Wall clock time and date at job start Mon Mar 30 2020 02:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47158 * 2 1 4 4 C 1.52994 * 109.47384 * 239.99861 * 2 1 3 5 5 C 1.50697 * 109.47176 * 65.00165 * 4 2 1 6 6 H 1.07999 * 119.99955 * 359.97438 * 5 4 2 7 7 C 1.37887 * 119.99929 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99938 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99830 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47057 * 89.99486 * 9 7 5 11 11 H 1.48490 * 109.47019 * 209.99708 * 9 7 5 12 12 H 1.48500 * 109.47166 * 329.99690 * 9 7 5 13 13 C 1.53002 * 109.46827 * 119.99753 * 2 1 3 14 14 H 1.09003 * 109.38799 * 59.80220 * 13 2 1 15 15 C 1.52581 * 109.39102 * 300.00234 * 13 2 1 16 16 C 1.52577 * 110.69350 * 169.29574 * 15 13 2 17 17 C 1.53019 * 110.00025 * 70.70304 * 16 15 13 18 18 S 1.81758 * 108.81260 * 296.94234 * 17 16 15 19 19 C 1.53101 * 109.30888 * 179.55618 * 13 2 1 20 20 H 1.08992 * 109.47900 * 300.00309 * 1 2 3 21 21 H 1.09003 * 109.46736 * 60.00891 * 1 2 3 22 22 H 1.09001 * 109.47158 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47189 * 185.00686 * 4 2 1 24 24 H 1.09001 * 109.47452 * 305.00023 * 4 2 1 25 25 H 0.97005 * 120.00060 * 180.02562 * 8 7 5 26 26 H 1.09002 * 109.22622 * 289.59680 * 15 13 2 27 27 H 1.09000 * 109.22338 * 48.99821 * 15 13 2 28 28 H 1.08996 * 109.39475 * 190.80440 * 16 15 13 29 29 H 1.09005 * 109.38925 * 310.50514 * 16 15 13 30 30 H 1.08996 * 109.59306 * 177.14309 * 17 16 15 31 31 H 1.08999 * 109.69884 * 56.79606 * 17 16 15 32 32 H 1.08995 * 109.57507 * 302.92573 * 19 13 2 33 33 H 1.08997 * 109.57554 * 63.19077 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6414 0.0570 -2.4765 6 1 1.0801 0.9741 -2.3757 7 6 1.9926 -0.4024 -3.7283 8 7 2.6757 -1.5194 -3.8511 9 14 1.4991 0.5628 -5.2497 10 1 2.5651 1.5416 -5.5823 11 1 1.3114 -0.3710 -6.3889 12 1 0.2284 1.2850 -4.9871 13 6 2.0399 -0.7212 1.2493 14 1 1.6729 -1.7476 1.2497 15 6 1.5302 -0.0005 2.4938 16 6 1.7941 -0.8329 3.7450 17 6 3.2928 -0.8543 4.0529 18 16 4.1619 -1.6679 2.6795 19 6 3.5709 -0.7288 1.2400 20 1 -0.3634 0.5138 0.8898 21 1 -0.3633 0.5137 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 3.1264 -0.7995 -1.2054 24 1 1.6055 -1.7198 -1.2951 25 1 2.9231 -1.8424 -4.7317 26 1 2.0395 0.9588 2.5869 27 1 0.4582 0.1703 2.3959 28 1 1.2586 -0.3978 4.5888 29 1 1.4432 -1.8520 3.5823 30 1 3.4686 -1.4078 4.9753 31 1 3.6598 0.1661 4.1637 32 1 3.9282 -1.2004 0.3247 33 1 3.9415 0.2949 1.2923 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260543674.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:11 Heat of formation + Delta-G solvation = -53.326583 kcal Electronic energy + Delta-G solvation = -12765.287315 eV Core-core repulsion = 10721.977523 eV Total energy + Delta-G solvation = -2043.309793 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.31435 -35.78104 -34.13604 -31.28263 -29.44052 -27.62033 -25.48840 -23.93254 -21.74988 -20.52852 -18.54291 -17.47182 -16.57819 -16.21198 -15.72353 -14.92661 -14.66089 -14.54362 -14.21834 -14.11408 -13.70060 -13.23255 -12.87838 -12.75588 -12.55969 -12.47568 -12.25632 -11.98296 -11.83722 -11.55379 -11.40381 -11.09414 -10.63402 -10.53234 -10.41572 -8.67404 -8.16879 -6.26046 0.87390 1.39488 1.40199 1.51009 1.64665 2.41751 3.16417 3.74175 3.79847 3.98386 4.06345 4.28013 4.33362 4.47394 4.58784 4.69020 4.75348 4.78960 4.87779 5.00702 5.10147 5.12222 5.20522 5.26609 5.42449 5.46757 5.52534 5.61384 5.85052 5.90947 6.30624 6.91067 7.42209 8.94767 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.050333 B = 0.007341 C = 0.006654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.165923 B = 3813.072115 C = 4207.129548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.071 4.071 3 H 0.056 0.944 4 C 0.031 3.969 5 C -0.530 4.530 6 H 0.061 0.939 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.959 3.041 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.262 1.262 13 C -0.073 4.073 14 H 0.061 0.939 15 C -0.123 4.123 16 C -0.116 4.116 17 C -0.067 4.067 18 S -0.326 6.326 19 C -0.062 4.062 20 H 0.073 0.927 21 H 0.043 0.957 22 H 0.039 0.961 23 H -0.005 1.005 24 H -0.017 1.017 25 H 0.261 0.739 26 H 0.067 0.933 27 H 0.086 0.914 28 H 0.101 0.899 29 H 0.066 0.934 30 H 0.119 0.881 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.358 3.799 15.140 15.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.092 4.092 3 H 0.074 0.926 4 C -0.006 4.006 5 C -0.568 4.568 6 H 0.080 0.920 7 C -0.200 4.200 8 N -0.576 5.576 9 Si 0.784 3.216 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.186 1.186 13 C -0.094 4.094 14 H 0.079 0.921 15 C -0.160 4.160 16 C -0.155 4.155 17 C -0.215 4.215 18 S -0.099 6.099 19 C -0.210 4.210 20 H 0.092 0.908 21 H 0.062 0.938 22 H 0.058 0.942 23 H 0.013 0.987 24 H 0.002 0.998 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.104 0.896 28 H 0.119 0.881 29 H 0.085 0.915 30 H 0.137 0.863 31 H 0.110 0.890 32 H 0.099 0.901 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.533 2.821 15.081 15.419 hybrid contribution -0.574 0.954 -1.480 1.852 sum -2.108 3.775 13.601 14.272 Atomic orbital electron populations 1.21719 0.94778 1.00873 1.01188 1.21078 0.96268 0.98440 0.93374 0.92552 1.19097 0.94582 0.94254 0.92659 1.21700 1.34336 1.08554 0.92199 0.92047 1.25948 0.95353 0.96042 1.02649 1.70108 1.40386 1.22954 1.24193 0.85539 0.79035 0.78388 0.78665 1.19984 1.21095 1.18630 1.21299 0.92251 1.00015 0.95789 0.92084 1.21660 1.02835 0.98747 0.92748 1.21690 0.94004 1.01347 0.98443 1.23524 0.97487 1.03532 0.96910 1.86910 1.64478 1.52538 1.05933 1.23497 0.99195 1.01726 0.96551 0.90831 0.93814 0.94158 0.98710 0.99820 0.93043 0.91443 0.89551 0.88094 0.91491 0.86277 0.88963 0.90095 0.89854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.52 8.67 71.98 0.62 -3.90 16 2 C -0.07 -2.80 1.92 -10.80 -0.02 -2.82 16 3 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 4 C 0.03 1.62 4.23 29.84 0.13 1.74 16 5 C -0.53 -29.80 8.41 25.60 0.22 -29.59 16 6 H 0.06 3.30 7.06 -2.91 -0.02 3.28 16 7 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 8 N -0.94 -57.75 13.29 21.45 0.28 -57.46 16 9 Si 0.96 44.60 29.54 68.60 2.03 46.63 16 10 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 12 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 13 C -0.07 -2.41 1.63 -10.90 -0.02 -2.43 16 14 H 0.06 2.19 8.06 -2.39 -0.02 2.17 16 15 C -0.12 -2.93 4.82 30.31 0.15 -2.79 16 16 C -0.12 -2.27 5.74 30.46 0.17 -2.10 16 17 C -0.07 -1.37 6.46 71.99 0.46 -0.91 16 18 S -0.33 -9.89 22.33 -56.49 -1.26 -11.15 16 19 C -0.06 -2.12 5.45 72.02 0.39 -1.73 16 20 H 0.07 2.02 6.19 -2.39 -0.01 2.00 16 21 H 0.04 1.68 6.95 -2.39 -0.02 1.67 16 22 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 23 H -0.01 -0.30 6.09 -2.39 -0.01 -0.31 16 24 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 25 H 0.26 15.21 8.31 -92.70 -0.77 14.44 16 26 H 0.07 1.53 8.08 -2.39 -0.02 1.51 16 27 H 0.09 1.90 5.88 -2.39 -0.01 1.89 16 28 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.07 1.45 8.06 -2.38 -0.02 1.43 16 30 H 0.12 1.97 8.14 -2.39 -0.02 1.96 16 31 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.08 3.35 6.15 -2.39 -0.01 3.34 16 33 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 Total: -1.00 -64.07 267.07 4.68 -59.39 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: 1.06 Total: 6.81 kcal Atomic # 6 Polarization: -46.78 SS G_CDS: 2.57 Total: -44.21 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: 0.28 Total: -57.46 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Atomic # 16 Polarization: -9.89 SS G_CDS: -1.26 Total: -11.15 kcal Total: -64.07 4.68 -59.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260543674.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.065 kcal (2) G-P(sol) polarization free energy of solvation -64.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds