Wall clock time and date at job start Mon Mar 30 2020 02:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46813 * 2 1 4 4 H 1.08993 * 109.47122 * 185.06635 * 3 2 1 5 5 C 1.52998 * 109.47129 * 65.06229 * 3 2 1 6 6 C 1.50702 * 109.46993 * 65.00192 * 5 3 2 7 7 H 1.07996 * 119.99929 * 359.97438 * 6 5 3 8 8 C 1.37879 * 119.99870 * 179.97438 * 6 5 3 9 9 N 1.31513 * 120.00218 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99878 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47242 * 89.99893 * 10 8 6 12 12 H 1.48502 * 109.47096 * 209.99921 * 10 8 6 13 13 H 1.48498 * 109.47134 * 329.99995 * 10 8 6 14 14 C 1.53002 * 109.47189 * 305.06371 * 3 2 1 15 15 H 1.09005 * 109.46472 * 62.94607 * 14 3 2 16 16 C 1.54017 * 109.73170 * 183.23125 * 14 3 2 17 17 C 1.55131 * 106.98706 * 167.04293 * 16 14 3 18 18 S 1.83457 * 102.20390 * 317.93697 * 17 16 14 19 19 C 1.54272 * 109.60918 * 302.70031 * 14 3 2 20 20 H 1.09000 * 109.46489 * 184.86586 * 1 2 3 21 21 H 1.08997 * 109.47271 * 304.86806 * 1 2 3 22 22 H 1.09001 * 109.47062 * 64.86539 * 1 2 3 23 23 H 1.08991 * 109.47518 * 240.00118 * 2 1 3 24 24 H 1.08999 * 109.47502 * 119.99486 * 2 1 3 25 25 H 1.09000 * 109.46995 * 184.99779 * 5 3 2 26 26 H 1.09000 * 109.47379 * 305.00094 * 5 3 2 27 27 H 0.96998 * 120.00642 * 180.02562 * 9 8 6 28 28 H 1.08998 * 109.88747 * 47.67275 * 16 14 3 29 29 H 1.09003 * 110.00679 * 286.47825 * 16 14 3 30 30 H 1.08998 * 110.85437 * 199.75886 * 17 16 14 31 31 H 1.09005 * 111.03300 * 76.19348 * 17 16 14 32 32 H 1.09003 * 110.40006 * 93.33065 * 19 14 3 33 33 H 1.08999 * 110.40124 * 331.03469 * 19 14 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1261 1.4440 -0.0907 5 6 1.6365 2.1261 1.3080 6 6 2.3367 1.4557 2.4619 7 1 3.0025 0.6250 2.2804 8 6 2.1273 1.9030 3.7492 9 7 1.3170 2.9150 3.9701 10 14 2.9959 1.0726 5.1793 11 1 4.2986 1.7423 5.4236 12 1 2.1516 1.1731 6.3969 13 1 3.2278 -0.3577 4.8545 14 6 1.4286 2.1996 -1.1807 15 1 0.3459 2.2434 -1.0627 16 6 2.0001 3.6289 -1.2340 17 6 1.6091 4.2222 -2.6130 18 16 1.9120 2.8091 -3.7431 19 6 1.7770 1.4744 -2.4970 20 1 -0.3632 -1.0240 0.0872 21 1 -0.3633 0.5875 0.8431 22 1 -0.3633 0.4365 -0.9304 23 1 1.8934 -0.5138 -0.8899 24 1 1.8934 -0.5137 0.8900 25 1 1.9215 3.1775 1.2714 26 1 0.5577 2.0465 1.4419 27 1 1.1699 3.2300 4.8756 28 1 3.0852 3.5982 -1.1359 29 1 1.5711 4.2321 -0.4339 30 1 2.2492 5.0668 -2.8676 31 1 0.5591 4.5143 -2.6297 32 1 0.9830 0.7791 -2.7694 33 1 2.7262 0.9472 -2.4007 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260489227.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:37 Heat of formation + Delta-G solvation = -50.770336 kcal Electronic energy + Delta-G solvation = -12908.678219 eV Core-core repulsion = 10865.479273 eV Total energy + Delta-G solvation = -2043.198946 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.44953 -35.32289 -34.14147 -30.67947 -30.21633 -27.14582 -25.21102 -24.13819 -22.18037 -19.72569 -18.40230 -17.54988 -16.76960 -16.12433 -15.69294 -15.40354 -14.82244 -14.39977 -14.08932 -13.59589 -13.30398 -13.13680 -13.03278 -12.82584 -12.61119 -12.52111 -12.34913 -11.87659 -11.85105 -11.49752 -11.28299 -11.08650 -10.78778 -10.58475 -10.44099 -8.67646 -8.14788 -6.21871 0.95214 1.39895 1.40533 1.45975 1.50739 2.43065 3.19258 3.69179 3.74196 3.95824 4.19798 4.25690 4.37609 4.44505 4.50038 4.58774 4.77432 4.81795 4.85165 4.97934 5.08365 5.10668 5.20951 5.29396 5.36716 5.53286 5.58962 5.69862 5.87482 5.97800 6.34544 6.94641 7.45495 8.96474 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.044947 B = 0.007803 C = 0.007199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.810395 B = 3587.562702 C = 3888.308798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 C -0.062 4.062 4 H 0.052 0.948 5 C 0.034 3.966 6 C -0.526 4.526 7 H 0.057 0.943 8 C 0.002 3.998 9 N -0.932 5.932 10 Si 0.951 3.049 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.265 1.265 14 C -0.084 4.084 15 H 0.077 0.923 16 C -0.121 4.121 17 C -0.055 4.055 18 S -0.343 6.343 19 C -0.047 4.047 20 H 0.057 0.943 21 H 0.035 0.965 22 H 0.062 0.938 23 H 0.070 0.930 24 H 0.048 0.952 25 H -0.006 1.006 26 H 0.000 1.000 27 H 0.260 0.740 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.113 0.887 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.114 -1.738 -11.267 11.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 C -0.082 4.082 4 H 0.070 0.930 5 C -0.003 4.003 6 C -0.564 4.564 7 H 0.075 0.925 8 C -0.196 4.196 9 N -0.573 5.573 10 Si 0.777 3.223 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.189 1.189 14 C -0.103 4.103 15 H 0.095 0.905 16 C -0.160 4.160 17 C -0.203 4.203 18 S -0.117 6.117 19 C -0.195 4.195 20 H 0.076 0.924 21 H 0.054 0.946 22 H 0.081 0.919 23 H 0.089 0.911 24 H 0.066 0.934 25 H 0.012 0.988 26 H 0.018 0.982 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.131 0.869 31 H 0.116 0.884 32 H 0.122 0.878 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.031 -1.679 -12.335 12.449 hybrid contribution 0.104 -0.061 2.398 2.401 sum 0.135 -1.740 -9.937 10.089 Atomic orbital electron populations 1.21776 0.96061 1.01190 1.01211 1.21432 0.96211 0.95847 1.01021 1.21083 0.98367 0.95158 0.93577 0.92981 1.19085 0.95263 0.94373 0.91607 1.21666 1.26241 1.15934 0.92544 0.92511 1.25823 0.96190 0.95807 1.01758 1.70075 1.38323 1.27551 1.21396 0.85653 0.78443 0.79309 0.78906 1.20188 1.21146 1.18949 1.22002 1.01056 0.93788 0.93464 0.90498 1.22604 1.01778 0.95579 0.96035 1.24258 1.05484 0.96854 0.93653 1.87381 1.95418 1.07008 1.21924 1.24069 1.05689 0.96940 0.92820 0.92408 0.94597 0.91891 0.91126 0.93369 0.98769 0.98219 0.93123 0.91141 0.90627 0.86855 0.88366 0.87784 0.88766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.66 9.12 71.98 0.66 -4.00 16 2 C -0.11 -3.66 5.21 30.60 0.16 -3.50 16 3 C -0.06 -2.32 1.55 -10.79 -0.02 -2.34 16 4 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 5 C 0.03 1.65 4.18 29.85 0.12 1.77 16 6 C -0.53 -28.60 8.34 25.60 0.21 -28.38 16 7 H 0.06 3.00 7.08 -2.91 -0.02 2.98 16 8 C 0.00 0.09 5.46 84.66 0.46 0.55 16 9 N -0.93 -55.54 13.29 21.45 0.28 -55.26 16 10 Si 0.95 43.82 29.54 68.60 2.03 45.84 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 12 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 13 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 14 C -0.08 -2.58 1.62 -10.02 -0.02 -2.60 16 15 H 0.08 2.44 6.63 -2.38 -0.02 2.43 16 16 C -0.12 -3.65 5.11 31.67 0.16 -3.49 16 17 C -0.05 -1.36 7.38 72.71 0.54 -0.82 16 18 S -0.34 -9.34 23.26 -56.49 -1.31 -10.65 16 19 C -0.05 -1.26 5.56 72.41 0.40 -0.85 16 20 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 21 H 0.03 1.37 6.26 -2.39 -0.01 1.36 16 22 H 0.06 1.74 6.31 -2.39 -0.02 1.73 16 23 H 0.07 1.97 7.19 -2.39 -0.02 1.95 16 24 H 0.05 1.86 6.82 -2.39 -0.02 1.85 16 25 H -0.01 -0.32 6.63 -2.39 -0.02 -0.33 16 26 H 0.00 -0.02 6.25 -2.39 -0.01 -0.04 16 27 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 28 H 0.07 2.20 8.11 -2.39 -0.02 2.18 16 29 H 0.08 2.51 7.19 -2.39 -0.02 2.49 16 30 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.10 2.23 8.14 -2.38 -0.02 2.21 16 32 H 0.10 2.47 7.80 -2.39 -0.02 2.45 16 33 H 0.09 2.45 7.68 -2.39 -0.02 2.43 16 Total: -1.00 -59.84 265.76 4.75 -55.09 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: 1.07 Total: 8.64 kcal Atomic # 6 Polarization: -46.35 SS G_CDS: 2.68 Total: -43.66 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: 0.28 Total: -55.26 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: -9.34 SS G_CDS: -1.31 Total: -10.65 kcal Total: -59.84 4.75 -55.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260489227.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.320 kcal (2) G-P(sol) polarization free energy of solvation -59.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds