Wall clock time and date at job start Mon Mar 30 2020 02:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47232 * 2 1 4 4 C 1.53005 * 109.47084 * 119.99805 * 2 1 3 5 5 H 1.08994 * 109.47243 * 296.90707 * 4 2 1 6 6 C 1.52991 * 109.47105 * 176.90036 * 4 2 1 7 7 C 1.50698 * 109.47410 * 302.15182 * 6 4 2 8 8 H 1.08002 * 120.00084 * 354.36441 * 7 6 4 9 9 C 1.37877 * 120.00112 * 174.35596 * 7 6 4 10 10 N 1.31512 * 120.00271 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 120.00051 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46944 * 60.00542 * 11 9 7 13 13 H 1.48504 * 109.47107 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.47445 * 300.00693 * 11 9 7 15 15 C 1.53004 * 109.46832 * 56.90265 * 4 2 1 16 16 H 1.09002 * 112.49168 * 50.33323 * 15 4 2 17 17 C 1.53039 * 113.14823 * 180.10330 * 15 4 2 18 18 C 1.53043 * 89.86481 * 148.15656 * 17 15 4 19 19 S 1.81421 * 113.15027 * 280.55728 * 15 4 2 20 20 H 1.09004 * 109.46674 * 300.00130 * 1 2 3 21 21 H 1.08992 * 109.46872 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.46534 * 59.99620 * 1 2 3 23 23 H 1.08994 * 109.47392 * 240.00110 * 2 1 3 24 24 H 1.08991 * 109.47032 * 185.42447 * 3 2 1 25 25 H 1.08994 * 109.47244 * 305.42816 * 3 2 1 26 26 H 1.08998 * 109.46669 * 65.42775 * 3 2 1 27 27 H 1.09000 * 109.47327 * 62.15099 * 6 4 2 28 28 H 1.09004 * 109.47465 * 182.15035 * 6 4 2 29 29 H 0.97001 * 120.00517 * 180.02562 * 10 9 7 30 30 H 1.08996 * 113.15376 * 263.40780 * 17 15 4 31 31 H 1.09001 * 113.14693 * 32.90568 * 17 15 4 32 32 H 1.08996 * 113.14752 * 82.36673 * 18 17 15 33 33 H 1.09005 * 113.14801 * 211.85129 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.7227 -0.1764 2.1384 6 6 3.5680 -0.7891 1.2109 7 6 4.0081 -1.4963 -0.0449 8 1 3.2734 -1.9408 -0.7001 9 6 5.3485 -1.5759 -0.3577 10 7 6.2432 -1.0350 0.4402 11 14 5.8941 -2.4531 -1.9141 12 1 5.2890 -1.7873 -3.0956 13 1 7.3744 -2.3998 -2.0194 14 1 5.4526 -3.8700 -1.8644 15 6 1.4674 -2.1395 1.2889 16 1 1.6113 -2.6736 0.3497 17 6 1.9239 -2.9388 2.5115 18 6 0.5893 -3.6878 2.5156 19 16 -0.2433 -2.2014 1.8897 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3632 0.5139 -0.8900 23 1 1.8934 -0.5138 -0.8899 24 1 3.1257 1.4440 -0.0971 25 1 1.5996 1.9837 -0.8373 26 1 1.7583 1.9275 0.9346 27 1 3.9770 0.2212 1.2212 28 1 3.9294 -1.3363 2.0817 29 1 7.1862 -1.0906 0.2200 30 1 2.7774 -3.5850 2.3068 31 1 2.0710 -2.3205 3.3971 32 1 0.5633 -4.5207 1.8130 33 1 0.2617 -3.9743 3.5150 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260525471.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:22 Heat of formation + Delta-G solvation = -22.519970 kcal Electronic energy + Delta-G solvation = -13118.782187 eV Core-core repulsion = 11076.808269 eV Total energy + Delta-G solvation = -2041.973918 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.34703 -36.00825 -34.70317 -31.39064 -28.71771 -27.31518 -25.10058 -23.73344 -22.09842 -20.55387 -18.23320 -17.46936 -16.52429 -16.18182 -15.55361 -15.02581 -14.59261 -14.45268 -14.12227 -13.51145 -13.22559 -13.14075 -12.96762 -12.69565 -12.56173 -12.48033 -12.36169 -12.20338 -12.00680 -11.58654 -11.14585 -10.70702 -10.67168 -10.56193 -10.37178 -8.60878 -8.09132 -6.14998 1.04391 1.17142 1.43904 1.44542 1.51385 2.46753 3.25634 3.66404 3.83757 4.09005 4.22264 4.28096 4.38548 4.53489 4.62547 4.74051 4.84071 4.92138 4.94657 5.03871 5.08154 5.14358 5.24572 5.28273 5.34357 5.53070 5.62131 5.72570 5.82323 5.95312 6.38053 6.99028 7.51708 9.02297 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.029546 B = 0.011003 C = 0.009356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.459046 B = 2544.089089 C = 2991.905543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.134 4.134 4 C -0.055 4.055 5 H 0.055 0.945 6 C 0.039 3.961 7 C -0.507 4.507 8 H 0.061 0.939 9 C 0.005 3.995 10 N -0.933 5.933 11 Si 0.944 3.056 12 H -0.273 1.273 13 H -0.291 1.291 14 H -0.268 1.268 15 C -0.014 4.014 16 H 0.097 0.903 17 C -0.114 4.114 18 C -0.080 4.080 19 S -0.331 6.331 20 H 0.050 0.950 21 H 0.062 0.938 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.038 0.962 25 H 0.059 0.941 26 H 0.050 0.950 27 H -0.001 1.001 28 H -0.003 1.003 29 H 0.259 0.741 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.999 -2.634 1.553 10.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.102 4.102 3 C -0.192 4.192 4 C -0.075 4.075 5 H 0.073 0.927 6 C 0.000 4.000 7 C -0.545 4.545 8 H 0.079 0.921 9 C -0.192 4.192 10 N -0.574 5.574 11 Si 0.771 3.229 12 H -0.198 1.198 13 H -0.217 1.217 14 H -0.193 1.193 15 C -0.142 4.142 16 H 0.115 0.885 17 C -0.153 4.153 18 C -0.228 4.228 19 S -0.104 6.104 20 H 0.069 0.931 21 H 0.080 0.920 22 H 0.079 0.921 23 H 0.079 0.921 24 H 0.057 0.943 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.017 0.983 28 H 0.015 0.985 29 H 0.067 0.933 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.128 0.872 33 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -11.133 -1.941 1.577 11.410 hybrid contribution 1.788 -0.796 -0.790 2.110 sum -9.345 -2.737 0.787 9.769 Atomic orbital electron populations 1.21965 0.95035 1.01987 1.01322 1.21031 0.94841 0.96211 0.98140 1.21701 1.00448 0.95902 1.01102 1.21165 0.96673 0.92531 0.97097 0.92703 1.19000 0.89930 0.95497 0.95568 1.21450 0.91538 1.34048 1.07473 0.92130 1.25744 0.97375 0.96699 0.99384 1.70073 1.01373 1.46884 1.39090 0.85811 0.76783 0.79622 0.80706 1.19809 1.21684 1.19258 1.24157 0.88453 1.00060 1.01561 0.88488 1.22745 0.97472 0.97771 0.97327 1.24282 0.95265 0.97625 1.05592 1.88749 1.22150 1.30673 1.68828 0.93100 0.91959 0.92060 0.92137 0.94332 0.92153 0.93049 0.98306 0.98465 0.93264 0.89699 0.88936 0.87218 0.87339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.58 7.91 71.98 0.57 -4.01 16 2 C -0.08 -3.09 2.28 -10.79 -0.02 -3.12 16 3 C -0.13 -4.81 8.76 71.98 0.63 -4.18 16 4 C -0.05 -2.15 1.58 -10.79 -0.02 -2.16 16 5 H 0.05 2.12 8.10 -2.39 -0.02 2.11 16 6 C 0.04 1.88 4.26 29.84 0.13 2.01 16 7 C -0.51 -26.30 7.69 25.60 0.20 -26.10 16 8 H 0.06 3.03 5.86 -2.91 -0.02 3.02 16 9 C 0.01 0.29 5.46 84.66 0.46 0.75 16 10 N -0.93 -54.66 13.29 21.45 0.28 -54.37 16 11 Si 0.94 42.86 29.54 68.60 2.03 44.89 16 12 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 13 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 14 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 15 C -0.01 -0.49 2.11 30.61 0.06 -0.43 16 16 H 0.10 3.62 7.19 -2.39 -0.02 3.60 16 17 C -0.11 -3.55 6.16 30.62 0.19 -3.36 16 18 C -0.08 -2.04 7.98 72.00 0.57 -1.47 16 19 S -0.33 -10.27 20.85 -56.49 -1.18 -11.45 16 20 H 0.05 1.57 8.13 -2.38 -0.02 1.55 16 21 H 0.06 2.01 5.15 -10.77 -0.06 1.96 16 22 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.06 2.48 6.50 -2.39 -0.02 2.46 16 24 H 0.04 1.60 6.84 -2.39 -0.02 1.58 16 25 H 0.06 1.87 8.14 -2.39 -0.02 1.86 16 26 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.00 -0.08 6.74 -2.39 -0.02 -0.09 16 28 H 0.00 -0.15 7.35 -2.39 -0.02 -0.17 16 29 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 30 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 31 H 0.09 2.88 8.12 -2.39 -0.02 2.86 16 32 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.11 2.31 8.14 -2.38 -0.02 2.29 16 Total: -1.00 -57.37 266.32 4.93 -52.45 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: 1.02 Total: 10.56 kcal Atomic # 6 Polarization: -44.85 SS G_CDS: 2.77 Total: -42.08 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: 0.28 Total: -54.37 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 16 Polarization: -10.27 SS G_CDS: -1.18 Total: -11.45 kcal Total: -57.37 4.93 -52.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260525471.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.929 kcal (2) G-P(sol) polarization free energy of solvation -57.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds