Wall clock time and date at job start Mon Mar 30 2020 02:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 C 1.53003 * 109.47202 * 240.00330 * 2 1 3 5 5 H 1.09000 * 109.46983 * 174.79560 * 4 2 1 6 6 C 1.53000 * 109.46943 * 294.79674 * 4 2 1 7 7 C 1.50700 * 109.47314 * 296.09201 * 6 4 2 8 8 H 1.08005 * 119.99628 * 354.58867 * 7 6 4 9 9 C 1.37873 * 120.00607 * 174.59172 * 7 6 4 10 10 N 1.31519 * 119.99543 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00174 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47352 * 90.00257 * 11 9 7 13 13 H 1.48501 * 109.47058 * 209.99737 * 11 9 7 14 14 H 1.48497 * 109.47303 * 329.99798 * 11 9 7 15 15 C 1.52998 * 109.47194 * 54.79235 * 4 2 1 16 16 H 1.09003 * 113.40262 * 50.33720 * 15 4 2 17 17 C 1.55886 * 114.38098 * 183.96715 * 15 4 2 18 18 C 1.55964 * 102.91001 * 137.58027 * 17 15 4 19 19 S 1.83079 * 114.38482 * 276.70386 * 15 4 2 20 20 H 1.09003 * 109.47143 * 60.00241 * 1 2 3 21 21 H 1.09004 * 109.46516 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46857 * 299.99571 * 1 2 3 23 23 H 1.08995 * 109.47170 * 120.00059 * 2 1 3 24 24 H 1.08994 * 109.47315 * 59.93995 * 3 2 1 25 25 H 1.09002 * 109.47011 * 179.97438 * 3 2 1 26 26 H 1.08999 * 109.47271 * 299.93595 * 3 2 1 27 27 H 1.09007 * 109.47376 * 56.08963 * 6 4 2 28 28 H 1.08997 * 109.47218 * 176.08738 * 6 4 2 29 29 H 0.96999 * 119.99707 * 180.02562 * 10 9 7 30 30 H 1.09002 * 110.82369 * 256.13314 * 17 15 4 31 31 H 1.08999 * 110.82175 * 19.06761 * 17 15 4 32 32 H 1.09010 * 114.39754 * 222.43335 * 18 17 15 33 33 H 1.09004 * 114.38691 * 89.23896 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 3.1261 -0.6411 -1.2971 6 6 1.6397 -2.1965 -1.1857 7 6 2.3215 -2.8519 -0.0124 8 1 3.0419 -2.2984 0.5717 9 6 2.0260 -4.1581 0.3153 10 7 1.1492 -4.8323 -0.3964 11 14 2.8718 -4.9707 1.7691 12 1 2.0710 -4.7424 2.9987 13 1 2.9912 -6.4298 1.5201 14 1 4.2255 -4.3861 1.9443 15 6 1.4260 -0.0795 -2.4951 16 1 1.5291 1.0054 -2.5188 17 6 1.7938 -0.7902 -3.8328 18 6 0.4383 -0.8045 -4.6040 19 16 -0.2496 -0.6886 -2.9113 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3632 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5138 0.8899 24 1 1.6758 1.9566 0.8894 25 1 3.1300 1.4425 0.0005 26 1 1.6775 1.9560 -0.8905 27 1 0.5588 -2.2749 -1.0679 28 1 1.9419 -2.6951 -2.1066 29 1 0.9410 -5.7512 -0.1657 30 1 2.5456 -0.2212 -4.3799 31 1 2.1454 -1.8053 -3.6483 32 1 0.2208 -1.7425 -5.1149 33 1 0.2629 0.0760 -5.2223 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260525464.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:19 Heat of formation + Delta-G solvation = -4.445316 kcal Electronic energy + Delta-G solvation = -13094.994616 eV Core-core repulsion = 11053.804474 eV Total energy + Delta-G solvation = -2041.190142 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -37.63748 -34.00913 -32.66671 -29.58690 -26.77977 -26.48911 -23.74472 -21.88936 -20.86233 -18.27204 -16.48620 -15.81477 -14.61990 -14.51108 -14.37515 -13.55440 -13.26511 -12.71984 -12.55190 -12.19600 -11.93831 -11.58565 -11.33541 -11.16658 -10.94977 -10.77383 -10.61396 -10.48848 -10.12707 -9.80182 -9.58839 -9.09712 -8.88952 -8.59915 -8.21445 -6.95086 -5.90811 -3.91970 2.24311 2.71976 3.35136 3.41930 3.44239 4.51397 4.95015 4.97855 5.26111 5.44111 5.53997 5.63313 5.68006 5.79320 5.82383 5.93621 6.07679 6.19123 6.36126 6.40451 6.46441 6.46712 6.74080 6.82164 7.02574 7.14407 7.27718 7.81826 7.98197 8.17646 8.51800 9.15433 9.70058 11.19632 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.030823 B = 0.010872 C = 0.009197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.185201 B = 2574.802875 C = 3043.781368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 C -0.148 4.148 4 C -0.062 4.062 5 H 0.068 0.932 6 C 0.027 3.973 7 C -0.516 4.516 8 H 0.052 0.948 9 C 0.059 3.941 10 N -0.891 5.891 11 Si 0.884 3.116 12 H -0.282 1.282 13 H -0.288 1.288 14 H -0.275 1.275 15 C -0.029 4.029 16 H 0.098 0.902 17 C -0.145 4.145 18 C -0.099 4.099 19 S -0.285 6.285 20 H 0.052 0.948 21 H 0.071 0.929 22 H 0.039 0.961 23 H 0.084 0.916 24 H 0.045 0.955 25 H 0.048 0.952 26 H 0.046 0.954 27 H 0.045 0.955 28 H 0.014 0.986 29 H 0.258 0.742 30 H 0.062 0.938 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.566 9.846 -4.681 10.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.101 4.101 3 C -0.205 4.205 4 C -0.081 4.081 5 H 0.086 0.914 6 C -0.010 4.010 7 C -0.554 4.554 8 H 0.071 0.929 9 C -0.142 4.142 10 N -0.530 5.530 11 Si 0.712 3.288 12 H -0.208 1.208 13 H -0.214 1.214 14 H -0.200 1.200 15 C -0.158 4.158 16 H 0.116 0.884 17 C -0.184 4.184 18 C -0.247 4.247 19 S -0.059 6.059 20 H 0.071 0.929 21 H 0.090 0.910 22 H 0.058 0.942 23 H 0.102 0.898 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.032 0.968 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.123 0.877 32 H 0.120 0.880 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.696 9.421 -4.098 10.297 hybrid contribution 1.414 -0.291 0.216 1.460 sum 0.718 9.130 -3.882 9.947 Atomic orbital electron populations 1.21935 0.95925 1.02973 0.99727 1.21034 0.95538 0.93955 0.99607 1.21951 1.00440 0.97606 1.00550 1.21156 0.98434 0.99030 0.89496 0.91377 1.19331 0.98613 0.86820 0.96245 1.21257 1.23569 0.97065 1.13535 0.92933 1.24968 0.95304 0.97517 0.96451 1.69983 1.33377 1.10304 1.39349 0.86729 0.80005 0.78700 0.83358 1.20820 1.21385 1.20025 1.24713 0.91912 1.00720 0.98418 0.88385 1.23663 0.97030 1.04183 0.93499 1.24589 0.98585 1.04724 0.96793 1.88628 1.23391 1.87173 1.06698 0.92938 0.91047 0.94157 0.89773 0.93576 0.93243 0.93485 0.93677 0.96792 0.93208 0.91886 0.87663 0.88038 0.89036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 7.72 37.16 0.29 -2.49 16 2 C -0.08 -1.54 2.58 -90.62 -0.23 -1.78 16 3 C -0.15 -2.23 9.00 37.16 0.33 -1.89 16 4 C -0.06 -1.22 1.82 -90.62 -0.16 -1.38 16 5 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 6 C 0.03 0.67 3.42 -27.88 -0.10 0.57 16 7 C -0.52 -14.15 8.21 -34.44 -0.28 -14.44 16 8 H 0.05 1.41 7.22 -52.48 -0.38 1.03 16 9 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 10 N -0.89 -26.68 13.29 55.43 0.74 -25.95 16 11 Si 0.88 21.65 29.54 -169.99 -5.02 16.62 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 C -0.03 -0.50 3.52 -25.19 -0.09 -0.59 16 16 H 0.10 1.49 6.48 -51.93 -0.34 1.16 16 17 C -0.15 -2.30 6.37 -23.60 -0.15 -2.45 16 18 C -0.10 -1.45 9.09 38.74 0.35 -1.10 16 19 S -0.28 -5.27 18.81 -107.50 -2.02 -7.29 16 20 H 0.05 0.95 5.49 -50.32 -0.28 0.67 16 21 H 0.07 1.57 6.48 -51.93 -0.34 1.23 16 22 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 23 H 0.08 1.74 6.85 -51.93 -0.36 1.39 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.66 6.47 -51.93 -0.34 0.32 16 27 H 0.05 1.22 5.23 -51.93 -0.27 0.95 16 28 H 0.01 0.37 6.17 -51.93 -0.32 0.05 16 29 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.10 1.91 6.07 -51.93 -0.32 1.59 16 32 H 0.10 1.43 8.14 -51.92 -0.42 1.01 16 33 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 261.89 15.07 3.95 3.95 Total: -1.00 -29.19 261.89 -7.52 -36.71 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -5.02 Total: -0.08 kcal Atomic # 6 Polarization: -23.83 SS G_CDS: -0.14 Total: -23.97 kcal Atomic # 7 Polarization: -26.68 SS G_CDS: 0.74 Total: -25.95 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: -5.27 SS G_CDS: -2.02 Total: -7.29 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -29.19 -7.52 -36.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260525464.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.269 kcal (2) G-P(sol) polarization free energy of solvation -29.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds