Wall clock time and date at job start Mon Mar 30 2020 02:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.52998 * 109.47440 * 2 1 4 4 C 1.53007 * 109.47088 * 120.00132 * 2 1 3 5 5 H 1.09004 * 109.46352 * 303.14024 * 4 2 1 6 6 C 1.52996 * 109.47224 * 63.14152 * 4 2 1 7 7 C 1.50701 * 109.46975 * 62.21756 * 6 4 2 8 8 H 1.07999 * 119.99855 * 354.80925 * 7 6 4 9 9 C 1.37877 * 120.00095 * 174.82471 * 7 6 4 10 10 N 1.31515 * 119.99680 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00037 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47240 * 59.99721 * 11 9 7 13 13 H 1.48504 * 109.47035 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47465 * 299.99302 * 11 9 7 15 15 C 1.53000 * 109.46999 * 183.14697 * 4 2 1 16 16 H 1.09003 * 113.40844 * 310.86561 * 15 4 2 17 17 C 1.55885 * 114.37730 * 177.18522 * 15 4 2 18 18 C 1.55889 * 102.94847 * 222.39971 * 17 15 4 19 19 S 1.83082 * 82.43861 * 24.20590 * 18 17 15 20 20 H 1.09004 * 109.47619 * 173.42108 * 1 2 3 21 21 H 1.09001 * 109.47671 * 293.42748 * 1 2 3 22 22 H 1.09008 * 109.46998 * 53.42566 * 1 2 3 23 23 H 1.09006 * 109.47586 * 240.00006 * 2 1 3 24 24 H 1.08998 * 109.47786 * 180.02562 * 3 2 1 25 25 H 1.09005 * 109.46997 * 299.99775 * 3 2 1 26 26 H 1.09007 * 109.47186 * 59.99743 * 3 2 1 27 27 H 1.08996 * 109.46829 * 302.21414 * 6 4 2 28 28 H 1.09000 * 109.47076 * 182.21323 * 6 4 2 29 29 H 0.97005 * 120.00182 * 180.02562 * 10 9 7 30 30 H 1.09002 * 110.82583 * 340.93089 * 17 15 4 31 31 H 1.08999 * 110.82555 * 103.86676 * 17 15 4 32 32 H 1.08997 * 114.37986 * 270.81118 * 18 17 15 33 33 H 1.08998 * 114.38174 * 137.59709 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6312 -0.2409 2.1383 6 6 1.5955 -2.1848 1.2104 7 6 2.2047 -2.8630 0.0104 8 1 2.7758 -2.2875 -0.7031 9 6 2.0328 -4.2181 -0.1768 10 7 1.3375 -4.9189 0.6922 11 14 2.7874 -5.0587 -1.6645 12 1 4.2619 -4.8846 -1.6366 13 1 2.4597 -6.5068 -1.6341 14 1 2.2408 -4.4531 -2.9054 15 6 3.5678 -0.6531 1.2895 16 1 4.0392 -0.9434 0.3505 17 6 4.2075 -1.2962 2.5573 18 6 5.3193 -0.2743 2.9442 19 16 4.2367 0.8831 2.0276 20 1 -0.3634 -1.0209 -0.1177 21 1 -0.3634 0.4086 0.9429 22 1 -0.3633 0.6124 -0.8254 23 1 1.8933 -0.5138 -0.8900 24 1 3.1299 1.4425 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 0.5087 -2.2327 1.1421 28 1 1.9251 -2.6889 2.1189 29 1 1.2169 -5.8724 0.5608 30 1 3.4726 -1.3904 3.3568 31 1 4.6399 -2.2687 2.3222 32 1 6.2839 -0.4584 2.4713 33 1 5.3921 -0.0717 4.0127 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260525476.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:24 Heat of formation + Delta-G solvation = -11.346013 kcal Electronic energy + Delta-G solvation = -13050.782505 eV Core-core repulsion = 11009.293126 eV Total energy + Delta-G solvation = -2041.489379 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -37.51076 -34.05997 -32.72267 -29.70884 -27.37364 -25.73152 -23.85894 -22.01851 -20.33973 -18.90218 -16.58023 -15.70542 -14.82124 -14.62244 -13.99776 -13.57327 -13.09674 -12.88206 -12.42549 -12.15110 -11.80781 -11.68951 -11.31958 -11.17988 -11.06669 -10.86497 -10.69548 -10.55826 -10.29636 -9.98227 -9.59000 -9.26994 -8.85471 -8.64976 -8.36055 -7.27291 -6.01892 -4.03174 2.19857 2.65657 3.30615 3.36079 3.38179 4.43823 4.96339 5.08647 5.33623 5.34409 5.57673 5.63005 5.70888 5.79302 5.91608 6.15571 6.19343 6.31649 6.39947 6.41767 6.48763 6.60823 6.70588 6.73915 6.90970 7.07347 7.19989 7.64959 7.74690 7.96849 8.39534 9.01913 9.60397 11.09070 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.027741 B = 0.011163 C = 0.009251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.103636 B = 2507.675101 C = 3026.087891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.085 4.085 3 C -0.151 4.151 4 C -0.056 4.056 5 H 0.056 0.944 6 C 0.030 3.970 7 C -0.512 4.512 8 H 0.056 0.944 9 C 0.059 3.941 10 N -0.894 5.894 11 Si 0.884 3.116 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.277 1.277 15 C 0.021 3.979 16 H 0.111 0.889 17 C -0.138 4.138 18 C -0.081 4.081 19 S -0.361 6.361 20 H 0.067 0.933 21 H 0.043 0.957 22 H 0.040 0.960 23 H 0.080 0.920 24 H 0.058 0.942 25 H 0.044 0.956 26 H 0.049 0.951 27 H 0.023 0.977 28 H 0.022 0.978 29 H 0.260 0.740 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.619 7.699 1.726 8.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.103 4.103 3 C -0.209 4.209 4 C -0.076 4.076 5 H 0.074 0.926 6 C -0.009 4.009 7 C -0.551 4.551 8 H 0.074 0.926 9 C -0.142 4.142 10 N -0.533 5.533 11 Si 0.712 3.288 12 H -0.203 1.203 13 H -0.214 1.214 14 H -0.203 1.203 15 C -0.106 4.106 16 H 0.129 0.871 17 C -0.177 4.177 18 C -0.230 4.230 19 S -0.135 6.135 20 H 0.086 0.914 21 H 0.062 0.938 22 H 0.059 0.941 23 H 0.098 0.902 24 H 0.076 0.924 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.041 0.959 28 H 0.040 0.960 29 H 0.070 0.930 30 H 0.107 0.893 31 H 0.097 0.903 32 H 0.114 0.886 33 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.389 8.873 1.705 9.650 hybrid contribution 0.692 -1.698 -0.752 1.982 sum 4.082 7.175 0.953 8.310 Atomic orbital electron populations 1.21772 0.95750 1.02198 0.99935 1.21067 0.95538 0.94183 0.99538 1.21999 1.01077 0.97314 1.00479 1.21236 0.89723 1.00057 0.96617 0.92586 1.19180 0.96702 0.87508 0.97461 1.21157 1.32830 0.92856 1.08213 0.92590 1.24976 0.95383 0.97665 0.96145 1.69943 1.40407 1.07377 1.35616 0.86779 0.79731 0.78559 0.83684 1.20335 1.21420 1.20288 1.24497 0.99970 0.86722 0.99424 0.87061 1.23495 0.96213 1.00138 0.97836 1.24600 0.99265 0.96749 1.02344 1.88355 1.47893 1.21065 1.56184 0.91408 0.93812 0.94066 0.90213 0.92360 0.93727 0.93235 0.95929 0.96008 0.93017 0.89296 0.90281 0.88637 0.88326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 8.73 37.15 0.32 -2.11 16 2 C -0.08 -1.56 2.33 -90.62 -0.21 -1.78 16 3 C -0.15 -2.50 8.09 37.16 0.30 -2.20 16 4 C -0.06 -1.10 1.57 -90.62 -0.14 -1.25 16 5 H 0.06 1.09 8.09 -51.93 -0.42 0.67 16 6 C 0.03 0.72 4.35 -27.88 -0.12 0.60 16 7 C -0.51 -13.17 7.74 -34.44 -0.27 -13.43 16 8 H 0.06 1.40 5.87 -52.49 -0.31 1.10 16 9 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 10 N -0.89 -25.61 13.29 55.43 0.74 -24.88 16 11 Si 0.88 20.85 29.54 -169.99 -5.02 15.82 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 15 C 0.02 0.40 2.62 -25.19 -0.07 0.33 16 16 H 0.11 2.17 7.27 -51.93 -0.38 1.80 16 17 C -0.14 -2.34 5.83 -23.65 -0.14 -2.48 16 18 C -0.08 -1.17 9.09 38.70 0.35 -0.82 16 19 S -0.36 -6.15 20.88 -107.50 -2.24 -8.39 16 20 H 0.07 1.31 6.80 -51.93 -0.35 0.96 16 21 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 22 H 0.04 0.64 8.14 -51.92 -0.42 0.21 16 23 H 0.08 1.60 6.57 -51.93 -0.34 1.26 16 24 H 0.06 1.00 5.53 -51.47 -0.28 0.71 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.02 0.57 6.55 -51.93 -0.34 0.23 16 28 H 0.02 0.55 7.61 -51.93 -0.39 0.16 16 29 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.09 1.53 7.95 -51.93 -0.41 1.12 16 31 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 268.36 15.07 4.04 4.04 Total: -1.00 -27.15 268.36 -7.88 -35.02 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -5.33 Total: -0.01 kcal Atomic # 6 Polarization: -21.55 SS G_CDS: -0.07 Total: -21.61 kcal Atomic # 7 Polarization: -25.61 SS G_CDS: 0.74 Total: -24.88 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: -6.15 SS G_CDS: -2.24 Total: -8.39 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -27.15 -7.88 -35.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260525476.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.678 kcal (2) G-P(sol) polarization free energy of solvation -27.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds