Wall clock time and date at job start Mon Mar 30 2020 02:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.52998 * 109.47440 * 2 1 4 4 C 1.53007 * 109.47088 * 120.00132 * 2 1 3 5 5 H 1.09004 * 109.46352 * 303.14024 * 4 2 1 6 6 C 1.52996 * 109.47224 * 63.14152 * 4 2 1 7 7 C 1.50701 * 109.46975 * 62.21756 * 6 4 2 8 8 H 1.07999 * 119.99855 * 354.80925 * 7 6 4 9 9 C 1.37877 * 120.00095 * 174.82471 * 7 6 4 10 10 N 1.31515 * 119.99680 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00037 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47240 * 59.99721 * 11 9 7 13 13 H 1.48504 * 109.47035 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47465 * 299.99302 * 11 9 7 15 15 C 1.53000 * 109.46999 * 183.14697 * 4 2 1 16 16 H 1.09003 * 113.40844 * 310.86561 * 15 4 2 17 17 C 1.55885 * 114.37730 * 177.18522 * 15 4 2 18 18 C 1.55889 * 102.94847 * 222.39971 * 17 15 4 19 19 S 1.83082 * 82.43861 * 24.20590 * 18 17 15 20 20 H 1.09004 * 109.47619 * 173.42108 * 1 2 3 21 21 H 1.09001 * 109.47671 * 293.42748 * 1 2 3 22 22 H 1.09008 * 109.46998 * 53.42566 * 1 2 3 23 23 H 1.09006 * 109.47586 * 240.00006 * 2 1 3 24 24 H 1.08998 * 109.47786 * 180.02562 * 3 2 1 25 25 H 1.09005 * 109.46997 * 299.99775 * 3 2 1 26 26 H 1.09007 * 109.47186 * 59.99743 * 3 2 1 27 27 H 1.08996 * 109.46829 * 302.21414 * 6 4 2 28 28 H 1.09000 * 109.47076 * 182.21323 * 6 4 2 29 29 H 0.97005 * 120.00182 * 180.02562 * 10 9 7 30 30 H 1.09002 * 110.82583 * 340.93089 * 17 15 4 31 31 H 1.08999 * 110.82555 * 103.86676 * 17 15 4 32 32 H 1.08997 * 114.37986 * 270.81118 * 18 17 15 33 33 H 1.08998 * 114.38174 * 137.59709 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6312 -0.2409 2.1383 6 6 1.5955 -2.1848 1.2104 7 6 2.2047 -2.8630 0.0104 8 1 2.7758 -2.2875 -0.7031 9 6 2.0328 -4.2181 -0.1768 10 7 1.3375 -4.9189 0.6922 11 14 2.7874 -5.0587 -1.6645 12 1 4.2619 -4.8846 -1.6366 13 1 2.4597 -6.5068 -1.6341 14 1 2.2408 -4.4531 -2.9054 15 6 3.5678 -0.6531 1.2895 16 1 4.0392 -0.9434 0.3505 17 6 4.2075 -1.2962 2.5573 18 6 5.3193 -0.2743 2.9442 19 16 4.2367 0.8831 2.0276 20 1 -0.3634 -1.0209 -0.1177 21 1 -0.3634 0.4086 0.9429 22 1 -0.3633 0.6124 -0.8254 23 1 1.8933 -0.5138 -0.8900 24 1 3.1299 1.4425 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 0.5087 -2.2327 1.1421 28 1 1.9251 -2.6889 2.1189 29 1 1.2169 -5.8724 0.5608 30 1 3.4726 -1.3904 3.3568 31 1 4.6399 -2.2687 2.3222 32 1 6.2839 -0.4584 2.4713 33 1 5.3921 -0.0717 4.0127 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260525476.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:24 Heat of formation + Delta-G solvation = -24.499489 kcal Electronic energy + Delta-G solvation = -13051.352883 eV Core-core repulsion = 11009.293126 eV Total energy + Delta-G solvation = -2042.059756 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.08260 -35.42516 -34.72605 -31.40882 -28.86649 -27.38392 -25.50879 -23.62890 -21.77546 -20.57627 -18.26149 -17.38927 -16.54195 -16.24254 -15.47304 -15.08876 -14.52245 -14.41011 -14.17707 -13.60583 -13.23733 -13.15981 -13.02723 -12.79067 -12.58962 -12.49787 -12.39396 -12.21244 -12.00863 -11.58416 -11.17920 -10.93086 -10.72657 -10.44398 -10.04887 -8.61860 -8.10594 -6.16798 0.88244 1.29360 1.43319 1.43949 1.50880 2.45787 3.24200 3.60950 3.74092 3.97611 4.15243 4.25502 4.29025 4.52148 4.63257 4.70156 4.84897 4.88607 4.94257 5.02054 5.08075 5.11057 5.22033 5.25553 5.33641 5.51699 5.60611 5.70816 5.79283 5.93488 6.36154 6.97102 7.50135 9.00847 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.027741 B = 0.011163 C = 0.009251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.103636 B = 2507.675101 C = 3026.087891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.084 4.084 3 C -0.139 4.139 4 C -0.046 4.046 5 H 0.057 0.943 6 C 0.039 3.961 7 C -0.510 4.510 8 H 0.061 0.939 9 C 0.006 3.994 10 N -0.933 5.933 11 Si 0.945 3.055 12 H -0.268 1.268 13 H -0.290 1.290 14 H -0.272 1.272 15 C 0.011 3.989 16 H 0.098 0.902 17 C -0.141 4.141 18 C -0.058 4.058 19 S -0.364 6.364 20 H 0.040 0.960 21 H 0.052 0.948 22 H 0.063 0.937 23 H 0.060 0.940 24 H 0.053 0.947 25 H 0.062 0.938 26 H 0.052 0.948 27 H -0.001 1.001 28 H -0.003 1.003 29 H 0.259 0.741 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.115 0.885 33 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.859 9.013 1.396 10.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.103 4.103 3 C -0.197 4.197 4 C -0.066 4.066 5 H 0.075 0.925 6 C 0.000 4.000 7 C -0.548 4.548 8 H 0.079 0.921 9 C -0.192 4.192 10 N -0.574 5.574 11 Si 0.771 3.229 12 H -0.193 1.193 13 H -0.216 1.216 14 H -0.197 1.197 15 C -0.117 4.117 16 H 0.117 0.883 17 C -0.180 4.180 18 C -0.206 4.206 19 S -0.137 6.137 20 H 0.059 0.941 21 H 0.071 0.929 22 H 0.082 0.918 23 H 0.079 0.921 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.017 0.983 28 H 0.015 0.985 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.134 0.866 33 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.639 10.205 1.370 11.293 hybrid contribution 0.309 -2.079 -0.594 2.184 sum 4.948 8.126 0.776 9.545 Atomic orbital electron populations 1.21722 0.95128 1.01010 1.01396 1.21025 0.96090 0.95332 0.97811 1.21870 1.00693 0.95644 1.01505 1.21045 0.90942 0.97201 0.97444 0.92467 1.19000 0.95049 0.90235 0.95705 1.21463 1.31884 0.92964 1.08466 0.92081 1.25752 0.96046 0.98613 0.98773 1.70077 1.42212 1.07500 1.37583 0.85796 0.79291 0.77250 0.80514 1.19349 1.21608 1.19673 1.24273 0.98908 0.88883 0.99636 0.88347 1.23523 0.97064 1.00467 0.96961 1.24766 0.98744 0.93343 1.03735 1.88305 1.48702 1.20279 1.56438 0.94129 0.92886 0.91827 0.92117 0.92836 0.91911 0.92928 0.98265 0.98505 0.93222 0.89979 0.91341 0.86650 0.85821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.64 8.73 71.98 0.63 -4.01 16 2 C -0.08 -3.04 2.33 -10.80 -0.03 -3.07 16 3 C -0.14 -4.33 8.09 71.98 0.58 -3.74 16 4 C -0.05 -1.82 1.57 -10.79 -0.02 -1.84 16 5 H 0.06 2.22 8.09 -2.38 -0.02 2.20 16 6 C 0.04 1.90 4.35 29.85 0.13 2.03 16 7 C -0.51 -26.59 7.74 25.60 0.20 -26.39 16 8 H 0.06 3.08 5.87 -2.91 -0.02 3.06 16 9 C 0.01 0.30 5.46 84.65 0.46 0.77 16 10 N -0.93 -54.70 13.29 21.45 0.28 -54.41 16 11 Si 0.95 42.93 29.54 68.60 2.03 44.96 16 12 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 13 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 14 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 15 C 0.01 0.40 2.62 31.59 0.08 0.49 16 16 H 0.10 3.81 7.27 -2.39 -0.02 3.80 16 17 C -0.14 -4.66 5.83 32.59 0.19 -4.47 16 18 C -0.06 -1.50 9.09 72.98 0.66 -0.84 16 19 S -0.36 -11.57 20.88 -56.49 -1.18 -12.75 16 20 H 0.04 1.59 6.80 -2.38 -0.02 1.57 16 21 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 22 H 0.06 1.86 8.14 -2.38 -0.02 1.85 16 23 H 0.06 2.42 6.57 -2.38 -0.02 2.41 16 24 H 0.05 1.72 5.53 -2.68 -0.01 1.71 16 25 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 26 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 27 H 0.00 -0.05 6.55 -2.39 -0.02 -0.06 16 28 H 0.00 -0.18 7.61 -2.39 -0.02 -0.20 16 29 H 0.26 14.54 8.31 -92.70 -0.77 13.77 16 30 H 0.08 2.79 7.95 -2.39 -0.02 2.77 16 31 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 Total: -1.00 -57.82 268.36 5.09 -52.73 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: 1.06 Total: 10.53 kcal Atomic # 6 Polarization: -43.96 SS G_CDS: 2.89 Total: -41.07 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: 0.28 Total: -54.41 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 16 Polarization: -11.57 SS G_CDS: -1.18 Total: -12.75 kcal Total: -57.82 5.09 -52.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260525476.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.230 kcal (2) G-P(sol) polarization free energy of solvation -57.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds