396 0.78501 1.19640 1.21030 1.20848 1.23777 0.93014 0.83534 1.01746 0.88555 0.92296 0.92234 0.92197 0.92568 0.90430 0.91082 0.81639 0.89461 0.92344 0.92275 0.90162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.74 10.56 101.05 1.07 1.81 16 2 O -0.38 -6.54 10.17 -40.32 -0.41 -6.95 16 3 C 0.65 13.74 8.62 54.05 0.47 14.20 16 4 O -0.58 -13.93 16.39 -19.28 -0.32 -14.24 16 5 N -0.60 -12.51 3.32 -176.15 -0.59 -13.10 16 6 C 0.10 1.86 6.55 -3.06 -0.02 1.84 16 7 C -0.12 -2.38 6.07 -24.90 -0.15 -2.53 16 8 C 0.24 5.70 0.78 -130.49 -0.10 5.60 16 9 N -0.83 -19.44 9.09 1.64 0.01 -19.42 16 10 C -0.50 -12.82 8.22 -34.44 -0.28 -13.10 16 11 H 0.07 1.70 7.76 -52.48 -0.41 1.30 16 12 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 13 N -0.89 -23.88 10.57 55.43 0.59 -23.29 16 14 Si 0.90 20.43 29.54 -169.99 -5.02 15.40 16 15 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 C 0.10 2.40 5.57 -2.40 -0.01 2.39 16 19 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 20 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 21 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 23 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 24 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 25 H 0.07 1.33 8.01 -51.93 -0.42 0.91 16 26 H 0.36 9.25 6.71 -39.29 -0.26 8.99 16 27 H 0.30 6.41 8.66 -39.29 -0.34 6.07 16 28 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 29 H 0.06 1.45 8.04 -51.93 -0.42 1.04 16 30 H 0.08 2.15 7.64 -51.93 -0.40 1.75 16 LS Contribution 256.03 15.07 3.86 3.86 Total: -1.00 -28.89 256.03 -4.92 -33.81 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -3.91 Total: 11.99 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: 0.87 Total: 11.95 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: 0.02 Total: -55.82 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -0.73 Total: -21.20 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -28.89 -4.92 -33.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260460249.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.495 kcal (2) G-P(sol) polarization free energy of solvation -28.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds