Wall clock time and date at job start Mon Mar 30 2020 02:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47238 * 2 1 4 4 C 1.53001 * 109.47170 * 119.99841 * 2 1 3 5 5 H 1.08994 * 109.47168 * 294.57116 * 4 2 1 6 6 C 1.52998 * 109.47282 * 174.56812 * 4 2 1 7 7 C 1.50696 * 109.47021 * 69.92376 * 6 4 2 8 8 H 1.08005 * 120.00117 * 3.02781 * 7 6 4 9 9 C 1.37881 * 120.00155 * 183.03292 * 7 6 4 10 10 N 1.31511 * 119.99755 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00249 * 179.97438 * 9 7 6 12 12 H 1.48509 * 109.47167 * 59.99788 * 11 9 7 13 13 H 1.48498 * 109.47197 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47083 * 299.99719 * 11 9 7 15 15 C 1.53004 * 109.46951 * 54.56779 * 4 2 1 16 16 H 1.09002 * 112.52056 * 314.80073 * 15 4 2 17 17 C 1.53038 * 113.14854 * 184.99814 * 15 4 2 18 18 C 1.53043 * 89.91386 * 211.86915 * 17 15 4 19 19 S 1.81427 * 89.88926 * 32.87627 * 18 17 15 20 20 H 1.09000 * 109.47142 * 300.00305 * 1 2 3 21 21 H 1.09004 * 109.46853 * 60.00421 * 1 2 3 22 22 H 1.09000 * 109.46994 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47142 * 239.99695 * 2 1 3 24 24 H 1.08999 * 109.47539 * 191.07157 * 3 2 1 25 25 H 1.09000 * 109.46827 * 311.07357 * 3 2 1 26 26 H 1.08996 * 109.47051 * 71.07252 * 3 2 1 27 27 H 1.09003 * 109.47179 * 189.92171 * 6 4 2 28 28 H 1.09003 * 109.47160 * 309.92369 * 6 4 2 29 29 H 0.97007 * 119.99879 * 180.02562 * 10 9 7 30 30 H 1.09005 * 113.15256 * 96.59252 * 17 15 4 31 31 H 1.09004 * 113.15587 * 327.14789 * 17 15 4 32 32 H 1.08998 * 113.14441 * 148.13296 * 18 17 15 33 33 H 1.09000 * 113.14565 * 277.61515 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.7582 -0.1543 2.1365 6 6 3.5639 -0.8406 1.1829 7 6 4.1826 0.5222 1.3590 8 1 3.5547 1.3794 1.5525 9 6 5.5502 0.6748 1.2729 10 7 6.3147 -0.3691 1.0376 11 14 6.3171 2.3641 1.4904 12 1 5.9815 2.8903 2.8380 13 1 7.7921 2.2595 1.3536 14 1 5.7874 3.2855 0.4532 15 6 1.4215 -2.1189 1.3194 16 1 0.3517 -2.1130 1.1108 17 6 1.7801 -2.8718 2.6027 18 6 1.7313 -4.1959 1.8368 19 16 2.3314 -3.3521 0.3469 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 3.1120 1.4489 -0.1973 25 1 1.5245 2.0101 -0.7747 26 1 1.8468 1.8961 0.9721 27 1 3.9114 -1.5026 1.9761 28 1 3.8545 -1.2493 0.2151 29 1 7.2770 -0.2618 0.9775 30 1 1.0134 -2.7941 3.3736 31 1 2.7746 -2.6300 2.9778 32 1 2.4312 -4.9385 2.2199 33 1 0.7213 -4.5910 1.7280 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260525468.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:21 Heat of formation + Delta-G solvation = 2.554623 kcal Electronic energy + Delta-G solvation = -13097.487938 eV Core-core repulsion = 11056.601336 eV Total energy + Delta-G solvation = -2040.886602 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -37.88731 -34.68598 -32.59724 -29.62902 -27.59907 -25.36934 -23.44664 -21.97500 -20.62868 -18.97028 -16.63122 -15.96789 -14.70164 -14.49297 -13.94422 -13.58643 -13.16511 -12.85894 -12.29560 -11.97749 -11.89113 -11.66013 -11.47696 -10.97252 -10.88208 -10.73668 -10.49950 -10.41910 -10.15315 -9.82734 -9.55191 -9.20924 -8.93652 -8.71967 -8.20940 -7.00210 -5.89732 -3.88142 2.39431 2.53843 3.36143 3.41641 3.43108 4.51504 4.83918 5.13741 5.39433 5.44129 5.51276 5.66532 5.68938 5.75098 5.80610 5.96223 6.05203 6.27610 6.41884 6.43177 6.48780 6.65373 6.70796 6.83972 7.14127 7.19845 7.48644 7.83912 7.97729 8.15138 8.52754 9.15740 9.70440 11.20799 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.031044 B = 0.011039 C = 0.008982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.722867 B = 2535.848861 C = 3116.462559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.078 4.078 3 C -0.145 4.145 4 C -0.069 4.069 5 H 0.069 0.931 6 C 0.034 3.966 7 C -0.519 4.519 8 H 0.066 0.934 9 C 0.057 3.943 10 N -0.891 5.891 11 Si 0.881 3.119 12 H -0.278 1.278 13 H -0.289 1.289 14 H -0.277 1.277 15 C -0.048 4.048 16 H 0.099 0.901 17 C -0.123 4.123 18 C -0.098 4.098 19 S -0.277 6.277 20 H 0.049 0.951 21 H 0.045 0.955 22 H 0.048 0.952 23 H 0.059 0.941 24 H 0.096 0.904 25 H 0.024 0.976 26 H 0.045 0.955 27 H 0.020 0.980 28 H 0.029 0.971 29 H 0.258 0.742 30 H 0.076 0.924 31 H 0.109 0.891 32 H 0.089 0.911 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.542 -3.140 1.526 11.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.097 4.097 3 C -0.202 4.202 4 C -0.089 4.089 5 H 0.087 0.913 6 C -0.003 4.003 7 C -0.557 4.557 8 H 0.084 0.916 9 C -0.144 4.144 10 N -0.530 5.530 11 Si 0.710 3.290 12 H -0.204 1.204 13 H -0.215 1.215 14 H -0.203 1.203 15 C -0.177 4.177 16 H 0.117 0.883 17 C -0.161 4.161 18 C -0.246 4.246 19 S -0.051 6.051 20 H 0.068 0.932 21 H 0.064 0.936 22 H 0.067 0.933 23 H 0.078 0.922 24 H 0.115 0.885 25 H 0.043 0.957 26 H 0.064 0.936 27 H 0.038 0.962 28 H 0.048 0.952 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.127 0.873 32 H 0.107 0.893 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.608 -3.409 0.269 10.199 hybrid contribution -0.148 1.004 0.986 1.415 sum -9.756 -2.406 1.254 10.126 Atomic orbital electron populations 1.22005 0.97390 1.00536 1.00774 1.20954 0.93075 0.97336 0.98331 1.22236 1.04367 0.94285 0.99334 1.21340 0.99979 0.90330 0.97222 0.91294 1.19221 0.86416 0.96466 0.98192 1.21542 0.91654 0.94745 1.47801 0.91578 1.24990 0.97540 0.96017 0.95881 1.69983 1.04499 1.28987 1.49564 0.86832 0.78267 0.85330 0.78615 1.20410 1.21490 1.20307 1.24547 1.00267 0.98724 0.94137 0.88292 1.22957 1.04413 0.91914 0.96803 1.24110 1.03164 1.01185 0.96186 1.89099 1.70881 1.11853 1.33303 0.93237 0.93638 0.93284 0.92210 0.88507 0.95740 0.93569 0.96219 0.95231 0.93192 0.90509 0.87261 0.89271 0.89186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 8.75 37.16 0.33 -1.94 16 2 C -0.08 -1.47 2.50 -90.62 -0.23 -1.70 16 3 C -0.15 -2.84 7.55 37.16 0.28 -2.56 16 4 C -0.07 -1.37 1.61 -90.62 -0.15 -1.51 16 5 H 0.07 1.36 8.06 -51.93 -0.42 0.94 16 6 C 0.03 0.85 3.36 -27.89 -0.09 0.76 16 7 C -0.52 -13.90 6.52 -34.44 -0.22 -14.13 16 8 H 0.07 1.69 5.16 -52.48 -0.27 1.42 16 9 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 10 N -0.89 -26.65 13.29 55.43 0.74 -25.92 16 11 Si 0.88 21.42 29.54 -169.99 -5.02 16.40 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 C -0.05 -0.82 3.19 -26.71 -0.09 -0.90 16 16 H 0.10 1.48 5.83 -51.93 -0.30 1.18 16 17 C -0.12 -1.85 7.04 -26.69 -0.19 -2.04 16 18 C -0.10 -1.40 7.98 37.18 0.30 -1.10 16 19 S -0.28 -5.21 22.37 -107.50 -2.40 -7.62 16 20 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 21 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.05 0.69 6.06 -51.93 -0.31 0.38 16 23 H 0.06 1.23 8.11 -51.93 -0.42 0.81 16 24 H 0.10 2.20 5.61 -51.93 -0.29 1.91 16 25 H 0.02 0.42 8.10 -51.93 -0.42 -0.01 16 26 H 0.05 0.88 7.27 -51.93 -0.38 0.50 16 27 H 0.02 0.52 6.36 -51.93 -0.33 0.19 16 28 H 0.03 0.82 7.17 -51.93 -0.37 0.45 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.11 1.90 6.47 -51.93 -0.34 1.57 16 32 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 263.71 15.07 3.97 3.97 Total: -1.00 -29.09 263.71 -7.98 -37.06 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -5.10 Total: -0.28 kcal Atomic # 6 Polarization: -23.46 SS G_CDS: -0.16 Total: -23.62 kcal Atomic # 7 Polarization: -26.65 SS G_CDS: 0.74 Total: -25.92 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -5.21 SS G_CDS: -2.40 Total: -7.62 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.09 -7.98 -37.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260525468.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.619 kcal (2) G-P(sol) polarization free energy of solvation -29.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds