Wall clock time and date at job start Mon Mar 30 2020 02:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46574 * 2 1 4 4 H 1.09008 * 109.46470 * 179.05199 * 3 2 1 5 5 C 1.52998 * 109.47416 * 299.05330 * 3 2 1 6 6 C 1.50707 * 109.46742 * 294.64405 * 5 3 2 7 7 H 1.08000 * 120.00390 * 355.10604 * 6 5 3 8 8 C 1.37884 * 119.99473 * 175.11092 * 6 5 3 9 9 N 1.31510 * 120.00339 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99633 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47032 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47207 * 119.99529 * 10 8 6 13 13 H 1.48502 * 109.46747 * 239.99647 * 10 8 6 14 14 C 1.52998 * 109.47093 * 59.05629 * 3 2 1 15 15 H 1.09002 * 109.96140 * 299.78990 * 14 3 2 16 16 C 1.54016 * 110.01327 * 60.95061 * 14 3 2 17 17 C 1.54271 * 108.84360 * 166.53577 * 16 14 3 18 18 S 1.83100 * 104.75164 * 332.19733 * 17 16 14 19 19 C 1.55133 * 109.97374 * 178.54220 * 14 3 2 20 20 H 1.09000 * 109.47031 * 302.01914 * 1 2 3 21 21 H 1.09003 * 109.47501 * 62.02398 * 1 2 3 22 22 H 1.09004 * 109.46949 * 182.02145 * 1 2 3 23 23 H 1.08999 * 109.47264 * 240.00689 * 2 1 3 24 24 H 1.08994 * 109.47474 * 120.00125 * 2 1 3 25 25 H 1.08994 * 109.47392 * 54.64327 * 5 3 2 26 26 H 1.08999 * 109.47137 * 174.64925 * 5 3 2 27 27 H 0.97000 * 120.00188 * 180.02562 * 9 8 6 28 28 H 1.09002 * 109.57657 * 46.68480 * 16 14 3 29 29 H 1.09003 * 109.72918 * 286.47526 * 16 14 3 30 30 H 1.09000 * 110.40332 * 213.34959 * 17 16 14 31 31 H 1.08996 * 110.40356 * 91.04862 * 17 16 14 32 32 H 1.09004 * 110.85675 * 80.30434 * 19 14 3 33 33 H 1.08995 * 111.03747 * 316.74231 * 19 14 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1298 1.4426 0.0170 5 6 1.5494 2.1569 -1.2609 6 6 2.1763 1.5205 -2.4747 7 1 2.9160 0.7427 -2.3554 8 6 1.8053 1.9314 -3.7376 9 7 0.9042 2.8782 -3.8829 10 14 2.5818 1.1420 -5.2421 11 1 3.5588 0.1101 -4.8111 12 1 1.5243 0.5081 -6.0698 13 1 3.2798 2.1809 -6.0414 14 6 1.5105 2.1706 1.2372 15 1 0.4206 2.1784 1.2264 16 6 2.0168 1.4753 2.5148 17 6 1.7626 2.4029 3.7210 18 16 1.7970 4.0953 3.0230 19 6 2.0506 3.6245 1.2681 20 1 -0.3633 0.5449 0.8713 21 1 -0.3634 0.4821 -0.9076 22 1 -0.3633 -1.0271 0.0363 23 1 1.8934 -0.5137 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 0.4646 2.0742 -1.3267 26 1 1.8316 3.2088 -1.2157 27 1 0.6430 3.1669 -4.7713 28 1 3.0849 1.2775 2.4241 29 1 1.4842 0.5351 2.6578 30 1 2.5499 2.2829 4.4652 31 1 0.7883 2.1937 4.1626 32 1 1.4711 4.2680 0.6060 33 1 3.1085 3.6546 1.0072 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260489208.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:34 Heat of formation + Delta-G solvation = -50.822903 kcal Electronic energy + Delta-G solvation = -12900.787283 eV Core-core repulsion = 10857.586058 eV Total energy + Delta-G solvation = -2043.201225 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.39712 -35.36639 -33.99159 -31.23836 -29.68224 -27.17175 -25.23957 -24.21103 -22.10093 -19.75142 -18.43906 -17.35661 -16.68756 -16.39103 -15.64096 -15.48458 -14.69258 -14.38456 -14.08146 -13.59229 -13.31443 -13.11633 -13.07517 -12.84509 -12.62561 -12.47851 -12.27427 -11.91745 -11.88743 -11.44250 -11.26788 -11.04580 -10.76327 -10.55901 -10.47258 -8.70309 -8.14593 -6.21974 0.93143 1.38772 1.40439 1.48282 1.51744 2.42885 3.19487 3.69691 3.75993 3.97831 4.21545 4.28207 4.38773 4.43591 4.52238 4.67267 4.73103 4.83629 4.85777 5.03265 5.05802 5.11461 5.20851 5.31766 5.38354 5.55949 5.60990 5.70983 5.87008 5.97954 6.34091 6.95251 7.45537 8.96958 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.042939 B = 0.007960 C = 0.007255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.929270 B = 3516.823235 C = 3858.439644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.103 4.103 3 C -0.061 4.061 4 H 0.054 0.946 5 C 0.030 3.970 6 C -0.522 4.522 7 H 0.058 0.942 8 C 0.000 4.000 9 N -0.934 5.934 10 Si 0.952 3.048 11 H -0.262 1.262 12 H -0.282 1.282 13 H -0.283 1.283 14 C -0.082 4.082 15 H 0.077 0.923 16 C -0.118 4.118 17 C -0.054 4.054 18 S -0.358 6.358 19 C -0.049 4.049 20 H 0.061 0.939 21 H 0.030 0.970 22 H 0.060 0.940 23 H 0.047 0.953 24 H 0.076 0.924 25 H 0.002 0.998 26 H -0.013 1.013 27 H 0.259 0.741 28 H 0.078 0.922 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.103 0.897 32 H 0.081 0.919 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.564 -4.918 12.851 13.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.141 4.141 3 C -0.081 4.081 4 H 0.073 0.927 5 C -0.007 4.007 6 C -0.561 4.561 7 H 0.076 0.924 8 C -0.198 4.198 9 N -0.575 5.575 10 Si 0.778 3.222 11 H -0.186 1.186 12 H -0.208 1.208 13 H -0.209 1.209 14 C -0.102 4.102 15 H 0.095 0.905 16 C -0.156 4.156 17 C -0.202 4.202 18 S -0.132 6.132 19 C -0.197 4.197 20 H 0.079 0.921 21 H 0.049 0.951 22 H 0.079 0.921 23 H 0.065 0.935 24 H 0.095 0.905 25 H 0.021 0.979 26 H 0.005 0.995 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.121 0.879 30 H 0.130 0.870 31 H 0.122 0.878 32 H 0.099 0.901 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.376 -3.744 13.285 13.871 hybrid contribution 0.274 -0.818 -1.918 2.103 sum 1.650 -4.563 11.367 12.359 Atomic orbital electron populations 1.21775 0.96368 1.01152 1.01017 1.21395 0.95944 0.95542 1.01181 1.21052 0.98716 0.95348 0.93005 0.92722 1.19119 0.95517 0.93934 0.92113 1.21675 1.22485 1.19871 0.92022 0.92396 1.25854 0.95820 0.95796 1.02285 1.70096 1.33237 1.30893 1.23247 0.85585 0.78499 0.78548 0.79566 1.18601 1.20755 1.20925 1.22298 1.00761 0.91524 0.95653 0.90508 1.22379 1.03105 0.99438 0.90674 1.24066 1.06660 0.89367 1.00094 1.87499 1.96696 1.18631 1.10341 1.24244 1.04059 0.99586 0.91770 0.92057 0.95077 0.92143 0.93455 0.90527 0.97938 0.99471 0.93172 0.90295 0.87852 0.87042 0.87803 0.90065 0.89695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.73 9.22 71.98 0.66 -4.06 16 2 C -0.10 -3.42 5.23 30.60 0.16 -3.26 16 3 C -0.06 -2.27 1.67 -10.79 -0.02 -2.29 16 4 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 5 C 0.03 1.50 4.13 29.85 0.12 1.62 16 6 C -0.52 -28.53 8.30 25.60 0.21 -28.32 16 7 H 0.06 3.06 7.27 -2.91 -0.02 3.04 16 8 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 9 N -0.93 -56.35 13.29 21.45 0.28 -56.06 16 10 Si 0.95 44.07 29.54 68.60 2.03 46.10 16 11 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 14 C -0.08 -2.55 1.76 -9.72 -0.02 -2.57 16 15 H 0.08 2.50 6.41 -2.39 -0.02 2.49 16 16 C -0.12 -2.67 5.00 31.37 0.16 -2.51 16 17 C -0.05 -1.15 7.33 72.41 0.53 -0.62 16 18 S -0.36 -10.65 23.26 -56.49 -1.31 -11.96 16 19 C -0.05 -1.63 5.78 72.71 0.42 -1.21 16 20 H 0.06 1.76 6.31 -2.39 -0.02 1.74 16 21 H 0.03 1.24 6.44 -2.39 -0.02 1.22 16 22 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 23 H 0.05 1.78 7.05 -2.39 -0.02 1.77 16 24 H 0.08 1.99 6.88 -2.39 -0.02 1.97 16 25 H 0.00 0.13 6.23 -2.39 -0.01 0.11 16 26 H -0.01 -0.70 6.77 -2.39 -0.02 -0.72 16 27 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 28 H 0.08 1.73 8.10 -2.39 -0.02 1.72 16 29 H 0.10 1.95 7.32 -2.39 -0.02 1.94 16 30 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.08 3.05 7.60 -2.39 -0.02 3.04 16 33 H 0.08 2.86 8.11 -2.39 -0.02 2.84 16 Total: -1.00 -61.93 266.66 4.76 -57.17 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 1.07 Total: 7.54 kcal Atomic # 6 Polarization: -45.47 SS G_CDS: 2.69 Total: -42.78 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: 0.28 Total: -56.06 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: -10.65 SS G_CDS: -1.31 Total: -11.96 kcal Total: -61.93 4.76 -57.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260489208.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.343 kcal (2) G-P(sol) polarization free energy of solvation -61.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds