Wall clock time and date at job start Mon Mar 30 2020 02:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47366 * 2 1 4 4 H 1.09000 * 109.46824 * 305.47165 * 3 2 1 5 5 C 1.53002 * 109.47150 * 65.47042 * 3 2 1 6 6 C 1.50702 * 109.46902 * 57.95551 * 5 3 2 7 7 H 1.08001 * 120.00097 * 5.43906 * 6 5 3 8 8 C 1.37876 * 119.99667 * 185.44303 * 6 5 3 9 9 N 1.31514 * 120.00515 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99957 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.47117 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.47159 * 119.99811 * 10 8 6 13 13 H 1.48495 * 109.47334 * 240.00095 * 10 8 6 14 14 C 1.52998 * 109.47374 * 185.47098 * 3 2 1 15 15 H 1.09000 * 108.85191 * 300.70075 * 14 3 2 16 16 C 1.52935 * 108.77490 * 182.18696 * 14 3 2 17 17 C 1.55154 * 108.96057 * 209.18243 * 16 14 3 18 18 S 1.83989 * 100.91042 * 41.44124 * 17 16 14 19 19 C 1.53708 * 108.88551 * 59.27745 * 14 3 2 20 20 H 1.08999 * 109.47395 * 54.46135 * 1 2 3 21 21 H 1.09002 * 109.47032 * 174.45846 * 1 2 3 22 22 H 1.09000 * 109.46992 * 294.45752 * 1 2 3 23 23 H 1.08999 * 109.46889 * 239.99866 * 2 1 3 24 24 H 1.09000 * 109.47332 * 120.00231 * 2 1 3 25 25 H 1.08993 * 109.47247 * 177.95685 * 5 3 2 26 26 H 1.09002 * 109.47036 * 297.95734 * 5 3 2 27 27 H 0.96996 * 120.00329 * 180.02562 * 9 8 6 28 28 H 1.08997 * 109.61061 * 329.11507 * 16 14 3 29 29 H 1.09001 * 109.60315 * 89.25287 * 16 14 3 30 30 H 1.09002 * 111.13029 * 283.52692 * 17 16 14 31 31 H 1.09002 * 111.13060 * 159.34913 * 17 16 14 32 32 H 1.09000 * 110.34108 * 242.34865 * 19 14 3 33 33 H 1.08998 * 110.34138 * 4.60416 * 19 14 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5989 1.9838 -0.8369 5 6 1.6454 2.1230 1.3123 6 6 2.2136 1.3458 2.4718 7 1 2.8697 0.5074 2.2902 8 6 1.8956 1.7051 3.7644 9 7 1.0970 2.7262 3.9856 10 14 2.5992 0.7413 5.2016 11 1 3.4635 -0.3520 4.6887 12 1 3.4050 1.6479 6.0584 13 1 1.4892 0.1623 6.0001 14 6 3.5638 1.4447 -0.1375 15 1 3.9936 0.8906 0.6970 16 6 4.0611 2.8898 -0.0808 17 6 5.3668 3.0066 -0.9107 18 16 4.9433 1.9740 -2.3734 19 6 3.9459 0.7425 -1.4504 20 1 -0.3634 0.5973 -0.8362 21 1 -0.3633 -1.0229 -0.0992 22 1 -0.3633 0.4255 0.9355 23 1 1.8933 -0.5139 -0.8900 24 1 1.8934 -0.5139 0.8900 25 1 2.0399 3.1389 1.3277 26 1 0.5589 2.1538 1.3932 27 1 0.8736 2.9792 4.8949 28 1 3.3032 3.5540 -0.4961 29 1 4.2596 3.1679 0.9543 30 1 6.2157 2.5903 -0.3683 31 1 5.5568 4.0399 -1.2009 32 1 4.5395 -0.1483 -1.2448 33 1 3.0507 0.4805 -2.0144 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260489216.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:36 Heat of formation + Delta-G solvation = -47.955785 kcal Electronic energy + Delta-G solvation = -13023.725918 eV Core-core repulsion = 10980.649021 eV Total energy + Delta-G solvation = -2043.076898 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.40876 -35.20446 -34.15727 -30.63887 -30.43264 -26.97715 -24.99391 -24.36935 -21.55007 -20.53257 -17.97630 -17.48470 -16.76174 -16.17030 -15.58607 -15.39805 -14.63240 -14.48775 -13.92716 -13.64116 -13.29433 -13.09897 -13.04752 -12.76112 -12.50031 -12.42929 -12.27755 -12.15762 -11.66628 -11.60106 -11.20251 -10.86358 -10.69747 -10.59438 -10.42261 -8.66231 -8.10821 -6.16227 1.01601 1.39236 1.42215 1.44364 1.51900 2.44834 3.23941 3.73038 3.80373 4.07427 4.22816 4.28360 4.39965 4.48335 4.58237 4.62030 4.80333 4.86459 4.93908 5.03970 5.09454 5.17367 5.27600 5.41797 5.45626 5.55145 5.63322 5.73585 5.85307 5.96959 6.38662 6.99660 7.50535 9.01221 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.031229 B = 0.009699 C = 0.008431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.382143 B = 2886.275027 C = 3320.368585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.109 4.109 3 C -0.064 4.064 4 H 0.051 0.949 5 C 0.030 3.970 6 C -0.501 4.501 7 H 0.064 0.936 8 C 0.000 4.000 9 N -0.936 5.936 10 Si 0.946 3.054 11 H -0.261 1.261 12 H -0.285 1.285 13 H -0.287 1.287 14 C -0.078 4.078 15 H 0.071 0.929 16 C -0.110 4.110 17 C -0.051 4.051 18 S -0.347 6.347 19 C -0.048 4.048 20 H 0.053 0.947 21 H 0.061 0.939 22 H 0.031 0.969 23 H 0.070 0.930 24 H 0.054 0.946 25 H -0.008 1.008 26 H -0.008 1.008 27 H 0.257 0.743 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.116 0.884 32 H 0.096 0.904 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.634 -3.475 -8.965 11.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.146 4.146 3 C -0.084 4.084 4 H 0.069 0.931 5 C -0.007 4.007 6 C -0.540 4.540 7 H 0.082 0.918 8 C -0.197 4.197 9 N -0.577 5.577 10 Si 0.772 3.228 11 H -0.185 1.185 12 H -0.212 1.212 13 H -0.213 1.213 14 C -0.097 4.097 15 H 0.090 0.910 16 C -0.149 4.149 17 C -0.199 4.199 18 S -0.122 6.122 19 C -0.195 4.195 20 H 0.072 0.928 21 H 0.080 0.920 22 H 0.050 0.950 23 H 0.089 0.911 24 H 0.073 0.927 25 H 0.011 0.989 26 H 0.011 0.989 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.116 0.884 31 H 0.134 0.866 32 H 0.114 0.886 33 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 5.855 -3.301 -10.020 12.066 hybrid contribution -0.333 -0.173 2.398 2.427 sum 5.522 -3.474 -7.622 10.033 Atomic orbital electron populations 1.21683 0.96478 1.01154 1.00706 1.21533 0.95734 0.96114 1.01249 1.21189 0.93364 0.96557 0.97245 0.93086 1.19081 0.94906 0.94475 0.92220 1.21556 1.27359 1.13893 0.91153 0.91800 1.25800 0.95948 0.96180 1.01792 1.70099 1.37840 1.28979 1.20822 0.85682 0.78219 0.79009 0.79871 1.18476 1.21153 1.21281 1.21495 0.96976 0.95291 0.95980 0.91015 1.22304 0.95456 0.96754 1.00377 1.24392 1.00194 1.01909 0.93397 1.87587 1.68633 1.35373 1.20590 1.24138 1.00962 0.97988 0.96444 0.92839 0.92020 0.94954 0.91122 0.92715 0.98942 0.98921 0.93374 0.91739 0.91191 0.88374 0.86604 0.88566 0.87701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.81 9.54 71.98 0.69 -4.12 16 2 C -0.11 -3.72 5.02 30.59 0.15 -3.56 16 3 C -0.06 -2.41 1.36 -10.79 -0.01 -2.42 16 4 H 0.05 1.85 8.13 -2.39 -0.02 1.83 16 5 C 0.03 1.47 4.24 29.85 0.13 1.59 16 6 C -0.50 -26.02 7.56 25.60 0.19 -25.83 16 7 H 0.06 3.18 5.70 -2.91 -0.02 3.17 16 8 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 9 N -0.94 -55.44 13.29 21.45 0.28 -55.16 16 10 Si 0.95 43.14 29.54 68.60 2.03 45.17 16 11 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 12 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 13 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 14 C -0.08 -2.58 2.08 -10.58 -0.02 -2.61 16 15 H 0.07 2.62 6.62 -2.39 -0.02 2.61 16 16 C -0.11 -3.58 4.50 31.31 0.14 -3.43 16 17 C -0.05 -1.35 7.52 72.72 0.55 -0.80 16 18 S -0.35 -9.93 23.23 -56.49 -1.31 -11.24 16 19 C -0.05 -1.32 6.23 72.22 0.45 -0.87 16 20 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 21 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 22 H 0.03 1.29 6.90 -2.39 -0.02 1.27 16 23 H 0.07 1.98 6.31 -2.39 -0.02 1.96 16 24 H 0.05 2.08 6.43 -2.39 -0.02 2.07 16 25 H -0.01 -0.41 6.83 -2.39 -0.02 -0.42 16 26 H -0.01 -0.41 6.81 -2.39 -0.02 -0.43 16 27 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 28 H 0.06 2.19 7.68 -2.39 -0.02 2.18 16 29 H 0.07 2.54 7.99 -2.39 -0.02 2.52 16 30 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 32 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.10 2.77 6.44 -2.39 -0.02 2.75 16 Total: -1.00 -58.73 265.74 4.79 -53.94 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: 1.07 Total: 8.91 kcal Atomic # 6 Polarization: -44.35 SS G_CDS: 2.72 Total: -41.63 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: 0.28 Total: -55.16 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: -9.93 SS G_CDS: -1.31 Total: -11.24 kcal Total: -58.73 4.79 -53.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260489216.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.986 kcal (2) G-P(sol) polarization free energy of solvation -58.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds