Wall clock time and date at job start Mon Mar 30 2020 02:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34638 * 117.00542 * 2 1 4 4 O 1.21511 * 119.99304 * 359.97438 * 3 2 1 5 5 N 1.34771 * 120.00361 * 179.97438 * 3 2 1 6 6 C 1.47019 * 125.64805 * 0.02562 * 5 3 2 7 7 C 1.54326 * 107.27342 * 181.02236 * 6 5 3 8 8 C 1.55156 * 102.94134 * 22.19214 * 7 6 5 9 9 N 1.46899 * 111.00827 * 82.56979 * 8 7 6 10 10 C 1.50695 * 111.00682 * 206.38919 * 8 7 6 11 11 H 1.08007 * 120.00269 * 359.97438 * 10 8 7 12 12 C 1.37878 * 120.00496 * 179.97438 * 10 8 7 13 13 N 1.31522 * 119.99669 * 359.97438 * 12 10 8 14 14 Si 1.86796 * 120.00341 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47262 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.47099 * 120.00520 * 14 12 10 17 17 H 1.48504 * 109.47079 * 240.00099 * 14 12 10 18 18 C 1.47429 * 125.64940 * 179.71181 * 5 3 2 19 19 H 1.09002 * 109.47379 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46782 * 60.00152 * 1 2 3 21 21 H 1.09004 * 109.47085 * 300.00272 * 1 2 3 22 22 H 1.09002 * 109.88643 * 300.43900 * 6 5 3 23 23 H 1.09006 * 109.88551 * 61.45200 * 6 5 3 24 24 H 1.09001 * 110.72570 * 140.55321 * 7 6 5 25 25 H 1.09003 * 110.72100 * 263.83259 * 7 6 5 26 26 H 1.00899 * 111.00318 * 179.97438 * 9 8 7 27 27 H 1.00896 * 110.99969 * 303.96274 * 9 8 7 28 28 H 0.96996 * 119.99674 * 179.97438 * 13 12 10 29 29 H 1.08996 * 110.36651 * 274.75134 * 18 5 3 30 30 H 1.09000 * 110.36266 * 37.07144 * 18 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2186 -0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.3274 0.1218 0.0006 7 6 5.7643 0.6841 0.0276 8 6 5.5693 2.1080 0.6122 9 7 5.4978 2.0698 2.0790 10 6 6.6640 3.0356 0.1517 11 1 7.4434 2.6696 -0.5004 12 6 6.6708 4.3517 0.5626 13 7 5.7215 4.7977 1.3563 14 14 8.0281 5.5013 -0.0077 15 1 8.9670 4.7605 -0.8880 16 1 7.4332 6.6343 -0.7612 17 1 8.7630 6.0235 1.1725 18 6 4.2046 2.5114 -0.0054 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 0.5139 0.8900 22 1 4.1530 -0.4923 0.8841 23 1 4.1766 -0.4735 -0.9001 24 1 6.4011 0.0842 0.6777 25 1 6.1778 0.7342 -0.9797 26 1 5.3715 2.9958 2.4591 27 1 4.7661 1.4482 2.3892 28 1 5.7265 5.7234 1.6457 29 1 4.3387 2.8711 -1.0256 30 1 3.7223 3.2738 0.6063 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260460249.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:47 Heat of formation + Delta-G solvation = -97.829599 kcal Electronic energy + Delta-G solvation = -14950.917201 eV Core-core repulsion = 12359.384398 eV Total energy + Delta-G solvation = -2591.532803 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.56719 -39.53345 -37.28683 -35.39471 -33.16069 -30.80909 -29.23002 -28.44201 -26.71235 -24.19029 -21.53137 -21.04689 -19.15439 -18.30397 -17.93040 -17.63473 -16.73207 -16.04676 -15.61327 -15.21403 -14.98219 -14.34663 -14.05428 -13.92594 -13.68542 -13.24443 -12.88715 -12.83323 -12.51640 -12.30667 -11.92227 -11.80604 -11.70603 -11.44919 -11.09442 -10.67585 -9.86194 -8.98792 -8.16320 -6.27366 1.15568 1.45380 1.48791 1.58612 1.68604 2.44314 3.09595 3.12494 3.92740 4.22130 4.27369 4.34280 4.36708 4.41349 4.62361 4.69600 4.75473 4.97432 5.04555 5.19071 5.28546 5.30836 5.47112 5.78177 6.16573 6.48658 6.65519 7.01127 7.17363 7.24886 7.45688 8.91188 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.051038 B = 0.008650 C = 0.008042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.481126 B = 3236.125386 C = 3480.791942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.369 6.369 3 C 0.650 3.350 4 O -0.619 6.619 5 N -0.601 5.601 6 C 0.108 3.892 7 C -0.114 4.114 8 C 0.232 3.768 9 N -0.831 5.831 10 C -0.515 4.515 11 H 0.068 0.932 12 C 0.026 3.974 13 N -0.916 5.916 14 Si 0.961 3.039 15 H -0.264 1.264 16 H -0.287 1.287 17 H -0.283 1.283 18 C 0.116 3.884 19 H 0.144 0.856 20 H 0.058 0.942 21 H 0.056 0.944 22 H 0.078 0.922 23 H 0.083 0.917 24 H 0.090 0.910 25 H 0.077 0.923 26 H 0.351 0.649 27 H 0.306 0.694 28 H 0.264 0.736 29 H 0.042 0.958 30 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.688 -9.963 -2.430 11.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.283 6.283 3 C 0.405 3.595 4 O -0.512 6.512 5 N -0.341 5.341 6 C -0.014 4.014 7 C -0.153 4.153 8 C 0.139 3.861 9 N -0.362 5.362 10 C -0.554 4.554 11 H 0.086 0.914 12 C -0.174 4.174 13 N -0.556 5.556 14 Si 0.787 3.213 15 H -0.188 1.188 16 H -0.213 1.213 17 H -0.209 1.209 18 C -0.008 4.008 19 H 0.162 0.838 20 H 0.077 0.923 21 H 0.075 0.925 22 H 0.097 0.903 23 H 0.102 0.898 24 H 0.108 0.892 25 H 0.096 0.904 26 H 0.168 0.832 27 H 0.115 0.885 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.335 -9.837 -2.363 11.006 hybrid contribution -0.785 1.573 -0.284 1.781 sum -5.120 -8.264 -2.647 10.075 Atomic orbital electron populations 1.23513 0.72975 1.05751 1.02303 1.86257 1.25668 1.29375 1.86953 1.17913 0.82596 0.82337 0.76633 1.90931 1.64947 1.36602 1.58735 1.47658 1.01362 1.11254 1.73800 1.22216 0.89110 0.87338 1.02728 1.22707 0.94242 0.96474 1.01835 1.19566 0.88901 0.92217 0.85427 1.59249 1.50875 1.16626 1.09411 1.21243 1.10178 0.94392 1.29576 0.91380 1.25745 0.97570 0.99680 0.94451 1.69735 1.34014 1.16588 1.35234 0.85459 0.79381 0.78486 0.77958 1.18793 1.21333 1.20911 1.23339 0.93629 0.83955 0.99838 0.83829 0.92327 0.92510 0.90336 0.89849 0.89151 0.90420 0.83167 0.88451 0.92618 0.93981 0.94005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.12 10.56 113.37 1.20 2.31 16 2 O -0.37 -11.92 10.17 -55.48 -0.56 -12.49 16 3 C 0.65 26.84 8.62 129.79 1.12 27.96 16 4 O -0.62 -29.88 16.39 19.81 0.32 -29.56 16 5 N -0.60 -24.57 3.32 -941.64 -3.13 -27.70 16 6 C 0.11 3.53 6.55 86.73 0.57 4.10 16 7 C -0.11 -4.16 6.07 31.78 0.19 -3.97 16 8 C 0.23 10.72 0.78 4.25 0.00 10.73 16 9 N -0.83 -38.55 9.09 -148.72 -1.35 -39.90 16 10 C -0.52 -26.31 8.22 25.60 0.21 -26.10 16 11 H 0.07 3.38 7.76 -2.91 -0.02 3.36 16 12 C 0.03 1.34 5.29 84.65 0.45 1.79 16 13 N -0.92 -49.88 10.57 21.45 0.23 -49.65 16 14 Si 0.96 41.97 29.54 68.60 2.03 43.99 16 15 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 16 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 17 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 18 C 0.12 5.57 5.57 86.93 0.48 6.05 16 19 H 0.14 1.96 8.14 -2.39 -0.02 1.94 16 20 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 21 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 22 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 23 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 24 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 25 H 0.08 2.71 8.01 -2.39 -0.02 2.70 16 26 H 0.35 18.07 6.71 -89.69 -0.60 17.47 16 27 H 0.31 12.99 8.66 -89.70 -0.78 12.21 16 28 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 29 H 0.04 2.11 8.04 -2.39 -0.02 2.10 16 30 H 0.04 2.31 7.64 -2.39 -0.02 2.29 16 Total: -1.00 -62.24 256.03 1.53 -60.71 By element: Atomic # 1 Polarization: 31.94 SS G_CDS: -0.22 Total: 31.72 kcal Atomic # 6 Polarization: 18.65 SS G_CDS: 4.22 Total: 22.87 kcal Atomic # 7 Polarization: -112.99 SS G_CDS: -4.26 Total: -117.25 kcal Atomic # 8 Polarization: -41.81 SS G_CDS: -0.24 Total: -42.05 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 43.99 kcal Total: -62.24 1.53 -60.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260460249.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.118 kcal (2) G-P(sol) polarization free energy of solvation -62.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds