Wall clock time and date at job start Mon Mar 30 2020 02:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47107 * 2 1 4 4 H 1.09000 * 109.47273 * 183.24356 * 3 2 1 5 5 C 1.52998 * 109.47428 * 63.24217 * 3 2 1 6 6 C 1.50694 * 109.47017 * 64.99447 * 5 3 2 7 7 H 1.08000 * 120.00549 * 0.02562 * 6 5 3 8 8 C 1.37884 * 120.00018 * 180.27397 * 6 5 3 9 9 N 1.31517 * 119.99913 * 359.73467 * 8 6 5 10 10 Si 1.86797 * 120.00111 * 179.72671 * 8 6 5 11 11 H 1.48497 * 109.47076 * 60.00433 * 10 8 6 12 12 H 1.48497 * 109.47039 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.47521 * 300.00627 * 10 8 6 14 14 C 1.53003 * 109.47137 * 303.23879 * 3 2 1 15 15 H 1.08999 * 108.85098 * 64.88147 * 14 3 2 16 16 C 1.52937 * 108.88755 * 306.43723 * 14 3 2 17 17 C 1.55160 * 108.96221 * 209.10415 * 16 14 3 18 18 S 1.83991 * 100.90534 * 41.43787 * 17 16 14 19 19 C 1.53704 * 108.88835 * 183.45644 * 14 3 2 20 20 H 1.09005 * 109.47061 * 178.84391 * 1 2 3 21 21 H 1.08996 * 109.46680 * 298.84526 * 1 2 3 22 22 H 1.09001 * 109.47011 * 58.84815 * 1 2 3 23 23 H 1.09001 * 109.46819 * 239.99823 * 2 1 3 24 24 H 1.09000 * 109.47135 * 120.00334 * 2 1 3 25 25 H 1.09002 * 109.46932 * 304.99885 * 5 3 2 26 26 H 1.08991 * 109.47176 * 185.00250 * 5 3 2 27 27 H 0.96993 * 119.99804 * 179.97438 * 9 8 6 28 28 H 1.09000 * 109.60595 * 329.03481 * 16 14 3 29 29 H 1.09004 * 109.60363 * 89.17836 * 16 14 3 30 30 H 1.09003 * 111.12578 * 283.53453 * 17 16 14 31 31 H 1.08997 * 111.16969 * 159.36752 * 17 16 14 32 32 H 1.09002 * 110.34443 * 242.49403 * 19 14 3 33 33 H 1.09004 * 110.34232 * 4.74683 * 19 14 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1285 1.4430 -0.0581 5 6 1.5978 2.1398 1.2880 6 6 2.2628 1.4817 2.4693 7 1 2.9341 0.6496 2.3168 8 6 2.0103 1.9387 3.7455 9 7 1.1930 2.9522 3.9313 10 14 2.8287 1.1181 5.2104 11 1 4.3038 1.2241 5.0769 12 1 2.3948 1.7911 6.4610 13 1 2.4377 -0.3138 5.2581 14 6 1.4645 2.1869 -1.2065 15 1 0.3825 2.2560 -1.0944 16 6 1.7782 1.3916 -2.4746 17 6 1.8956 2.3740 -3.6698 18 16 2.8337 3.7542 -2.8950 19 6 2.0528 3.6064 -1.2422 20 1 -0.3633 -1.0275 -0.0207 21 1 -0.3632 0.4958 0.9001 22 1 -0.3633 0.5316 -0.8795 23 1 1.8933 -0.5139 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 0.5154 2.0615 1.3903 26 1 1.8839 3.1908 1.2488 27 1 1.0151 3.2734 4.8291 28 1 2.7192 0.8564 -2.3474 29 1 0.9773 0.6773 -2.6658 30 1 0.9125 2.7059 -4.0036 31 1 2.4575 1.9293 -4.4911 32 1 1.2614 4.3475 -1.1295 33 1 2.8002 3.7267 -0.4579 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260489197.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:33 Heat of formation + Delta-G solvation = -33.747854 kcal Electronic energy + Delta-G solvation = -12930.372212 eV Core-core repulsion = 10887.911416 eV Total energy + Delta-G solvation = -2042.460796 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.11843 -33.62248 -32.16954 -29.97793 -27.98199 -25.63225 -23.79332 -22.68703 -20.54124 -18.18873 -16.57008 -16.02545 -15.27422 -14.62167 -14.27525 -14.03165 -13.20124 -12.79099 -12.53784 -12.35008 -11.69363 -11.64543 -11.41485 -11.34594 -11.12658 -10.82099 -10.65563 -10.56572 -10.08170 -9.86807 -9.73630 -9.51080 -9.02777 -8.93217 -8.32991 -7.46350 -5.99664 -4.00682 2.15154 2.63496 3.32710 3.37630 3.39850 4.45664 4.85288 4.96582 5.23712 5.36206 5.38314 5.47716 5.65865 5.77234 5.84198 5.92985 5.95236 6.07856 6.18409 6.33280 6.45252 6.47563 6.64968 6.82183 6.93863 7.07462 7.20200 7.68745 7.81753 8.00768 8.43527 9.05163 9.62700 11.11477 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.040673 B = 0.008190 C = 0.007412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.256155 B = 3417.824752 C = 3776.715468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.109 4.109 3 C -0.074 4.074 4 H 0.060 0.940 5 C 0.025 3.975 6 C -0.514 4.514 7 H 0.054 0.946 8 C 0.057 3.943 9 N -0.896 5.896 10 Si 0.888 3.112 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.278 1.278 14 C -0.093 4.093 15 H 0.076 0.924 16 C -0.117 4.117 17 C -0.066 4.066 18 S -0.330 6.330 19 C -0.049 4.049 20 H 0.037 0.963 21 H 0.068 0.932 22 H 0.043 0.957 23 H 0.039 0.961 24 H 0.070 0.930 25 H 0.021 0.979 26 H 0.016 0.984 27 H 0.260 0.740 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.725 -2.866 -11.564 11.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.146 4.146 3 C -0.093 4.093 4 H 0.078 0.922 5 C -0.012 4.012 6 C -0.553 4.553 7 H 0.073 0.927 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.716 3.284 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.113 4.113 15 H 0.095 0.905 16 C -0.156 4.156 17 C -0.214 4.214 18 S -0.104 6.104 19 C -0.196 4.196 20 H 0.057 0.943 21 H 0.086 0.914 22 H 0.062 0.938 23 H 0.058 0.942 24 H 0.089 0.911 25 H 0.039 0.961 26 H 0.035 0.965 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.116 0.884 32 H 0.103 0.897 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.042 -1.986 -11.859 12.024 hybrid contribution -0.463 -1.077 1.383 1.813 sum -0.421 -3.063 -10.475 10.922 Atomic orbital electron populations 1.21843 0.96887 1.00007 1.02017 1.21460 0.95506 0.97036 1.00640 1.21367 0.98957 0.94309 0.94666 0.92200 1.19247 0.96894 0.95272 0.89800 1.21192 1.26756 1.16094 0.91230 0.92747 1.24996 0.95333 0.95108 0.98945 1.69944 1.36057 1.25686 1.21838 0.86728 0.79904 0.79612 0.82188 1.20314 1.21374 1.20335 1.21764 1.01229 0.92392 0.95885 0.90518 1.22508 1.03117 0.97973 0.91990 1.24312 1.01468 0.95417 1.00231 1.87651 1.58594 1.48905 1.15241 1.24144 1.02367 0.99555 0.93555 0.94344 0.91352 0.93766 0.94188 0.91116 0.96065 0.96550 0.93036 0.90470 0.90553 0.89745 0.88374 0.89735 0.87400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.19 37.16 0.34 -2.16 16 2 C -0.11 -1.92 5.13 -26.73 -0.14 -2.06 16 3 C -0.07 -1.41 1.31 -90.62 -0.12 -1.53 16 4 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 5 C 0.02 0.60 4.13 -27.89 -0.12 0.48 16 6 C -0.51 -13.91 8.36 -34.44 -0.29 -14.20 16 7 H 0.05 1.44 7.07 -52.49 -0.37 1.07 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -26.34 13.29 55.43 0.74 -25.61 16 10 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 C -0.09 -1.49 1.77 -90.28 -0.16 -1.65 16 15 H 0.08 1.25 6.59 -51.93 -0.34 0.90 16 16 C -0.12 -1.56 4.40 -25.62 -0.11 -1.67 16 17 C -0.07 -0.82 7.52 38.30 0.29 -0.53 16 18 S -0.33 -5.15 23.23 -107.50 -2.50 -7.65 16 19 C -0.05 -0.81 6.25 37.52 0.23 -0.57 16 20 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 21 H 0.07 1.32 6.46 -51.93 -0.34 0.98 16 22 H 0.04 0.65 5.81 -51.93 -0.30 0.35 16 23 H 0.04 0.61 6.87 -51.93 -0.36 0.25 16 24 H 0.07 1.39 6.86 -51.93 -0.36 1.04 16 25 H 0.02 0.54 6.30 -51.93 -0.33 0.22 16 26 H 0.02 0.42 6.61 -51.93 -0.34 0.08 16 27 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.08 1.06 7.45 -51.93 -0.39 0.68 16 29 H 0.08 0.91 7.56 -51.93 -0.39 0.52 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.11 2.00 6.73 -51.93 -0.35 1.65 16 LS Contribution 264.24 15.07 3.98 3.98 Total: -1.00 -28.40 264.24 -8.08 -36.48 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -5.11 Total: -1.23 kcal Atomic # 6 Polarization: -22.22 SS G_CDS: -0.16 Total: -22.38 kcal Atomic # 7 Polarization: -26.34 SS G_CDS: 0.74 Total: -25.61 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -5.15 SS G_CDS: -2.50 Total: -7.65 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -28.40 -8.08 -36.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260489197.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.727 kcal (2) G-P(sol) polarization free energy of solvation -28.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds