Wall clock time and date at job start Mon Mar 30 2020 02:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46866 * 2 1 4 4 C 1.52997 * 109.47131 * 240.00371 * 2 1 3 5 5 C 1.50694 * 109.47460 * 64.99697 * 4 2 1 6 6 H 1.08002 * 120.00179 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00472 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99350 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00608 * 179.97438 * 7 5 4 10 10 H 1.48490 * 109.47339 * 179.97438 * 9 7 5 11 11 H 1.48493 * 109.47239 * 300.00306 * 9 7 5 12 12 H 1.48504 * 109.46636 * 59.99865 * 9 7 5 13 13 C 1.52999 * 109.47141 * 119.99929 * 2 1 3 14 14 H 1.08995 * 109.38875 * 59.80236 * 13 2 1 15 15 C 1.52579 * 109.38686 * 179.50500 * 13 2 1 16 16 C 1.52587 * 110.72557 * 190.82333 * 15 13 2 17 17 C 1.53096 * 109.95528 * 289.32680 * 16 15 13 18 18 S 1.81751 * 108.84065 * 63.02552 * 17 16 15 19 19 C 1.53089 * 109.39023 * 299.99930 * 13 2 1 20 20 H 1.09008 * 109.47372 * 300.00032 * 1 2 3 21 21 H 1.09003 * 109.47550 * 59.99782 * 1 2 3 22 22 H 1.08992 * 109.47274 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46800 * 305.00168 * 4 2 1 24 24 H 1.08998 * 109.47382 * 184.99967 * 4 2 1 25 25 H 0.97005 * 119.99661 * 179.97438 * 8 7 5 26 26 H 1.09002 * 109.22963 * 311.14586 * 15 13 2 27 27 H 1.09003 * 109.23107 * 70.50409 * 15 13 2 28 28 H 1.09000 * 109.39214 * 169.17364 * 16 15 13 29 29 H 1.09003 * 109.30482 * 49.42483 * 16 15 13 30 30 H 1.08992 * 109.57655 * 303.21397 * 17 16 15 31 31 H 1.09004 * 109.57439 * 182.82872 * 17 16 15 32 32 H 1.09006 * 109.58147 * 296.63233 * 19 13 2 33 33 H 1.09005 * 109.57679 * 57.01925 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0799 0.9742 -2.3757 7 6 1.9923 -0.4021 -3.7284 8 7 2.6755 -1.5191 -3.8512 9 14 1.4975 0.5622 -5.2498 10 1 1.9926 -0.1377 -6.4622 11 1 0.0176 0.6687 -5.3087 12 1 2.0896 1.9227 -5.1876 13 6 2.0400 -0.7212 1.2492 14 1 1.6730 -1.7476 1.2497 15 6 3.5657 -0.7309 1.2411 16 6 4.1056 -1.6641 2.3208 17 6 3.8563 -1.0606 3.7055 18 16 2.0637 -0.9197 3.9703 19 6 1.5287 0.0019 2.4980 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.6053 -1.7197 -1.2952 24 1 3.1263 -0.7994 -1.2057 25 1 2.9221 -1.8424 -4.7319 26 1 3.9174 -1.0685 0.2662 27 1 3.9321 0.2793 1.4239 28 1 5.1766 -1.8051 2.1750 29 1 3.6008 -2.6276 2.2497 30 1 4.3124 -0.0722 3.7606 31 1 4.2885 -1.7074 4.4691 32 1 1.9395 1.0111 2.5296 33 1 0.4400 0.0494 2.4725 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260543679.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:15 Heat of formation + Delta-G solvation = -52.855280 kcal Electronic energy + Delta-G solvation = -12777.564546 eV Core-core repulsion = 10734.275190 eV Total energy + Delta-G solvation = -2043.289356 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.32360 -35.71835 -34.25966 -31.32146 -29.09882 -27.85276 -25.71582 -23.58654 -21.90719 -20.52864 -18.52043 -17.53908 -16.56668 -16.08847 -15.80537 -14.83240 -14.73860 -14.48022 -14.22140 -14.20325 -13.69851 -13.25456 -12.91620 -12.68698 -12.62026 -12.46371 -12.24087 -12.14806 -11.78292 -11.43421 -11.36083 -11.14916 -10.77750 -10.50101 -10.36592 -8.63883 -8.16044 -6.24760 0.89805 1.39996 1.42009 1.49664 1.62214 2.42444 3.17072 3.72332 3.79130 3.96213 4.04013 4.26821 4.33920 4.46659 4.56310 4.65844 4.70123 4.78343 4.82957 5.03817 5.05320 5.11551 5.20741 5.27717 5.40691 5.44584 5.50402 5.63343 5.88076 5.92008 6.31999 6.91868 7.43063 8.95169 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.055439 B = 0.007091 C = 0.006530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.942070 B = 3947.464482 C = 4287.089974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.071 4.071 3 H 0.056 0.944 4 C 0.033 3.967 5 C -0.532 4.532 6 H 0.059 0.941 7 C -0.001 4.001 8 N -0.934 5.934 9 Si 0.957 3.043 10 H -0.286 1.286 11 H -0.269 1.269 12 H -0.268 1.268 13 C -0.073 4.073 14 H 0.061 0.939 15 C -0.129 4.129 16 C -0.116 4.116 17 C -0.067 4.067 18 S -0.310 6.310 19 C -0.061 4.061 20 H 0.067 0.933 21 H 0.044 0.956 22 H 0.039 0.961 23 H -0.017 1.017 24 H 0.002 0.998 25 H 0.261 0.739 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.087 0.913 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.119 0.881 32 H 0.088 0.912 33 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.908 2.579 13.175 13.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.091 4.091 3 H 0.074 0.926 4 C -0.004 4.004 5 C -0.570 4.570 6 H 0.078 0.922 7 C -0.198 4.198 8 N -0.575 5.575 9 Si 0.782 3.218 10 H -0.211 1.211 11 H -0.194 1.194 12 H -0.193 1.193 13 C -0.093 4.093 14 H 0.080 0.920 15 C -0.166 4.166 16 C -0.155 4.155 17 C -0.215 4.215 18 S -0.082 6.082 19 C -0.209 4.209 20 H 0.086 0.914 21 H 0.063 0.937 22 H 0.059 0.941 23 H 0.002 0.998 24 H 0.020 0.980 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.105 0.895 29 H 0.083 0.917 30 H 0.111 0.889 31 H 0.137 0.863 32 H 0.107 0.893 33 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.366 2.090 13.958 14.118 hybrid contribution 0.552 0.556 -2.202 2.337 sum 0.918 2.646 11.756 12.085 Atomic orbital electron populations 1.21732 0.95237 1.00834 1.01023 1.21067 0.95931 0.98563 0.93587 0.92556 1.19084 0.94972 0.94099 0.92202 1.21676 1.34386 1.08601 0.92302 0.92240 1.25905 0.95346 0.96055 1.02495 1.70091 1.40311 1.22863 1.24227 0.85624 0.78877 0.78860 0.78450 1.21120 1.19378 1.19282 1.21255 0.95596 0.99164 0.93312 0.92034 1.21647 0.95084 1.00276 0.99609 1.21679 1.02296 0.98882 0.92627 1.23472 0.92054 1.05287 1.00649 1.86736 1.11470 1.76436 1.33598 1.23543 1.04647 1.00241 0.92465 0.91402 0.93667 0.94140 0.99826 0.97992 0.93022 0.92372 0.91652 0.89461 0.91671 0.88947 0.86303 0.89303 0.87206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.72 8.65 71.98 0.62 -4.10 16 2 C -0.07 -2.79 1.92 -10.80 -0.02 -2.81 16 3 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 4 C 0.03 1.71 4.24 29.85 0.13 1.84 16 5 C -0.53 -29.67 8.41 25.60 0.22 -29.45 16 6 H 0.06 3.19 7.06 -2.91 -0.02 3.17 16 7 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 8 N -0.93 -56.76 13.29 21.45 0.28 -56.47 16 9 Si 0.96 44.23 29.54 68.60 2.03 46.25 16 10 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 12 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 13 C -0.07 -2.40 1.63 -10.90 -0.02 -2.42 16 14 H 0.06 2.20 8.05 -2.39 -0.02 2.18 16 15 C -0.13 -4.02 4.82 30.32 0.15 -3.87 16 16 C -0.12 -2.89 5.75 30.49 0.18 -2.72 16 17 C -0.07 -1.43 6.46 72.01 0.46 -0.97 16 18 S -0.31 -8.08 22.33 -56.49 -1.26 -9.35 16 19 C -0.06 -1.66 5.46 72.01 0.39 -1.26 16 20 H 0.07 1.95 6.36 -2.38 -0.02 1.94 16 21 H 0.04 1.76 6.95 -2.39 -0.02 1.75 16 22 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 23 H -0.02 -0.95 8.14 -2.38 -0.02 -0.97 16 24 H 0.00 0.10 5.94 -2.39 -0.01 0.09 16 25 H 0.26 15.02 8.31 -92.70 -0.77 14.25 16 26 H 0.06 2.19 5.76 -2.39 -0.01 2.18 16 27 H 0.06 1.90 8.08 -2.39 -0.02 1.89 16 28 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.06 1.75 8.05 -2.39 -0.02 1.73 16 30 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.09 2.24 8.14 -2.38 -0.02 2.23 16 33 H 0.11 2.84 6.27 -2.38 -0.01 2.83 16 Total: -1.00 -61.73 267.09 4.68 -57.05 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: 1.06 Total: 7.86 kcal Atomic # 6 Polarization: -47.91 SS G_CDS: 2.57 Total: -45.34 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: 0.28 Total: -56.47 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 16 Polarization: -8.08 SS G_CDS: -1.26 Total: -9.35 kcal Total: -61.73 4.68 -57.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260543679.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.192 kcal (2) G-P(sol) polarization free energy of solvation -61.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds