Wall clock time and date at job start Mon Mar 30 2020 02:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 C 1.50697 * 109.47463 * 295.00146 * 4 2 1 6 6 H 1.08007 * 119.99713 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00558 * 179.97438 * 5 4 2 8 8 N 1.31509 * 119.99821 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00224 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46887 * 59.99783 * 9 7 5 11 11 H 1.48492 * 109.47137 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47042 * 300.00308 * 9 7 5 13 13 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 14 14 H 1.09004 * 109.38657 * 299.79996 * 13 2 1 15 15 C 1.52583 * 109.38947 * 179.97438 * 13 2 1 16 16 C 1.52579 * 110.72719 * 169.17438 * 15 13 2 17 17 C 1.53101 * 109.95741 * 70.67319 * 16 15 13 18 18 S 1.81754 * 108.83889 * 296.97687 * 17 16 15 19 19 C 1.53093 * 109.39239 * 59.50230 * 13 2 1 20 20 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 21 21 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 23 23 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 24 24 H 1.09006 * 109.47717 * 174.99599 * 4 2 1 25 25 H 0.97002 * 120.00259 * 179.97438 * 8 7 5 26 26 H 1.09002 * 109.22657 * 289.49731 * 15 13 2 27 27 H 1.08999 * 109.22609 * 48.89610 * 15 13 2 28 28 H 1.09000 * 109.39151 * 190.82340 * 16 15 13 29 29 H 1.09006 * 109.38704 * 310.62734 * 16 15 13 30 30 H 1.08997 * 109.57337 * 56.78452 * 17 16 15 31 31 H 1.08998 * 109.57745 * 177.03994 * 17 16 15 32 32 H 1.09002 * 109.57859 * 302.98791 * 19 13 2 33 33 H 1.09006 * 109.57822 * 63.36743 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 1.6414 0.0569 2.4765 6 1 1.0800 0.9741 2.3757 7 6 1.9925 -0.4024 3.7283 8 7 2.6757 -1.5193 3.8511 9 14 1.4989 0.5627 5.2497 10 1 0.0190 0.6703 5.3090 11 1 1.9928 -0.1380 6.4621 12 1 2.0920 1.9227 5.1871 13 6 2.0400 -0.7212 -1.2494 14 1 1.6788 -1.7496 -1.2463 15 6 3.5658 -0.7195 -1.2478 16 6 4.1079 -1.6519 -2.3270 17 6 3.8482 -1.0544 -3.7125 18 16 2.0535 -0.9276 -3.9699 19 6 1.5185 -0.0053 -2.4980 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 -0.8900 23 1 1.6055 -1.7198 1.2950 24 1 3.1264 -0.7995 1.2055 25 1 2.9230 -1.8423 4.7317 26 1 3.9239 0.2928 -1.4351 27 1 3.9241 -1.0524 -0.2737 28 1 5.1805 -1.7845 -2.1854 29 1 3.6108 -2.6192 -2.2527 30 1 4.2968 -0.0629 -3.7725 31 1 4.2839 -1.6991 -4.4758 32 1 0.4296 0.0347 -2.4682 33 1 1.9220 1.0067 -2.5342 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260543678.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:14 Heat of formation + Delta-G solvation = -52.906858 kcal Electronic energy + Delta-G solvation = -12776.841990 eV Core-core repulsion = 10733.550397 eV Total energy + Delta-G solvation = -2043.291592 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.32207 -35.72005 -34.26097 -31.32068 -29.09729 -27.85143 -25.71860 -23.58667 -21.90436 -20.52899 -18.51956 -17.54126 -16.56702 -16.08822 -15.80545 -14.82944 -14.74009 -14.48017 -14.21996 -14.20494 -13.69776 -13.25534 -12.91697 -12.68528 -12.62111 -12.46172 -12.23981 -12.14681 -11.78345 -11.43744 -11.36235 -11.14748 -10.77800 -10.50173 -10.36709 -8.63873 -8.16015 -6.24778 0.89812 1.39982 1.42017 1.49669 1.62240 2.42439 3.17084 3.72372 3.79118 3.96159 4.03981 4.26788 4.33888 4.46635 4.56385 4.65834 4.70123 4.78379 4.83044 5.03737 5.05301 5.11561 5.20731 5.27603 5.40667 5.44599 5.50394 5.63274 5.88028 5.91994 6.31965 6.91837 7.43068 8.95199 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.055461 B = 0.007088 C = 0.006528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.733621 B = 3949.432242 C = 4288.051433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.071 4.071 3 H 0.056 0.944 4 C 0.034 3.966 5 C -0.532 4.532 6 H 0.059 0.941 7 C -0.001 4.001 8 N -0.934 5.934 9 Si 0.957 3.043 10 H -0.269 1.269 11 H -0.286 1.286 12 H -0.268 1.268 13 C -0.073 4.073 14 H 0.061 0.939 15 C -0.128 4.128 16 C -0.116 4.116 17 C -0.067 4.067 18 S -0.310 6.310 19 C -0.061 4.061 20 H 0.044 0.956 21 H 0.039 0.961 22 H 0.067 0.933 23 H -0.017 1.017 24 H 0.002 0.998 25 H 0.261 0.739 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.087 0.913 29 H 0.064 0.936 30 H 0.092 0.908 31 H 0.119 0.881 32 H 0.110 0.890 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.900 2.605 -13.188 13.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.091 4.091 3 H 0.074 0.926 4 C -0.003 4.003 5 C -0.570 4.570 6 H 0.078 0.922 7 C -0.198 4.198 8 N -0.575 5.575 9 Si 0.782 3.218 10 H -0.194 1.194 11 H -0.211 1.211 12 H -0.193 1.193 13 C -0.093 4.093 14 H 0.080 0.920 15 C -0.166 4.166 16 C -0.155 4.155 17 C -0.215 4.215 18 S -0.082 6.082 19 C -0.209 4.209 20 H 0.063 0.937 21 H 0.059 0.941 22 H 0.086 0.914 23 H 0.002 0.998 24 H 0.020 0.980 25 H 0.070 0.930 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.105 0.895 29 H 0.083 0.917 30 H 0.110 0.890 31 H 0.137 0.863 32 H 0.128 0.872 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.357 2.108 -13.967 14.130 hybrid contribution 0.555 0.562 2.196 2.334 sum 0.912 2.670 -11.771 12.104 Atomic orbital electron populations 1.21734 0.95238 1.00835 1.01027 1.21067 0.95932 0.98564 0.93581 0.92553 1.19081 0.94957 0.94099 0.92209 1.21677 1.34393 1.08598 0.92297 0.92236 1.25904 0.95346 0.96050 1.02495 1.70086 1.40294 1.22877 1.24238 0.85626 0.78876 0.78865 0.78451 1.19385 1.21120 1.19269 1.21261 0.95568 0.99195 0.93309 0.92047 1.21640 0.95066 1.00276 0.99598 1.21679 1.02271 0.98912 0.92623 1.23471 0.92015 1.05340 1.00659 1.86736 1.11251 1.76420 1.33822 1.23547 1.04616 1.00278 0.92469 0.93666 0.94140 0.91388 0.99828 0.98022 0.93018 0.91620 0.92390 0.89455 0.91678 0.88958 0.86304 0.87206 0.89293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.72 8.64 71.98 0.62 -4.10 16 2 C -0.07 -2.79 1.92 -10.79 -0.02 -2.81 16 3 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 4 C 0.03 1.72 4.25 29.84 0.13 1.84 16 5 C -0.53 -29.67 8.41 25.60 0.22 -29.46 16 6 H 0.06 3.19 7.06 -2.91 -0.02 3.17 16 7 C 0.00 -0.04 5.46 84.66 0.46 0.43 16 8 N -0.93 -56.77 13.29 21.45 0.28 -56.48 16 9 Si 0.96 44.23 29.54 68.60 2.03 46.25 16 10 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 11 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 12 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 13 C -0.07 -2.40 1.63 -10.90 -0.02 -2.42 16 14 H 0.06 2.20 8.05 -2.39 -0.02 2.18 16 15 C -0.13 -4.00 4.83 30.32 0.15 -3.85 16 16 C -0.12 -2.89 5.75 30.49 0.18 -2.71 16 17 C -0.07 -1.44 6.46 72.02 0.46 -0.97 16 18 S -0.31 -8.08 22.33 -56.49 -1.26 -9.34 16 19 C -0.06 -1.66 5.45 72.01 0.39 -1.27 16 20 H 0.04 1.76 6.95 -2.39 -0.02 1.75 16 21 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 22 H 0.07 1.96 6.35 -2.38 -0.02 1.94 16 23 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 24 H 0.00 0.09 5.95 -2.38 -0.01 0.07 16 25 H 0.26 15.03 8.31 -92.71 -0.77 14.25 16 26 H 0.07 1.91 8.08 -2.39 -0.02 1.89 16 27 H 0.06 2.18 5.78 -2.39 -0.01 2.17 16 28 H 0.09 1.88 8.14 -2.39 -0.02 1.87 16 29 H 0.06 1.75 8.05 -2.38 -0.02 1.73 16 30 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.11 2.85 6.26 -2.39 -0.01 2.83 16 33 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 Total: -1.00 -61.75 267.10 4.68 -57.07 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: 1.06 Total: 7.83 kcal Atomic # 6 Polarization: -47.89 SS G_CDS: 2.57 Total: -45.32 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: 0.28 Total: -56.48 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 16 Polarization: -8.08 SS G_CDS: -1.26 Total: -9.34 kcal Total: -61.75 4.68 -57.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260543678.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.162 kcal (2) G-P(sol) polarization free energy of solvation -61.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds