Wall clock time and date at job start Mon Mar 30 2020 02:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46731 * 2 1 4 4 C 1.52997 * 109.47242 * 119.99706 * 2 1 3 5 5 C 1.50701 * 109.47212 * 295.00231 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47094 * 90.00289 * 9 7 5 11 11 H 1.48505 * 109.47195 * 210.00171 * 9 7 5 12 12 H 1.48493 * 109.47449 * 330.00136 * 9 7 5 13 13 C 1.52994 * 109.47368 * 240.00275 * 2 1 3 14 14 H 1.09007 * 109.38915 * 299.79645 * 13 2 1 15 15 C 1.52587 * 109.39491 * 59.49944 * 13 2 1 16 16 C 1.52574 * 110.72977 * 190.82860 * 15 13 2 17 17 C 1.53101 * 109.95333 * 289.32470 * 16 15 13 18 18 S 1.81740 * 108.84168 * 63.02593 * 17 16 15 19 19 C 1.53096 * 109.39378 * 179.97438 * 13 2 1 20 20 H 1.08998 * 109.47430 * 299.99947 * 1 2 3 21 21 H 1.08996 * 109.47271 * 60.00619 * 1 2 3 22 22 H 1.09008 * 109.46731 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47153 * 175.00232 * 4 2 1 24 24 H 1.09001 * 109.46832 * 55.00423 * 4 2 1 25 25 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 26 26 H 1.08998 * 109.22232 * 311.15033 * 15 13 2 27 27 H 1.09000 * 109.22047 * 70.50280 * 15 13 2 28 28 H 1.09000 * 109.39138 * 169.18147 * 16 15 13 29 29 H 1.09000 * 109.39418 * 49.47235 * 16 15 13 30 30 H 1.09004 * 109.57620 * 303.21510 * 17 16 15 31 31 H 1.09003 * 109.57587 * 182.83515 * 17 16 15 32 32 H 1.09006 * 109.57273 * 296.62993 * 19 13 2 33 33 H 1.08996 * 109.57294 * 57.01533 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0571 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9924 -0.4021 3.7283 8 7 2.6756 -1.5191 3.8512 9 14 1.4976 0.5623 5.2497 10 1 0.1702 0.0937 5.7227 11 1 2.5065 0.3521 6.3189 12 1 1.4226 2.0075 4.9170 13 6 2.0401 -0.7211 -1.2492 14 1 1.6790 -1.7497 -1.2461 15 6 1.5203 -0.0077 -2.4938 16 6 1.7820 -0.8427 -3.7438 17 6 3.2802 -0.8569 -4.0583 18 16 4.1604 -1.6608 -2.6864 19 6 3.5710 -0.7195 -1.2477 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0278 -0.0005 23 1 3.1264 -0.7993 1.2056 24 1 1.6054 -1.7197 1.2951 25 1 2.9229 -1.8420 4.7318 26 1 0.4479 0.1580 -2.3909 27 1 2.0236 0.9540 -2.5927 28 1 1.2395 -0.4132 -4.5860 29 1 1.4377 -1.8632 -3.5760 30 1 3.6391 0.1660 -4.1731 31 1 3.4547 -1.4126 -4.9797 32 1 3.9352 0.3062 -1.3078 33 1 3.9357 -1.1855 -0.3323 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260543675.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:13 Heat of formation + Delta-G solvation = -38.085861 kcal Electronic energy + Delta-G solvation = -12763.696072 eV Core-core repulsion = 10721.047167 eV Total energy + Delta-G solvation = -2042.648906 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -37.93168 -34.24198 -32.28133 -29.83460 -27.80997 -26.18270 -23.69291 -22.55554 -20.47597 -18.97342 -16.59543 -16.07446 -15.00838 -14.68419 -14.35388 -13.41864 -13.27609 -13.07126 -12.97310 -12.85271 -11.94774 -11.49749 -11.35032 -11.19040 -11.10077 -10.90167 -10.73508 -10.49856 -10.27580 -10.16890 -9.68681 -9.39690 -9.00713 -8.88476 -8.32697 -7.43622 -5.98525 -4.00010 2.05060 2.81910 3.31894 3.38623 3.41283 4.46459 4.81581 4.90530 5.11036 5.22962 5.36813 5.42345 5.54960 5.67501 5.79873 5.92729 5.94503 6.08303 6.17225 6.24862 6.33400 6.39974 6.55540 6.61433 6.99094 7.08414 7.16827 7.68159 7.83120 8.01201 8.44664 9.06273 9.63493 11.12676 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.050377 B = 0.007336 C = 0.006650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.674010 B = 3816.026551 C = 4209.425478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.079 4.079 3 H 0.056 0.944 4 C 0.026 3.974 5 C -0.516 4.516 6 H 0.055 0.945 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.888 3.112 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.275 1.275 13 C -0.082 4.082 14 H 0.076 0.924 15 C -0.128 4.128 16 C -0.121 4.121 17 C -0.079 4.079 18 S -0.291 6.291 19 C -0.066 4.066 20 H 0.061 0.939 21 H 0.034 0.966 22 H 0.045 0.955 23 H 0.019 0.981 24 H 0.016 0.984 25 H 0.260 0.740 26 H 0.075 0.925 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.234 2.213 -13.413 13.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.099 4.099 3 H 0.074 0.926 4 C -0.011 4.011 5 C -0.554 4.554 6 H 0.073 0.927 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.716 3.284 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.200 1.200 13 C -0.102 4.102 14 H 0.095 0.905 15 C -0.166 4.166 16 C -0.159 4.159 17 C -0.228 4.228 18 S -0.064 6.064 19 C -0.213 4.213 20 H 0.080 0.920 21 H 0.053 0.947 22 H 0.064 0.936 23 H 0.037 0.963 24 H 0.034 0.966 25 H 0.069 0.931 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.114 0.886 32 H 0.096 0.904 33 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.389 1.233 -13.342 13.404 hybrid contribution -0.982 1.463 0.995 2.024 sum -1.371 2.696 -12.346 12.712 Atomic orbital electron populations 1.21783 0.96222 1.00903 1.00206 1.21231 0.95119 0.99072 0.94478 0.92574 1.19210 0.96155 0.95490 0.90263 1.21251 1.34762 1.08327 0.91090 0.92669 1.25013 0.95308 0.95073 0.99067 1.69961 1.38907 1.21176 1.23409 0.86652 0.78246 0.80410 0.83043 1.20740 1.21282 1.19958 1.21420 0.92582 1.00868 0.95316 0.90514 1.21710 1.02366 0.98616 0.93893 1.21727 0.94058 1.01800 0.98353 1.23382 0.97860 1.03010 0.98517 1.86800 1.62753 1.52055 1.04753 1.23704 0.98904 1.01678 0.97050 0.91960 0.94708 0.93608 0.96334 0.96552 0.93056 0.90619 0.92343 0.91545 0.90796 0.90372 0.88557 0.90382 0.86432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 8.66 37.16 0.32 -2.11 16 2 C -0.08 -1.54 1.92 -90.62 -0.17 -1.71 16 3 H 0.06 1.12 8.14 -51.92 -0.42 0.69 16 4 C 0.03 0.64 4.24 -27.88 -0.12 0.52 16 5 C -0.52 -14.22 8.41 -34.44 -0.29 -14.51 16 6 H 0.06 1.48 7.06 -52.49 -0.37 1.11 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -26.75 13.29 55.43 0.74 -26.02 16 9 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 C -0.08 -1.36 1.63 -90.79 -0.15 -1.51 16 14 H 0.08 1.36 8.05 -51.92 -0.42 0.94 16 15 C -0.13 -1.74 4.82 -27.16 -0.13 -1.87 16 16 C -0.12 -1.41 5.75 -26.90 -0.15 -1.57 16 17 C -0.08 -0.95 6.45 37.21 0.24 -0.71 16 18 S -0.29 -4.50 22.33 -107.50 -2.40 -6.90 16 19 C -0.07 -1.11 5.46 37.21 0.20 -0.90 16 20 H 0.06 1.22 6.95 -51.93 -0.36 0.86 16 21 H 0.03 0.53 6.18 -51.93 -0.32 0.21 16 22 H 0.04 0.83 8.14 -51.92 -0.42 0.40 16 23 H 0.02 0.49 6.11 -51.93 -0.32 0.17 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 26 H 0.08 0.99 5.85 -51.93 -0.30 0.69 16 27 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.91 8.05 -51.93 -0.42 0.49 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.08 1.26 8.14 -51.92 -0.42 0.84 16 33 H 0.12 2.25 6.17 -51.93 -0.32 1.93 16 LS Contribution 267.08 15.07 4.02 4.02 Total: -1.00 -28.87 267.08 -8.35 -37.22 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -5.34 Total: -2.01 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: -0.35 Total: -22.86 kcal Atomic # 7 Polarization: -26.75 SS G_CDS: 0.74 Total: -26.02 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -4.50 SS G_CDS: -2.40 Total: -6.90 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -28.87 -8.35 -37.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260543675.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.864 kcal (2) G-P(sol) polarization free energy of solvation -28.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds