Wall clock time and date at job start Mon Mar 30 2020 02:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47050 * 2 1 4 4 H 1.09004 * 109.46747 * 305.79857 * 3 2 1 5 5 C 1.50702 * 109.47183 * 65.79873 * 3 2 1 6 6 H 1.08003 * 119.99594 * 63.97075 * 5 3 2 7 7 C 1.37874 * 119.99958 * 243.97023 * 5 3 2 8 8 N 1.31512 * 120.00112 * 8.26434 * 7 5 3 9 9 Si 1.86800 * 119.99857 * 188.25871 * 7 5 3 10 10 H 1.48501 * 109.47359 * 180.02562 * 9 7 5 11 11 H 1.48496 * 109.47207 * 300.00586 * 9 7 5 12 12 H 1.48500 * 109.46950 * 60.00173 * 9 7 5 13 13 C 1.52999 * 109.47036 * 185.80290 * 3 2 1 14 14 H 1.09008 * 109.57368 * 304.99594 * 13 3 2 15 15 C 1.53098 * 109.57400 * 184.74374 * 13 3 2 16 16 C 1.52575 * 109.96279 * 177.29636 * 15 13 3 17 17 C 1.52583 * 110.83733 * 70.48156 * 16 15 13 18 18 C 1.53096 * 109.95915 * 289.36855 * 17 16 15 19 19 S 1.81740 * 109.57886 * 65.25448 * 13 3 2 20 20 H 1.08997 * 109.46549 * 64.34582 * 1 2 3 21 21 H 1.09004 * 109.46822 * 184.34319 * 1 2 3 22 22 H 1.08998 * 109.47235 * 304.34054 * 1 2 3 23 23 H 1.09003 * 109.47461 * 240.00038 * 2 1 3 24 24 H 1.08997 * 109.47287 * 119.99849 * 2 1 3 25 25 H 0.96998 * 119.99802 * 355.41821 * 8 7 5 26 26 H 1.08998 * 109.39064 * 297.31153 * 15 13 3 27 27 H 1.08999 * 109.39073 * 57.01704 * 15 13 3 28 28 H 1.08995 * 109.13002 * 310.15246 * 16 15 13 29 29 H 1.08992 * 109.16898 * 190.83711 * 16 15 13 30 30 H 1.09004 * 109.38665 * 169.21887 * 17 16 15 31 31 H 1.09002 * 109.38857 * 49.52306 * 17 16 15 32 32 H 1.08999 * 109.57254 * 303.22211 * 18 17 16 33 33 H 1.08994 * 109.57635 * 182.83472 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5943 1.9854 -0.8336 5 6 1.6583 2.1103 1.2959 6 1 2.0625 1.7478 2.2296 7 6 0.7933 3.1838 1.2896 8 7 0.1750 3.5236 0.1797 9 14 0.4992 4.1556 2.8576 10 1 -0.4663 5.2510 2.5874 11 1 -0.0535 3.2556 3.9015 12 1 1.7832 4.7323 3.3306 13 6 3.5631 1.4450 -0.1458 14 1 4.0058 0.8285 0.6366 15 6 4.0873 2.8785 -0.0276 16 6 5.6111 2.8839 -0.1048 17 6 6.0843 2.5469 -1.5157 18 6 5.8137 1.0709 -1.8190 19 16 4.0199 0.7820 -1.7752 20 1 -0.3632 0.4449 -0.9264 21 1 -0.3633 -1.0248 0.0778 22 1 -0.3633 0.5797 0.8485 23 1 1.8935 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 0.3773 3.0618 -0.6490 26 1 3.6836 3.4798 -0.8422 27 1 3.7699 3.3025 0.9250 28 1 6.0067 2.1455 0.5925 29 1 5.9799 3.8717 0.1711 30 1 7.1537 2.7425 -1.5950 31 1 5.5500 3.1680 -2.2346 32 1 6.3023 0.4485 -1.0693 33 1 6.1993 0.8247 -2.8083 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260550382.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:44 Heat of formation + Delta-G solvation = -39.399727 kcal Electronic energy + Delta-G solvation = -13100.988152 eV Core-core repulsion = 11058.282273 eV Total energy + Delta-G solvation = -2042.705879 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -36.95907 -35.06643 -31.63624 -30.66459 -27.62636 -24.96318 -23.80910 -21.44403 -20.15177 -19.77194 -16.66463 -16.18919 -14.71578 -14.32229 -13.75366 -13.61275 -13.16139 -13.06735 -12.62928 -12.49808 -12.03917 -11.46185 -11.29382 -11.05227 -10.80734 -10.66711 -10.36725 -10.29357 -10.16987 -9.89772 -9.46904 -9.26460 -9.01808 -8.53318 -8.22724 -7.03062 -6.36579 -4.04794 2.41628 3.28907 3.41535 3.42703 3.60897 4.50231 5.01472 5.13367 5.32733 5.34917 5.55513 5.71181 5.81822 5.95094 6.04508 6.18634 6.25570 6.33554 6.36266 6.38779 6.50303 6.82412 6.86619 6.97209 7.04272 7.12088 7.32333 7.46407 7.52572 8.21038 8.41287 8.87294 9.64486 11.01471 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.031280 B = 0.011777 C = 0.009314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.918237 B = 2376.954651 C = 3005.384078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.110 4.110 3 C 0.042 3.958 4 H 0.054 0.946 5 C -0.581 4.581 6 H 0.048 0.952 7 C 0.028 3.972 8 N -0.905 5.905 9 Si 1.060 2.940 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.288 1.288 13 C -0.012 4.012 14 H 0.066 0.934 15 C -0.104 4.104 16 C -0.130 4.130 17 C -0.118 4.118 18 C -0.084 4.084 19 S -0.306 6.306 20 H 0.038 0.962 21 H 0.026 0.974 22 H 0.067 0.933 23 H 0.036 0.964 24 H 0.041 0.959 25 H 0.272 0.728 26 H 0.063 0.937 27 H 0.089 0.911 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.660 -2.257 -1.205 9.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.148 4.148 3 C 0.021 3.979 4 H 0.072 0.928 5 C -0.621 4.621 6 H 0.066 0.934 7 C -0.178 4.178 8 N -0.541 5.541 9 Si 0.889 3.111 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.214 1.214 13 C -0.140 4.140 14 H 0.084 0.916 15 C -0.143 4.143 16 C -0.167 4.167 17 C -0.157 4.157 18 C -0.232 4.232 19 S -0.078 6.078 20 H 0.057 0.943 21 H 0.045 0.955 22 H 0.086 0.914 23 H 0.055 0.945 24 H 0.059 0.941 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.108 0.892 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.143 -1.502 -1.393 7.431 hybrid contribution 1.807 -0.834 0.284 2.010 sum 8.950 -2.336 -1.109 9.316 Atomic orbital electron populations 1.21564 0.96654 0.98607 1.02090 1.21645 0.95598 0.98902 0.98615 1.18949 0.86580 0.93297 0.99046 0.92834 1.21692 1.31568 1.16897 0.91968 0.93373 1.25720 0.92888 0.95789 1.03388 1.70820 1.38301 1.44477 1.00550 0.83668 0.76403 0.76461 0.74616 1.20834 1.21497 1.21432 1.23729 1.03286 0.96974 0.90046 0.91586 1.21640 0.92245 0.96175 1.04227 1.21596 0.97903 1.01272 0.95953 1.21689 1.00596 0.95072 0.98345 1.23317 0.96385 0.99207 1.04309 1.86867 1.07189 1.82456 1.31275 0.94282 0.95508 0.91420 0.94499 0.94061 0.91441 0.91860 0.89212 0.92588 0.92004 0.92065 0.91012 0.90895 0.89088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 9.80 37.16 0.36 -2.54 16 2 C -0.11 -2.45 5.30 -26.73 -0.14 -2.60 16 3 C 0.04 1.00 1.63 -91.77 -0.15 0.85 16 4 H 0.05 1.42 5.74 -51.93 -0.30 1.13 16 5 C -0.58 -15.04 5.72 -34.44 -0.20 -15.24 16 6 H 0.05 1.27 7.83 -52.48 -0.41 0.86 16 7 C 0.03 0.75 5.43 -17.82 -0.10 0.65 16 8 N -0.91 -25.87 13.65 55.43 0.76 -25.12 16 9 Si 1.06 24.10 29.91 -169.99 -5.08 19.01 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.36 7.11 56.52 0.40 -5.95 16 12 H -0.29 -6.25 7.11 56.52 0.40 -5.84 16 13 C -0.01 -0.25 2.12 -26.68 -0.06 -0.31 16 14 H 0.07 1.41 8.14 -51.92 -0.42 0.98 16 15 C -0.10 -2.07 4.80 -26.90 -0.13 -2.20 16 16 C -0.13 -2.06 5.61 -27.16 -0.15 -2.22 16 17 C -0.12 -1.70 5.75 -26.90 -0.15 -1.85 16 18 C -0.08 -1.26 6.46 37.21 0.24 -1.02 16 19 S -0.31 -5.89 20.45 -107.50 -2.20 -8.09 16 20 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 21 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.07 1.63 7.27 -51.93 -0.38 1.25 16 23 H 0.04 0.80 6.97 -51.93 -0.36 0.43 16 24 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.27 7.86 6.30 -40.82 -0.26 7.60 16 26 H 0.06 1.35 8.06 -51.93 -0.42 0.93 16 27 H 0.09 1.96 6.97 -51.93 -0.36 1.59 16 28 H 0.06 0.87 8.08 -51.93 -0.42 0.45 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 1.09 8.06 -51.93 -0.42 0.67 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 268.38 15.07 4.04 4.04 Total: -1.00 -27.01 268.38 -8.46 -35.47 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -5.50 Total: 1.16 kcal Atomic # 6 Polarization: -26.00 SS G_CDS: -0.47 Total: -26.47 kcal Atomic # 7 Polarization: -25.87 SS G_CDS: 0.76 Total: -25.12 kcal Atomic # 14 Polarization: 24.10 SS G_CDS: -5.08 Total: 19.01 kcal Atomic # 16 Polarization: -5.89 SS G_CDS: -2.20 Total: -8.09 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -27.01 -8.46 -35.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260550382.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.934 kcal (2) G-P(sol) polarization free energy of solvation -27.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds