Wall clock time and date at job start Mon Mar 30 2020 02:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47120 * 2 1 4 4 H 1.08992 * 109.46987 * 307.24726 * 3 2 1 5 5 C 1.50702 * 109.46888 * 187.24882 * 3 2 1 6 6 H 1.08002 * 119.99710 * 274.88764 * 5 3 2 7 7 C 1.37880 * 120.00076 * 94.61019 * 5 3 2 8 8 N 1.31513 * 120.00118 * 189.43784 * 7 5 3 9 9 Si 1.86797 * 119.99654 * 9.43534 * 7 5 3 10 10 H 1.48505 * 109.46846 * 87.32169 * 9 7 5 11 11 H 1.48500 * 109.46853 * 207.31370 * 9 7 5 12 12 H 1.48493 * 109.47616 * 327.31901 * 9 7 5 13 13 C 1.52999 * 109.46899 * 67.24946 * 3 2 1 14 14 H 1.08997 * 109.57518 * 52.50976 * 13 3 2 15 15 C 1.53096 * 109.57497 * 172.76586 * 13 3 2 16 16 C 1.52580 * 109.95694 * 182.83209 * 15 13 3 17 17 C 1.52585 * 110.72488 * 289.32474 * 16 15 13 18 18 C 1.53095 * 109.95389 * 70.67552 * 17 16 15 19 19 S 1.81746 * 109.57644 * 292.25313 * 13 3 2 20 20 H 1.09007 * 109.46794 * 43.16453 * 1 2 3 21 21 H 1.09002 * 109.47173 * 163.16623 * 1 2 3 22 22 H 1.08999 * 109.46906 * 283.16820 * 1 2 3 23 23 H 1.09001 * 109.47094 * 240.00281 * 2 1 3 24 24 H 1.08996 * 109.46943 * 120.00304 * 2 1 3 25 25 H 0.97000 * 120.00025 * 179.97438 * 8 7 5 26 26 H 1.09005 * 109.39129 * 302.98183 * 15 13 3 27 27 H 1.09002 * 109.38830 * 62.68364 * 15 13 3 28 28 H 1.08992 * 109.22566 * 49.65076 * 16 15 13 29 29 H 1.09001 * 109.22344 * 169.04808 * 16 15 13 30 30 H 1.08999 * 109.38907 * 190.82249 * 17 16 15 31 31 H 1.08994 * 109.39255 * 310.62658 * 17 16 15 32 32 H 1.09008 * 109.57346 * 56.78357 * 18 17 16 33 33 H 1.09003 * 109.57696 * 177.03437 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5747 1.9924 -0.8180 5 6 3.5363 1.4463 -0.1793 6 1 4.1831 1.3288 0.6776 7 6 4.0795 1.5939 -1.4380 8 7 5.3689 1.4127 -1.6231 9 14 2.9839 2.0513 -2.8801 10 1 2.8691 3.5294 -2.9652 11 1 3.5762 1.5276 -4.1372 12 1 1.6357 1.4605 -2.6845 13 6 1.6841 2.1093 1.3303 14 1 2.0352 1.4892 2.1550 15 6 2.3463 3.4875 1.4067 16 6 2.0547 4.1311 2.7590 17 6 0.5885 4.5418 2.8567 18 6 -0.2967 3.2973 2.9642 19 16 -0.1182 2.3132 1.4462 20 1 -0.3633 0.7496 -0.7031 21 1 -0.3633 -0.9836 -0.2976 22 1 -0.3633 0.2341 1.0006 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 5.7509 1.5162 -2.5087 26 1 3.4237 3.3787 1.2824 27 1 1.9540 4.1219 0.6118 28 1 2.2815 3.4185 3.5520 29 1 2.6829 5.0138 2.8793 30 1 0.4453 5.1651 3.7393 31 1 0.3106 5.1059 1.9664 32 1 0.0141 2.7012 3.8223 33 1 -1.3371 3.5986 3.0865 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260550380.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:42 Heat of formation + Delta-G solvation = -47.509443 kcal Electronic energy + Delta-G solvation = -13145.137269 eV Core-core repulsion = 11102.079727 eV Total energy + Delta-G solvation = -2043.057543 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.55612 -36.53397 -34.14642 -31.92888 -29.58709 -27.40193 -24.88340 -23.42545 -21.48777 -20.95585 -19.33665 -17.41068 -16.61287 -16.04790 -15.25107 -15.01155 -14.76786 -14.71995 -14.36539 -14.19419 -13.48552 -13.41931 -13.20044 -12.76732 -12.50007 -12.26105 -11.98275 -11.86811 -11.75624 -11.74282 -11.34072 -11.15646 -10.79540 -10.56511 -10.16146 -8.32174 -8.28538 -6.28215 1.04270 1.32580 1.35875 1.45679 1.84232 2.34894 3.07080 3.80331 3.96501 4.00109 4.23063 4.30208 4.44960 4.52596 4.61237 4.67357 4.71448 4.82709 4.92299 5.01687 5.08306 5.19547 5.20566 5.29257 5.39674 5.44304 5.50283 5.54924 5.62076 5.78546 6.31030 6.74909 7.34920 8.87590 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.032854 B = 0.012205 C = 0.010379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.056043 B = 2293.607064 C = 2697.135334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.114 4.114 3 C 0.028 3.972 4 H 0.034 0.966 5 C -0.495 4.495 6 H 0.038 0.962 7 C 0.021 3.979 8 N -0.944 5.944 9 Si 0.925 3.075 10 H -0.268 1.268 11 H -0.289 1.289 12 H -0.249 1.249 13 C -0.014 4.014 14 H 0.068 0.932 15 C -0.107 4.107 16 C -0.125 4.125 17 C -0.114 4.114 18 C -0.096 4.096 19 S -0.285 6.285 20 H 0.040 0.960 21 H 0.056 0.944 22 H 0.090 0.910 23 H 0.034 0.966 24 H 0.049 0.951 25 H 0.265 0.735 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.711 4.545 7.727 14.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.152 4.152 3 C 0.008 3.992 4 H 0.052 0.948 5 C -0.534 4.534 6 H 0.057 0.943 7 C -0.176 4.176 8 N -0.584 5.584 9 Si 0.750 3.250 10 H -0.193 1.193 11 H -0.215 1.215 12 H -0.173 1.173 13 C -0.142 4.142 14 H 0.086 0.914 15 C -0.146 4.146 16 C -0.162 4.162 17 C -0.152 4.152 18 C -0.244 4.244 19 S -0.056 6.056 20 H 0.059 0.941 21 H 0.075 0.925 22 H 0.108 0.892 23 H 0.053 0.947 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.111 0.889 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -12.413 4.188 6.955 14.833 hybrid contribution 1.259 0.423 -0.211 1.344 sum -11.155 4.612 6.744 13.827 Atomic orbital electron populations 1.22096 0.95244 1.00357 1.03789 1.21685 0.95518 0.97916 1.00059 1.19151 0.94345 0.93115 0.92570 0.94814 1.20997 0.90657 1.48431 0.93354 0.94343 1.25709 0.95814 0.94943 1.01153 1.70044 1.13490 1.51224 1.23686 0.86047 0.80489 0.79429 0.79043 1.19338 1.21513 1.17321 1.23182 0.90394 0.99190 1.01475 0.91361 1.21634 1.00982 0.94270 0.97746 1.21545 0.97386 1.00941 0.96349 1.21652 0.93573 0.96668 1.03331 1.23648 1.04266 0.98617 0.97823 1.87133 1.11910 1.68631 1.37899 0.94060 0.92477 0.89211 0.94670 0.93204 0.92637 0.92077 0.92735 0.92028 0.90601 0.88883 0.91600 0.89780 0.86747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.53 8.33 71.98 0.60 -4.93 16 2 C -0.11 -4.82 5.37 30.60 0.16 -4.66 16 3 C 0.03 1.30 1.28 -11.54 -0.01 1.28 16 4 H 0.03 1.61 4.93 -2.39 -0.01 1.60 16 5 C -0.49 -27.21 7.23 25.60 0.18 -27.03 16 6 H 0.04 2.33 7.99 -2.91 -0.02 2.31 16 7 C 0.02 1.22 5.47 84.66 0.46 1.69 16 8 N -0.94 -58.08 13.96 21.45 0.30 -57.79 16 9 Si 0.92 44.49 27.21 68.60 1.87 46.36 16 10 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 12 H -0.25 -11.44 6.54 99.48 0.65 -10.79 16 13 C -0.01 -0.54 2.13 30.63 0.07 -0.48 16 14 H 0.07 2.71 8.11 -2.39 -0.02 2.69 16 15 C -0.11 -4.00 4.76 30.49 0.14 -3.85 16 16 C -0.12 -3.48 5.61 30.32 0.17 -3.31 16 17 C -0.11 -2.62 5.76 30.49 0.18 -2.45 16 18 C -0.10 -2.30 6.45 72.01 0.46 -1.84 16 19 S -0.29 -9.30 17.00 -56.49 -0.96 -10.26 16 20 H 0.04 1.51 7.56 -2.38 -0.02 1.49 16 21 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 22 H 0.09 3.00 5.46 -15.01 -0.08 2.92 16 23 H 0.03 1.58 8.13 -2.39 -0.02 1.56 16 24 H 0.05 2.07 8.11 -2.39 -0.02 2.05 16 25 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 26 H 0.06 2.65 6.86 -2.38 -0.02 2.64 16 27 H 0.05 2.09 8.06 -2.39 -0.02 2.07 16 28 H 0.06 1.68 8.08 -2.39 -0.02 1.66 16 29 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.07 1.62 8.06 -2.39 -0.02 1.60 16 32 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 33 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -60.87 261.65 4.55 -56.32 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: 0.93 Total: 10.93 kcal Atomic # 6 Polarization: -47.98 SS G_CDS: 2.42 Total: -45.56 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: 0.30 Total: -57.79 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.87 Total: 46.36 kcal Atomic # 16 Polarization: -9.30 SS G_CDS: -0.96 Total: -10.26 kcal Total: -60.87 4.55 -56.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260550380.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.808 kcal (2) G-P(sol) polarization free energy of solvation -60.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds