Wall clock time and date at job start Mon Mar 30 2020 02:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47238 * 2 1 4 4 C 1.53001 * 109.47170 * 119.99841 * 2 1 3 5 5 H 1.08994 * 109.47168 * 294.57116 * 4 2 1 6 6 C 1.52998 * 109.47282 * 174.56812 * 4 2 1 7 7 C 1.50696 * 109.47021 * 69.92376 * 6 4 2 8 8 H 1.08005 * 120.00117 * 3.02781 * 7 6 4 9 9 C 1.37881 * 120.00155 * 183.03292 * 7 6 4 10 10 N 1.31511 * 119.99755 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00249 * 179.97438 * 9 7 6 12 12 H 1.48509 * 109.47167 * 59.99788 * 11 9 7 13 13 H 1.48498 * 109.47197 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47083 * 299.99719 * 11 9 7 15 15 C 1.53004 * 109.46951 * 54.56779 * 4 2 1 16 16 H 1.09002 * 112.52056 * 314.80073 * 15 4 2 17 17 C 1.53038 * 113.14854 * 184.99814 * 15 4 2 18 18 C 1.53043 * 89.91386 * 211.86915 * 17 15 4 19 19 S 1.81427 * 89.88926 * 32.87627 * 18 17 15 20 20 H 1.09000 * 109.47142 * 300.00305 * 1 2 3 21 21 H 1.09004 * 109.46853 * 60.00421 * 1 2 3 22 22 H 1.09000 * 109.46994 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47142 * 239.99695 * 2 1 3 24 24 H 1.08999 * 109.47539 * 191.07157 * 3 2 1 25 25 H 1.09000 * 109.46827 * 311.07357 * 3 2 1 26 26 H 1.08996 * 109.47051 * 71.07252 * 3 2 1 27 27 H 1.09003 * 109.47179 * 189.92171 * 6 4 2 28 28 H 1.09003 * 109.47160 * 309.92369 * 6 4 2 29 29 H 0.97007 * 119.99879 * 180.02562 * 10 9 7 30 30 H 1.09005 * 113.15256 * 96.59252 * 17 15 4 31 31 H 1.09004 * 113.15587 * 327.14789 * 17 15 4 32 32 H 1.08998 * 113.14441 * 148.13296 * 18 17 15 33 33 H 1.09000 * 113.14565 * 277.61515 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.7582 -0.1543 2.1365 6 6 3.5639 -0.8406 1.1829 7 6 4.1826 0.5222 1.3590 8 1 3.5547 1.3794 1.5525 9 6 5.5502 0.6748 1.2729 10 7 6.3147 -0.3691 1.0376 11 14 6.3171 2.3641 1.4904 12 1 5.9815 2.8903 2.8380 13 1 7.7921 2.2595 1.3536 14 1 5.7874 3.2855 0.4532 15 6 1.4215 -2.1189 1.3194 16 1 0.3517 -2.1130 1.1108 17 6 1.7801 -2.8718 2.6027 18 6 1.7313 -4.1959 1.8368 19 16 2.3314 -3.3521 0.3469 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 3.1120 1.4489 -0.1973 25 1 1.5245 2.0101 -0.7747 26 1 1.8468 1.8961 0.9721 27 1 3.9114 -1.5026 1.9761 28 1 3.8545 -1.2493 0.2151 29 1 7.2770 -0.2618 0.9775 30 1 1.0134 -2.7941 3.3736 31 1 2.7746 -2.6300 2.9778 32 1 2.4312 -4.9385 2.2199 33 1 0.7213 -4.5910 1.7280 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260525468.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:21 Heat of formation + Delta-G solvation = -13.516600 kcal Electronic energy + Delta-G solvation = -13098.184839 eV Core-core repulsion = 11056.601336 eV Total energy + Delta-G solvation = -2041.583503 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.40483 -36.07237 -34.62838 -31.34777 -29.20745 -26.97205 -25.06132 -23.49738 -22.14083 -20.54010 -18.54462 -17.47123 -16.53829 -16.08632 -15.52341 -15.05795 -14.55112 -14.40006 -13.80389 -13.64416 -13.33353 -13.23109 -12.98867 -12.73129 -12.63356 -12.35600 -12.22793 -11.93847 -11.79880 -11.35207 -11.13446 -10.91400 -10.71034 -10.42842 -10.31269 -8.50670 -8.05940 -6.09775 1.14765 1.17471 1.41272 1.42915 1.49715 2.46725 3.26504 3.57662 3.84976 4.09486 4.23135 4.29957 4.32775 4.44371 4.62672 4.72190 4.86595 4.94296 4.96386 5.01359 5.15299 5.19324 5.24858 5.29553 5.51434 5.59191 5.72485 5.83957 5.96730 6.06321 6.41249 7.04553 7.52690 9.05221 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.031044 B = 0.011039 C = 0.008982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.722867 B = 2535.848861 C = 3116.462559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.078 4.078 3 C -0.142 4.142 4 C -0.064 4.064 5 H 0.076 0.924 6 C 0.048 3.952 7 C -0.519 4.519 8 H 0.078 0.922 9 C -0.004 4.004 10 N -0.936 5.936 11 Si 0.946 3.054 12 H -0.266 1.266 13 H -0.293 1.293 14 H -0.269 1.269 15 C -0.028 4.028 16 H 0.132 0.868 17 C -0.120 4.120 18 C -0.064 4.064 19 S -0.387 6.387 20 H 0.065 0.935 21 H 0.057 0.943 22 H 0.061 0.939 23 H 0.032 0.968 24 H 0.055 0.945 25 H 0.047 0.953 26 H 0.051 0.949 27 H -0.007 1.007 28 H -0.011 1.011 29 H 0.256 0.744 30 H 0.121 0.879 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.300 -2.416 2.758 13.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.097 4.097 3 C -0.199 4.199 4 C -0.084 4.084 5 H 0.095 0.905 6 C 0.010 3.990 7 C -0.558 4.558 8 H 0.096 0.904 9 C -0.200 4.200 10 N -0.578 5.578 11 Si 0.772 3.228 12 H -0.191 1.191 13 H -0.219 1.219 14 H -0.194 1.194 15 C -0.155 4.155 16 H 0.150 0.850 17 C -0.158 4.158 18 C -0.211 4.211 19 S -0.163 6.163 20 H 0.084 0.916 21 H 0.076 0.924 22 H 0.080 0.920 23 H 0.050 0.950 24 H 0.074 0.926 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.011 0.989 28 H 0.008 0.992 29 H 0.064 0.936 30 H 0.139 0.861 31 H 0.096 0.904 32 H 0.114 0.886 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.385 -2.672 1.509 12.760 hybrid contribution 0.681 0.746 0.598 1.174 sum -11.704 -1.926 2.107 12.047 Atomic orbital electron populations 1.21897 0.93647 1.01881 1.02252 1.20909 0.96120 0.96154 0.96492 1.22104 1.01964 0.95408 1.00385 1.21171 0.96363 0.92736 0.98087 0.90548 1.18972 0.90370 0.94717 0.94903 1.22024 0.91923 0.95935 1.45872 0.90363 1.25848 0.98438 0.99654 0.96094 1.70151 1.04503 1.31399 1.51735 0.85786 0.76966 0.80899 0.79159 1.19089 1.21877 1.19375 1.24619 1.01002 0.95965 0.93944 0.84990 1.22874 1.04042 0.91832 0.97066 1.24181 1.04887 1.00680 0.91386 1.89626 1.72703 1.16540 1.37401 0.91553 0.92399 0.91991 0.94985 0.92561 0.93427 0.92977 0.98873 0.99243 0.93574 0.86109 0.90431 0.88558 0.85408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 8.75 71.98 0.63 -3.08 16 2 C -0.08 -2.84 2.50 -10.79 -0.03 -2.87 16 3 C -0.14 -5.37 7.55 71.98 0.54 -4.82 16 4 C -0.06 -2.48 1.61 -10.79 -0.02 -2.50 16 5 H 0.08 2.86 8.06 -2.39 -0.02 2.84 16 6 C 0.05 2.46 3.36 29.85 0.10 2.56 16 7 C -0.52 -28.40 6.52 25.60 0.17 -28.24 16 8 H 0.08 4.00 5.16 -2.91 -0.01 3.98 16 9 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 10 N -0.94 -58.46 13.29 21.45 0.28 -58.18 16 11 Si 0.95 44.68 29.54 68.60 2.03 46.71 16 12 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 13 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 14 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 15 C -0.03 -0.88 3.19 30.61 0.10 -0.78 16 16 H 0.13 3.37 5.83 -2.39 -0.01 3.36 16 17 C -0.12 -3.30 7.04 30.62 0.22 -3.09 16 18 C -0.06 -1.65 7.98 72.00 0.57 -1.07 16 19 S -0.39 -14.78 22.37 -56.49 -1.26 -16.04 16 20 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 21 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 22 H 0.06 1.49 6.06 -2.39 -0.01 1.47 16 23 H 0.03 1.33 8.11 -2.39 -0.02 1.31 16 24 H 0.06 2.58 5.61 -2.39 -0.01 2.57 16 25 H 0.05 1.55 8.10 -2.39 -0.02 1.53 16 26 H 0.05 1.88 7.27 -2.39 -0.02 1.86 16 27 H -0.01 -0.39 6.36 -2.39 -0.02 -0.41 16 28 H -0.01 -0.64 7.17 -2.39 -0.02 -0.66 16 29 H 0.26 15.27 8.31 -92.70 -0.77 14.50 16 30 H 0.12 2.35 8.14 -2.38 -0.02 2.33 16 31 H 0.08 2.68 6.47 -2.39 -0.02 2.66 16 32 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.13 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -66.88 263.71 4.87 -62.01 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: 1.07 Total: 9.15 kcal Atomic # 6 Polarization: -46.39 SS G_CDS: 2.75 Total: -43.65 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: 0.28 Total: -58.18 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 16 Polarization: -14.78 SS G_CDS: -1.26 Total: -16.04 kcal Total: -66.88 4.87 -62.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260525468.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.492 kcal (2) G-P(sol) polarization free energy of solvation -66.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds