Wall clock time and date at job start Mon Mar 30 2020 02:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47232 * 2 1 4 4 C 1.53005 * 109.47084 * 119.99805 * 2 1 3 5 5 H 1.08994 * 109.47243 * 296.90707 * 4 2 1 6 6 C 1.52991 * 109.47105 * 176.90036 * 4 2 1 7 7 C 1.50698 * 109.47410 * 302.15182 * 6 4 2 8 8 H 1.08002 * 120.00084 * 354.36441 * 7 6 4 9 9 C 1.37877 * 120.00112 * 174.35596 * 7 6 4 10 10 N 1.31512 * 120.00271 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 120.00051 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46944 * 60.00542 * 11 9 7 13 13 H 1.48504 * 109.47107 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.47445 * 300.00693 * 11 9 7 15 15 C 1.53004 * 109.46832 * 56.90265 * 4 2 1 16 16 H 1.09002 * 112.49168 * 50.33323 * 15 4 2 17 17 C 1.53039 * 113.14823 * 180.10330 * 15 4 2 18 18 C 1.53043 * 89.86481 * 148.15656 * 17 15 4 19 19 S 1.81421 * 113.15027 * 280.55728 * 15 4 2 20 20 H 1.09004 * 109.46674 * 300.00130 * 1 2 3 21 21 H 1.08992 * 109.46872 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.46534 * 59.99620 * 1 2 3 23 23 H 1.08994 * 109.47392 * 240.00110 * 2 1 3 24 24 H 1.08991 * 109.47032 * 185.42447 * 3 2 1 25 25 H 1.08994 * 109.47244 * 305.42816 * 3 2 1 26 26 H 1.08998 * 109.46669 * 65.42775 * 3 2 1 27 27 H 1.09000 * 109.47327 * 62.15099 * 6 4 2 28 28 H 1.09004 * 109.47465 * 182.15035 * 6 4 2 29 29 H 0.97001 * 120.00517 * 180.02562 * 10 9 7 30 30 H 1.08996 * 113.15376 * 263.40780 * 17 15 4 31 31 H 1.09001 * 113.14693 * 32.90568 * 17 15 4 32 32 H 1.08996 * 113.14752 * 82.36673 * 18 17 15 33 33 H 1.09005 * 113.14801 * 211.85129 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.7227 -0.1764 2.1384 6 6 3.5680 -0.7891 1.2109 7 6 4.0081 -1.4963 -0.0449 8 1 3.2734 -1.9408 -0.7001 9 6 5.3485 -1.5759 -0.3577 10 7 6.2432 -1.0350 0.4402 11 14 5.8941 -2.4531 -1.9141 12 1 5.2890 -1.7873 -3.0956 13 1 7.3744 -2.3998 -2.0194 14 1 5.4526 -3.8700 -1.8644 15 6 1.4674 -2.1395 1.2889 16 1 1.6113 -2.6736 0.3497 17 6 1.9239 -2.9388 2.5115 18 6 0.5893 -3.6878 2.5156 19 16 -0.2433 -2.2014 1.8897 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3632 0.5139 -0.8900 23 1 1.8934 -0.5138 -0.8899 24 1 3.1257 1.4440 -0.0971 25 1 1.5996 1.9837 -0.8373 26 1 1.7583 1.9275 0.9346 27 1 3.9770 0.2212 1.2212 28 1 3.9294 -1.3363 2.0817 29 1 7.1862 -1.0906 0.2200 30 1 2.7774 -3.5850 2.3068 31 1 2.0710 -2.3205 3.3971 32 1 0.5633 -4.5207 1.8130 33 1 0.2617 -3.9743 3.5150 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260525471.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:23 Heat of formation + Delta-G solvation = -9.339172 kcal Electronic energy + Delta-G solvation = -13118.210625 eV Core-core repulsion = 11076.808269 eV Total energy + Delta-G solvation = -2041.402356 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -37.80100 -34.62905 -32.70446 -29.66258 -27.21793 -25.59802 -23.47289 -22.22333 -20.62479 -18.87591 -16.59149 -15.78792 -14.77763 -14.56823 -14.07524 -13.46506 -13.21093 -12.96871 -12.27763 -12.01319 -11.76820 -11.69156 -11.29244 -11.15271 -11.00679 -10.91804 -10.64511 -10.48631 -10.25345 -9.92622 -9.63647 -9.17276 -8.96981 -8.83116 -8.34560 -7.29000 -6.00649 -4.01709 2.31561 2.52892 3.31157 3.36675 3.38724 4.44745 4.96148 5.19973 5.35514 5.45280 5.63354 5.69471 5.76389 5.79703 5.92823 6.17447 6.23185 6.34059 6.39186 6.43888 6.52151 6.63508 6.74102 6.76630 6.96311 7.12606 7.25516 7.66714 7.77358 7.98368 8.41365 9.03417 9.61655 11.10313 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.029546 B = 0.011003 C = 0.009356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.459046 B = 2544.089089 C = 2991.905543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.084 4.084 3 C -0.139 4.139 4 C -0.064 4.064 5 H 0.054 0.946 6 C 0.030 3.970 7 C -0.510 4.510 8 H 0.055 0.945 9 C 0.059 3.941 10 N -0.894 5.894 11 Si 0.884 3.116 12 H -0.278 1.278 13 H -0.289 1.289 14 H -0.278 1.278 15 C -0.007 4.007 16 H 0.109 0.891 17 C -0.113 4.113 18 C -0.098 4.098 19 S -0.329 6.329 20 H 0.047 0.953 21 H 0.064 0.936 22 H 0.044 0.956 23 H 0.081 0.919 24 H 0.069 0.931 25 H 0.039 0.961 26 H 0.041 0.959 27 H 0.028 0.972 28 H 0.015 0.985 29 H 0.260 0.740 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.416 -1.762 1.924 8.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.102 4.102 3 C -0.196 4.196 4 C -0.083 4.083 5 H 0.072 0.928 6 C -0.009 4.009 7 C -0.549 4.549 8 H 0.073 0.927 9 C -0.142 4.142 10 N -0.534 5.534 11 Si 0.712 3.288 12 H -0.203 1.203 13 H -0.214 1.214 14 H -0.203 1.203 15 C -0.135 4.135 16 H 0.127 0.873 17 C -0.152 4.152 18 C -0.246 4.246 19 S -0.102 6.102 20 H 0.066 0.934 21 H 0.082 0.918 22 H 0.063 0.937 23 H 0.099 0.901 24 H 0.087 0.913 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.046 0.954 28 H 0.034 0.966 29 H 0.070 0.930 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.530 -1.062 1.952 9.786 hybrid contribution 1.321 -1.086 -0.947 1.955 sum -8.209 -2.148 1.005 8.545 Atomic orbital electron populations 1.22093 0.97203 1.01783 1.00379 1.21073 0.93111 0.96365 0.99695 1.21759 1.02435 0.95735 0.99659 1.21336 0.99638 0.90868 0.96501 0.92800 1.19174 0.86895 0.97816 0.96968 1.21148 0.91518 1.35049 1.07163 0.92660 1.24973 0.97019 0.95717 0.96465 1.69940 1.01227 1.45045 1.37159 0.86790 0.77504 0.80309 0.84200 1.20330 1.21433 1.20345 1.24274 0.86680 1.01372 1.01174 0.87320 1.22761 0.96421 0.97765 0.98250 1.24270 0.97771 0.98598 1.03926 1.88781 1.23869 1.28729 1.68809 0.93400 0.91752 0.93700 0.90108 0.91250 0.94230 0.94029 0.95417 0.96642 0.93035 0.89052 0.88868 0.88746 0.89715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 7.91 37.16 0.29 -2.34 16 2 C -0.08 -1.58 2.28 -90.61 -0.21 -1.79 16 3 C -0.14 -2.52 8.76 37.16 0.33 -2.19 16 4 C -0.06 -1.25 1.58 -90.62 -0.14 -1.39 16 5 H 0.05 1.05 8.10 -51.93 -0.42 0.63 16 6 C 0.03 0.71 4.26 -27.89 -0.12 0.59 16 7 C -0.51 -13.10 7.69 -34.44 -0.26 -13.37 16 8 H 0.06 1.39 5.86 -52.49 -0.31 1.08 16 9 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 10 N -0.89 -25.62 13.29 55.43 0.74 -24.88 16 11 Si 0.88 20.85 29.54 -169.99 -5.02 15.82 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 15 C -0.01 -0.13 2.11 -26.71 -0.06 -0.19 16 16 H 0.11 2.07 7.19 -51.93 -0.37 1.70 16 17 C -0.11 -1.83 6.16 -26.69 -0.16 -1.99 16 18 C -0.10 -1.39 7.98 37.18 0.30 -1.09 16 19 S -0.33 -5.49 20.85 -107.50 -2.24 -7.73 16 20 H 0.05 0.80 8.13 -51.93 -0.42 0.38 16 21 H 0.06 1.11 5.15 -38.76 -0.20 0.91 16 22 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.08 1.67 6.50 -51.93 -0.34 1.33 16 24 H 0.07 1.41 6.84 -51.93 -0.36 1.06 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.03 0.71 6.74 -51.93 -0.35 0.36 16 28 H 0.02 0.38 7.35 -51.93 -0.38 0.00 16 29 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.09 1.50 8.12 -51.93 -0.42 1.07 16 32 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 266.32 15.07 4.01 4.01 Total: -1.00 -27.07 266.32 -7.89 -34.96 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -5.24 Total: 0.07 kcal Atomic # 6 Polarization: -22.12 SS G_CDS: -0.14 Total: -22.25 kcal Atomic # 7 Polarization: -25.62 SS G_CDS: 0.74 Total: -24.88 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: -5.49 SS G_CDS: -2.24 Total: -7.73 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -27.07 -7.89 -34.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260525471.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.624 kcal (2) G-P(sol) polarization free energy of solvation -27.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds