Wall clock time and date at job start Mon Mar 30 2020 02:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46866 * 2 1 4 4 C 1.52997 * 109.47131 * 240.00371 * 2 1 3 5 5 C 1.50694 * 109.47460 * 64.99697 * 4 2 1 6 6 H 1.08002 * 120.00179 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00472 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99350 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00608 * 179.97438 * 7 5 4 10 10 H 1.48490 * 109.47339 * 179.97438 * 9 7 5 11 11 H 1.48493 * 109.47239 * 300.00306 * 9 7 5 12 12 H 1.48504 * 109.46636 * 59.99865 * 9 7 5 13 13 C 1.52999 * 109.47141 * 119.99929 * 2 1 3 14 14 H 1.08995 * 109.38875 * 59.80236 * 13 2 1 15 15 C 1.52579 * 109.38686 * 179.50500 * 13 2 1 16 16 C 1.52587 * 110.72557 * 190.82333 * 15 13 2 17 17 C 1.53096 * 109.95528 * 289.32680 * 16 15 13 18 18 S 1.81751 * 108.84065 * 63.02552 * 17 16 15 19 19 C 1.53089 * 109.39023 * 299.99930 * 13 2 1 20 20 H 1.09008 * 109.47372 * 300.00032 * 1 2 3 21 21 H 1.09003 * 109.47550 * 59.99782 * 1 2 3 22 22 H 1.08992 * 109.47274 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46800 * 305.00168 * 4 2 1 24 24 H 1.08998 * 109.47382 * 184.99967 * 4 2 1 25 25 H 0.97005 * 119.99661 * 179.97438 * 8 7 5 26 26 H 1.09002 * 109.22963 * 311.14586 * 15 13 2 27 27 H 1.09003 * 109.23107 * 70.50409 * 15 13 2 28 28 H 1.09000 * 109.39214 * 169.17364 * 16 15 13 29 29 H 1.09003 * 109.30482 * 49.42483 * 16 15 13 30 30 H 1.08992 * 109.57655 * 303.21397 * 17 16 15 31 31 H 1.09004 * 109.57439 * 182.82872 * 17 16 15 32 32 H 1.09006 * 109.58147 * 296.63233 * 19 13 2 33 33 H 1.09005 * 109.57679 * 57.01925 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0799 0.9742 -2.3757 7 6 1.9923 -0.4021 -3.7284 8 7 2.6755 -1.5191 -3.8512 9 14 1.4975 0.5622 -5.2498 10 1 1.9926 -0.1377 -6.4622 11 1 0.0176 0.6687 -5.3087 12 1 2.0896 1.9227 -5.1876 13 6 2.0400 -0.7212 1.2492 14 1 1.6730 -1.7476 1.2497 15 6 3.5657 -0.7309 1.2411 16 6 4.1056 -1.6641 2.3208 17 6 3.8563 -1.0606 3.7055 18 16 2.0637 -0.9197 3.9703 19 6 1.5287 0.0019 2.4980 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.6053 -1.7197 -1.2952 24 1 3.1263 -0.7994 -1.2057 25 1 2.9221 -1.8424 -4.7319 26 1 3.9174 -1.0685 0.2662 27 1 3.9321 0.2793 1.4239 28 1 5.1766 -1.8051 2.1750 29 1 3.6008 -2.6276 2.2497 30 1 4.3124 -0.0722 3.7606 31 1 4.2885 -1.7074 4.4691 32 1 1.9395 1.0111 2.5296 33 1 0.4400 0.0494 2.4725 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260543679.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:16 Heat of formation + Delta-G solvation = -38.215635 kcal Electronic energy + Delta-G solvation = -12776.929723 eV Core-core repulsion = 10734.275190 eV Total energy + Delta-G solvation = -2042.654533 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -37.89731 -34.15298 -32.41198 -29.79891 -27.65000 -26.24651 -24.10048 -21.99443 -20.60855 -18.98055 -16.53039 -16.25686 -14.83965 -14.66553 -14.40542 -13.39895 -13.27862 -13.11129 -13.01888 -12.79309 -11.97747 -11.48655 -11.32440 -11.23484 -11.07957 -10.82624 -10.81857 -10.48174 -10.24938 -9.86193 -9.76728 -9.58221 -8.98947 -8.89885 -8.32389 -7.51815 -5.99392 -4.00591 1.97581 2.71205 3.32625 3.37456 3.39638 4.46016 4.89526 4.97900 5.12231 5.23070 5.36093 5.42972 5.52170 5.67292 5.86286 5.91204 5.96909 6.07774 6.17923 6.29234 6.44340 6.53657 6.56221 6.68880 6.99540 7.09033 7.16708 7.68928 7.84069 8.00790 8.44380 9.05525 9.62713 11.11790 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.055439 B = 0.007091 C = 0.006530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.942070 B = 3947.464482 C = 4287.089974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.079 4.079 3 H 0.056 0.944 4 C 0.027 3.973 5 C -0.516 4.516 6 H 0.054 0.946 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.889 3.111 10 H -0.288 1.288 11 H -0.277 1.277 12 H -0.278 1.278 13 C -0.081 4.081 14 H 0.076 0.924 15 C -0.130 4.130 16 C -0.121 4.121 17 C -0.075 4.075 18 S -0.296 6.296 19 C -0.068 4.068 20 H 0.032 0.968 21 H 0.062 0.938 22 H 0.046 0.954 23 H 0.015 0.985 24 H 0.021 0.979 25 H 0.260 0.740 26 H 0.090 0.910 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.023 1.412 12.079 12.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.099 4.099 3 H 0.074 0.926 4 C -0.010 4.010 5 C -0.555 4.555 6 H 0.073 0.927 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.717 3.283 10 H -0.213 1.213 11 H -0.203 1.203 12 H -0.203 1.203 13 C -0.101 4.101 14 H 0.095 0.905 15 C -0.167 4.167 16 C -0.160 4.160 17 C -0.223 4.223 18 S -0.068 6.068 19 C -0.216 4.216 20 H 0.051 0.949 21 H 0.081 0.919 22 H 0.065 0.935 23 H 0.034 0.966 24 H 0.039 0.961 25 H 0.070 0.930 26 H 0.109 0.891 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.115 0.885 32 H 0.096 0.904 33 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.489 0.914 12.849 12.890 hybrid contribution 0.482 0.959 -1.882 2.166 sum 0.971 1.873 10.967 11.168 Atomic orbital electron populations 1.21789 0.96360 1.00952 1.00171 1.21230 0.95014 0.99126 0.94528 0.92582 1.19207 0.96293 0.95390 0.90078 1.21228 1.34776 1.08324 0.91123 0.92732 1.25007 0.95322 0.95068 0.99041 1.69951 1.38974 1.21145 1.23497 0.86710 0.78901 0.80124 0.82579 1.21350 1.20299 1.20332 1.21414 0.95036 1.00164 0.93513 0.90528 1.21707 0.95607 0.99202 1.00206 1.21743 1.01465 1.00037 0.92749 1.23410 0.93695 1.04110 1.01118 1.86643 1.09391 1.76396 1.34402 1.23686 1.04249 1.00108 0.93542 0.94919 0.91921 0.93526 0.96641 0.96058 0.93026 0.89139 0.92506 0.91237 0.90775 0.90278 0.88516 0.90365 0.87771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 8.65 37.16 0.32 -2.17 16 2 C -0.08 -1.54 1.92 -90.62 -0.17 -1.71 16 3 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 4 C 0.03 0.67 4.24 -27.89 -0.12 0.55 16 5 C -0.52 -14.18 8.41 -34.44 -0.29 -14.47 16 6 H 0.05 1.46 7.06 -52.49 -0.37 1.09 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -26.57 13.29 55.43 0.74 -25.84 16 9 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 C -0.08 -1.35 1.63 -90.79 -0.15 -1.50 16 14 H 0.08 1.36 8.05 -51.93 -0.42 0.94 16 15 C -0.13 -2.05 4.82 -27.16 -0.13 -2.18 16 16 C -0.12 -1.61 5.75 -26.89 -0.15 -1.76 16 17 C -0.08 -0.92 6.46 37.21 0.24 -0.68 16 18 S -0.30 -4.21 22.33 -107.50 -2.40 -6.61 16 19 C -0.07 -0.99 5.46 37.20 0.20 -0.79 16 20 H 0.03 0.50 6.36 -51.92 -0.33 0.17 16 21 H 0.06 1.24 6.95 -51.93 -0.36 0.88 16 22 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.02 0.55 5.94 -51.93 -0.31 0.24 16 25 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 26 H 0.09 1.65 5.76 -51.93 -0.30 1.35 16 27 H 0.06 0.86 8.08 -51.93 -0.42 0.44 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 1.03 8.05 -51.93 -0.42 0.61 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.08 1.10 8.14 -51.92 -0.42 0.68 16 33 H 0.10 1.48 6.27 -51.92 -0.33 1.16 16 LS Contribution 267.09 15.07 4.02 4.02 Total: -1.00 -28.57 267.09 -8.35 -36.92 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -5.34 Total: -1.76 kcal Atomic # 6 Polarization: -22.86 SS G_CDS: -0.35 Total: -23.21 kcal Atomic # 7 Polarization: -26.57 SS G_CDS: 0.74 Total: -25.84 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -4.21 SS G_CDS: -2.40 Total: -6.61 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -28.57 -8.35 -36.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260543679.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.297 kcal (2) G-P(sol) polarization free energy of solvation -28.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds