Wall clock time and date at job start Mon Mar 30 2020 02:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 C 1.53003 * 109.47202 * 240.00330 * 2 1 3 5 5 H 1.09000 * 109.46983 * 174.79560 * 4 2 1 6 6 C 1.53000 * 109.46943 * 294.79674 * 4 2 1 7 7 C 1.50700 * 109.47314 * 296.09201 * 6 4 2 8 8 H 1.08005 * 119.99628 * 354.58867 * 7 6 4 9 9 C 1.37873 * 120.00607 * 174.59172 * 7 6 4 10 10 N 1.31519 * 119.99543 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00174 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47352 * 90.00257 * 11 9 7 13 13 H 1.48501 * 109.47058 * 209.99737 * 11 9 7 14 14 H 1.48497 * 109.47303 * 329.99798 * 11 9 7 15 15 C 1.52998 * 109.47194 * 54.79235 * 4 2 1 16 16 H 1.09003 * 113.40262 * 50.33720 * 15 4 2 17 17 C 1.55886 * 114.38098 * 183.96715 * 15 4 2 18 18 C 1.55964 * 102.91001 * 137.58027 * 17 15 4 19 19 S 1.83079 * 114.38482 * 276.70386 * 15 4 2 20 20 H 1.09003 * 109.47143 * 60.00241 * 1 2 3 21 21 H 1.09004 * 109.46516 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46857 * 299.99571 * 1 2 3 23 23 H 1.08995 * 109.47170 * 120.00059 * 2 1 3 24 24 H 1.08994 * 109.47315 * 59.93995 * 3 2 1 25 25 H 1.09002 * 109.47011 * 179.97438 * 3 2 1 26 26 H 1.08999 * 109.47271 * 299.93595 * 3 2 1 27 27 H 1.09007 * 109.47376 * 56.08963 * 6 4 2 28 28 H 1.08997 * 109.47218 * 176.08738 * 6 4 2 29 29 H 0.96999 * 119.99707 * 180.02562 * 10 9 7 30 30 H 1.09002 * 110.82369 * 256.13314 * 17 15 4 31 31 H 1.08999 * 110.82175 * 19.06761 * 17 15 4 32 32 H 1.09010 * 114.39754 * 222.43335 * 18 17 15 33 33 H 1.09004 * 114.38691 * 89.23896 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 3.1261 -0.6411 -1.2971 6 6 1.6397 -2.1965 -1.1857 7 6 2.3215 -2.8519 -0.0124 8 1 3.0419 -2.2984 0.5717 9 6 2.0260 -4.1581 0.3153 10 7 1.1492 -4.8323 -0.3964 11 14 2.8718 -4.9707 1.7691 12 1 2.0710 -4.7424 2.9987 13 1 2.9912 -6.4298 1.5201 14 1 4.2255 -4.3861 1.9443 15 6 1.4260 -0.0795 -2.4951 16 1 1.5291 1.0054 -2.5188 17 6 1.7938 -0.7902 -3.8328 18 6 0.4383 -0.8045 -4.6040 19 16 -0.2496 -0.6886 -2.9113 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3632 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5138 0.8899 24 1 1.6758 1.9566 0.8894 25 1 3.1300 1.4425 0.0005 26 1 1.6775 1.9560 -0.8905 27 1 0.5588 -2.2749 -1.0679 28 1 1.9419 -2.6951 -2.1066 29 1 0.9410 -5.7512 -0.1657 30 1 2.5456 -0.2212 -4.3799 31 1 2.1454 -1.8053 -3.6483 32 1 0.2208 -1.7425 -5.1149 33 1 0.2629 0.0760 -5.2223 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260525464.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:19 Heat of formation + Delta-G solvation = -20.440362 kcal Electronic energy + Delta-G solvation = -13095.688213 eV Core-core repulsion = 11053.804474 eV Total energy + Delta-G solvation = -2041.883739 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.17922 -35.34533 -34.75129 -31.32008 -28.41532 -27.94190 -25.45389 -23.59976 -22.22512 -19.83388 -18.46596 -17.34804 -16.38825 -16.12553 -15.94529 -15.12480 -14.68722 -14.12086 -13.90864 -13.84107 -13.71482 -13.12973 -12.93956 -12.69232 -12.61269 -12.44622 -12.15105 -12.03180 -11.96105 -11.41461 -11.26055 -10.86441 -10.78018 -10.42915 -9.91640 -8.41974 -8.09412 -6.17169 0.90640 1.39830 1.40023 1.42105 1.50448 2.44635 3.23218 3.64239 3.70619 4.00204 4.19677 4.25335 4.29146 4.46027 4.54991 4.69354 4.84999 4.88612 4.91074 4.99335 5.09397 5.15552 5.24737 5.27601 5.43192 5.57239 5.64235 5.75127 5.94921 6.11386 6.38480 7.02038 7.48952 9.01277 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.030823 B = 0.010872 C = 0.009197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.185201 B = 2574.802875 C = 3043.781368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.083 4.083 3 C -0.138 4.138 4 C -0.058 4.058 5 H 0.072 0.928 6 C 0.038 3.962 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.001 3.999 10 N -0.931 5.931 11 Si 0.950 3.050 12 H -0.278 1.278 13 H -0.286 1.286 14 H -0.263 1.263 15 C -0.011 4.011 16 H 0.130 0.870 17 C -0.144 4.144 18 C -0.067 4.067 19 S -0.372 6.372 20 H 0.061 0.939 21 H 0.027 0.973 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.016 0.984 28 H -0.012 1.012 29 H 0.258 0.742 30 H 0.099 0.901 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.822 11.870 -5.040 13.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.101 4.101 3 C -0.196 4.196 4 C -0.077 4.077 5 H 0.090 0.910 6 C 0.001 3.999 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.196 4.196 10 N -0.572 5.572 11 Si 0.776 3.224 12 H -0.204 1.204 13 H -0.212 1.212 14 H -0.187 1.187 15 C -0.139 4.139 16 H 0.148 0.852 17 C -0.183 4.183 18 C -0.214 4.214 19 S -0.147 6.147 20 H 0.080 0.920 21 H 0.046 0.954 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.034 0.966 28 H 0.006 0.994 29 H 0.067 0.933 30 H 0.118 0.882 31 H 0.092 0.908 32 H 0.122 0.878 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.573 11.458 -4.453 12.307 hybrid contribution 1.000 -0.925 0.276 1.390 sum 1.574 10.533 -4.177 11.440 Atomic orbital electron populations 1.21826 0.96267 1.00511 1.01000 1.20985 0.95177 0.96328 0.97648 1.21848 1.01085 0.94533 1.02086 1.20990 0.98793 0.96023 0.91914 0.90975 1.19102 0.96496 0.90215 0.94063 1.21708 1.23268 0.97343 1.14089 0.92563 1.25827 0.96070 0.98418 0.99305 1.70132 1.35154 1.10580 1.41336 0.85674 0.79361 0.77552 0.79833 1.20389 1.21204 1.18696 1.24698 0.89447 1.02089 0.97672 0.85200 1.23534 0.98571 1.02729 0.93428 1.24743 0.95923 1.06488 0.94247 1.88998 1.26058 1.87905 1.11764 0.91994 0.95358 0.92511 0.92561 0.92188 0.92157 0.91832 0.96555 0.99372 0.93337 0.88225 0.90823 0.87827 0.85397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.21 7.72 71.98 0.56 -4.65 16 2 C -0.08 -3.01 2.58 -10.79 -0.03 -3.04 16 3 C -0.14 -3.71 9.00 71.98 0.65 -3.06 16 4 C -0.06 -2.25 1.82 -10.79 -0.02 -2.27 16 5 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 6 C 0.04 1.98 3.42 29.85 0.10 2.08 16 7 C -0.53 -29.54 8.21 25.60 0.21 -29.33 16 8 H 0.06 3.04 7.22 -2.91 -0.02 3.02 16 9 C 0.00 0.06 5.46 84.65 0.46 0.52 16 10 N -0.93 -57.77 13.29 21.45 0.28 -57.48 16 11 Si 0.95 45.07 29.54 68.60 2.03 47.09 16 12 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 13 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 14 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 15 C -0.01 -0.36 3.52 31.59 0.11 -0.25 16 16 H 0.13 3.42 6.48 -2.39 -0.02 3.40 16 17 C -0.14 -4.26 6.37 32.62 0.21 -4.05 16 18 C -0.07 -1.80 9.09 73.01 0.66 -1.13 16 19 S -0.37 -13.73 18.81 -56.49 -1.06 -14.79 16 20 H 0.06 2.20 5.49 -3.41 -0.02 2.19 16 21 H 0.03 1.28 6.48 -2.38 -0.02 1.27 16 22 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 23 H 0.06 2.34 6.85 -2.39 -0.02 2.32 16 24 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.06 1.50 6.47 -2.39 -0.02 1.49 16 27 H 0.02 0.93 5.23 -2.38 -0.01 0.92 16 28 H -0.01 -0.67 6.17 -2.39 -0.01 -0.68 16 29 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 30 H 0.10 2.23 8.14 -2.39 -0.02 2.22 16 31 H 0.07 2.67 6.07 -2.39 -0.01 2.66 16 32 H 0.10 2.76 8.14 -2.38 -0.02 2.74 16 33 H 0.13 2.58 8.14 -2.38 -0.02 2.56 16 Total: -1.00 -65.60 261.89 5.23 -60.37 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: 1.07 Total: 10.00 kcal Atomic # 6 Polarization: -48.10 SS G_CDS: 2.91 Total: -45.19 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: 0.28 Total: -57.48 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Atomic # 16 Polarization: -13.73 SS G_CDS: -1.06 Total: -14.79 kcal Total: -65.60 5.23 -60.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260525464.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.930 kcal (2) G-P(sol) polarization free energy of solvation -65.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds