Wall clock time and date at job start Mon Mar 30 2020 02:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47107 * 2 1 4 4 H 1.09000 * 109.47273 * 183.24356 * 3 2 1 5 5 C 1.52998 * 109.47428 * 63.24217 * 3 2 1 6 6 C 1.50694 * 109.47017 * 64.99447 * 5 3 2 7 7 H 1.08000 * 120.00549 * 0.02562 * 6 5 3 8 8 C 1.37884 * 120.00018 * 180.27397 * 6 5 3 9 9 N 1.31517 * 119.99913 * 359.73467 * 8 6 5 10 10 Si 1.86797 * 120.00111 * 179.72671 * 8 6 5 11 11 H 1.48497 * 109.47076 * 60.00433 * 10 8 6 12 12 H 1.48497 * 109.47039 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.47521 * 300.00627 * 10 8 6 14 14 C 1.53003 * 109.47137 * 303.23879 * 3 2 1 15 15 H 1.08999 * 108.85098 * 64.88147 * 14 3 2 16 16 C 1.52937 * 108.88755 * 306.43723 * 14 3 2 17 17 C 1.55160 * 108.96221 * 209.10415 * 16 14 3 18 18 S 1.83991 * 100.90534 * 41.43787 * 17 16 14 19 19 C 1.53704 * 108.88835 * 183.45644 * 14 3 2 20 20 H 1.09005 * 109.47061 * 178.84391 * 1 2 3 21 21 H 1.08996 * 109.46680 * 298.84526 * 1 2 3 22 22 H 1.09001 * 109.47011 * 58.84815 * 1 2 3 23 23 H 1.09001 * 109.46819 * 239.99823 * 2 1 3 24 24 H 1.09000 * 109.47135 * 120.00334 * 2 1 3 25 25 H 1.09002 * 109.46932 * 304.99885 * 5 3 2 26 26 H 1.08991 * 109.47176 * 185.00250 * 5 3 2 27 27 H 0.96993 * 119.99804 * 179.97438 * 9 8 6 28 28 H 1.09000 * 109.60595 * 329.03481 * 16 14 3 29 29 H 1.09004 * 109.60363 * 89.17836 * 16 14 3 30 30 H 1.09003 * 111.12578 * 283.53453 * 17 16 14 31 31 H 1.08997 * 111.16969 * 159.36752 * 17 16 14 32 32 H 1.09002 * 110.34443 * 242.49403 * 19 14 3 33 33 H 1.09004 * 110.34232 * 4.74683 * 19 14 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1285 1.4430 -0.0581 5 6 1.5978 2.1398 1.2880 6 6 2.2628 1.4817 2.4693 7 1 2.9341 0.6496 2.3168 8 6 2.0103 1.9387 3.7455 9 7 1.1930 2.9522 3.9313 10 14 2.8287 1.1181 5.2104 11 1 4.3038 1.2241 5.0769 12 1 2.3948 1.7911 6.4610 13 1 2.4377 -0.3138 5.2581 14 6 1.4645 2.1869 -1.2065 15 1 0.3825 2.2560 -1.0944 16 6 1.7782 1.3916 -2.4746 17 6 1.8956 2.3740 -3.6698 18 16 2.8337 3.7542 -2.8950 19 6 2.0528 3.6064 -1.2422 20 1 -0.3633 -1.0275 -0.0207 21 1 -0.3632 0.4958 0.9001 22 1 -0.3633 0.5316 -0.8795 23 1 1.8933 -0.5139 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 0.5154 2.0615 1.3903 26 1 1.8839 3.1908 1.2488 27 1 1.0151 3.2734 4.8291 28 1 2.7192 0.8564 -2.3474 29 1 0.9773 0.6773 -2.6658 30 1 0.9125 2.7059 -4.0036 31 1 2.4575 1.9293 -4.4911 32 1 1.2614 4.3475 -1.1295 33 1 2.8002 3.7267 -0.4579 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260489197.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:33 Heat of formation + Delta-G solvation = -48.633955 kcal Electronic energy + Delta-G solvation = -12931.017722 eV Core-core repulsion = 10887.911416 eV Total energy + Delta-G solvation = -2043.106305 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.55099 -35.30486 -33.90740 -31.35911 -29.66304 -27.16620 -25.33598 -24.28774 -21.93125 -19.66358 -18.42789 -17.49858 -16.69709 -16.41126 -15.70788 -15.40263 -14.58397 -14.41959 -13.96650 -13.79525 -13.22421 -13.13599 -13.03019 -12.81719 -12.64149 -12.43052 -12.36110 -12.01286 -11.69863 -11.42254 -11.28780 -10.91555 -10.79638 -10.60351 -10.47320 -8.70261 -8.15458 -6.22882 0.97986 1.39212 1.40764 1.45429 1.48312 2.42229 3.18255 3.69090 3.74758 4.03593 4.18800 4.33828 4.38899 4.44509 4.56818 4.63316 4.77000 4.81808 4.88059 5.03029 5.08114 5.16202 5.23910 5.31747 5.40120 5.54479 5.60537 5.71199 5.86974 5.97293 6.33801 6.93529 7.44440 8.95736 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.040673 B = 0.008190 C = 0.007412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.256155 B = 3417.824752 C = 3776.715468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.106 4.106 3 C -0.064 4.064 4 H 0.046 0.954 5 C 0.032 3.968 6 C -0.526 4.526 7 H 0.056 0.944 8 C 0.000 4.000 9 N -0.933 5.933 10 Si 0.952 3.048 11 H -0.271 1.271 12 H -0.286 1.286 13 H -0.268 1.268 14 C -0.086 4.086 15 H 0.077 0.923 16 C -0.112 4.112 17 C -0.049 4.049 18 S -0.360 6.360 19 C -0.048 4.048 20 H 0.059 0.941 21 H 0.031 0.969 22 H 0.066 0.934 23 H 0.075 0.925 24 H 0.044 0.956 25 H 0.001 0.999 26 H -0.012 1.012 27 H 0.260 0.740 28 H 0.076 0.924 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.124 0.876 32 H 0.082 0.918 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.749 -4.581 -13.264 14.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.143 4.143 3 C -0.083 4.083 4 H 0.065 0.935 5 C -0.005 4.005 6 C -0.565 4.565 7 H 0.075 0.925 8 C -0.197 4.197 9 N -0.574 5.574 10 Si 0.778 3.222 11 H -0.196 1.196 12 H -0.212 1.212 13 H -0.193 1.193 14 C -0.105 4.105 15 H 0.095 0.905 16 C -0.151 4.151 17 C -0.196 4.196 18 S -0.135 6.135 19 C -0.196 4.196 20 H 0.078 0.922 21 H 0.050 0.950 22 H 0.084 0.916 23 H 0.093 0.907 24 H 0.063 0.937 25 H 0.019 0.981 26 H 0.007 0.993 27 H 0.069 0.931 28 H 0.095 0.905 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.142 0.858 32 H 0.101 0.899 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.025 -3.713 -13.570 14.069 hybrid contribution -0.457 -0.525 1.875 2.000 sum -0.432 -4.238 -11.695 12.446 Atomic orbital electron populations 1.21781 0.95962 1.01267 1.01209 1.21424 0.96263 0.95544 1.01063 1.21165 0.98212 0.95460 0.93511 0.93520 1.19114 0.95326 0.94080 0.92006 1.21631 1.26451 1.15957 0.92412 0.92547 1.25853 0.96046 0.95765 1.02024 1.70078 1.37676 1.27260 1.22376 0.85694 0.79028 0.78919 0.78593 1.19623 1.21164 1.19277 1.21703 1.00801 0.91856 0.96177 0.90462 1.22450 1.04051 0.98032 0.90546 1.24464 1.02103 0.92996 1.00058 1.87761 1.59660 1.51382 1.14698 1.23991 1.01571 1.00277 0.93781 0.92161 0.95032 0.91555 0.90662 0.93704 0.98065 0.99327 0.93111 0.90527 0.87868 0.87882 0.85771 0.89936 0.90299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.55 9.19 71.98 0.66 -3.89 16 2 C -0.11 -3.55 5.13 30.59 0.16 -3.39 16 3 C -0.06 -2.45 1.31 -10.80 -0.01 -2.46 16 4 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 5 C 0.03 1.59 4.13 29.85 0.12 1.71 16 6 C -0.53 -29.18 8.36 25.60 0.21 -28.96 16 7 H 0.06 3.03 7.07 -2.91 -0.02 3.01 16 8 C 0.00 0.02 5.46 84.66 0.46 0.49 16 9 N -0.93 -56.52 13.29 21.45 0.28 -56.24 16 10 Si 0.95 44.45 29.54 68.60 2.03 46.48 16 11 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 12 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 13 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 14 C -0.09 -2.65 1.77 -10.58 -0.02 -2.66 16 15 H 0.08 2.39 6.59 -2.39 -0.02 2.38 16 16 C -0.11 -2.57 4.40 31.31 0.14 -2.43 16 17 C -0.05 -1.01 7.52 72.72 0.55 -0.47 16 18 S -0.36 -10.80 23.23 -56.49 -1.31 -12.11 16 19 C -0.05 -1.63 6.25 72.22 0.45 -1.18 16 20 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 21 H 0.03 1.21 6.46 -2.39 -0.02 1.19 16 22 H 0.07 1.77 5.81 -2.39 -0.01 1.75 16 23 H 0.07 2.02 6.87 -2.39 -0.02 2.01 16 24 H 0.04 1.73 6.86 -2.39 -0.02 1.71 16 25 H 0.00 0.06 6.30 -2.39 -0.02 0.04 16 26 H -0.01 -0.64 6.61 -2.39 -0.02 -0.65 16 27 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 28 H 0.08 1.82 7.45 -2.39 -0.02 1.80 16 29 H 0.10 1.90 7.56 -2.38 -0.02 1.88 16 30 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 33 H 0.08 3.09 6.73 -2.39 -0.02 3.08 16 Total: -1.00 -62.80 264.24 4.79 -58.01 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: 1.07 Total: 7.11 kcal Atomic # 6 Polarization: -45.97 SS G_CDS: 2.72 Total: -43.25 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: 0.28 Total: -56.24 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 16 Polarization: -10.80 SS G_CDS: -1.31 Total: -12.11 kcal Total: -62.80 4.79 -58.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260489197.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.378 kcal (2) G-P(sol) polarization free energy of solvation -62.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds