Wall clock time and date at job start Mon Mar 30 2020 02:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47050 * 2 1 4 4 H 1.09004 * 109.46747 * 305.79857 * 3 2 1 5 5 C 1.50702 * 109.47183 * 65.79873 * 3 2 1 6 6 H 1.08003 * 119.99594 * 63.97075 * 5 3 2 7 7 C 1.37874 * 119.99958 * 243.97023 * 5 3 2 8 8 N 1.31512 * 120.00112 * 8.26434 * 7 5 3 9 9 Si 1.86800 * 119.99857 * 188.25871 * 7 5 3 10 10 H 1.48501 * 109.47359 * 180.02562 * 9 7 5 11 11 H 1.48496 * 109.47207 * 300.00586 * 9 7 5 12 12 H 1.48500 * 109.46950 * 60.00173 * 9 7 5 13 13 C 1.52999 * 109.47036 * 185.80290 * 3 2 1 14 14 H 1.09008 * 109.57368 * 304.99594 * 13 3 2 15 15 C 1.53098 * 109.57400 * 184.74374 * 13 3 2 16 16 C 1.52575 * 109.96279 * 177.29636 * 15 13 3 17 17 C 1.52583 * 110.83733 * 70.48156 * 16 15 13 18 18 C 1.53096 * 109.95915 * 289.36855 * 17 16 15 19 19 S 1.81740 * 109.57886 * 65.25448 * 13 3 2 20 20 H 1.08997 * 109.46549 * 64.34582 * 1 2 3 21 21 H 1.09004 * 109.46822 * 184.34319 * 1 2 3 22 22 H 1.08998 * 109.47235 * 304.34054 * 1 2 3 23 23 H 1.09003 * 109.47461 * 240.00038 * 2 1 3 24 24 H 1.08997 * 109.47287 * 119.99849 * 2 1 3 25 25 H 0.96998 * 119.99802 * 355.41821 * 8 7 5 26 26 H 1.08998 * 109.39064 * 297.31153 * 15 13 3 27 27 H 1.08999 * 109.39073 * 57.01704 * 15 13 3 28 28 H 1.08995 * 109.13002 * 310.15246 * 16 15 13 29 29 H 1.08992 * 109.16898 * 190.83711 * 16 15 13 30 30 H 1.09004 * 109.38665 * 169.21887 * 17 16 15 31 31 H 1.09002 * 109.38857 * 49.52306 * 17 16 15 32 32 H 1.08999 * 109.57254 * 303.22211 * 18 17 16 33 33 H 1.08994 * 109.57635 * 182.83472 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5943 1.9854 -0.8336 5 6 1.6583 2.1103 1.2959 6 1 2.0625 1.7478 2.2296 7 6 0.7933 3.1838 1.2896 8 7 0.1750 3.5236 0.1797 9 14 0.4992 4.1556 2.8576 10 1 -0.4663 5.2510 2.5874 11 1 -0.0535 3.2556 3.9015 12 1 1.7832 4.7323 3.3306 13 6 3.5631 1.4450 -0.1458 14 1 4.0058 0.8285 0.6366 15 6 4.0873 2.8785 -0.0276 16 6 5.6111 2.8839 -0.1048 17 6 6.0843 2.5469 -1.5157 18 6 5.8137 1.0709 -1.8190 19 16 4.0199 0.7820 -1.7752 20 1 -0.3632 0.4449 -0.9264 21 1 -0.3633 -1.0248 0.0778 22 1 -0.3633 0.5797 0.8485 23 1 1.8935 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 0.3773 3.0618 -0.6490 26 1 3.6836 3.4798 -0.8422 27 1 3.7699 3.3025 0.9250 28 1 6.0067 2.1455 0.5925 29 1 5.9799 3.8717 0.1711 30 1 7.1537 2.7425 -1.5950 31 1 5.5500 3.1680 -2.2346 32 1 6.3023 0.4485 -1.0693 33 1 6.1993 0.8247 -2.8083 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260550382.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:44 Heat of formation + Delta-G solvation = -52.419146 kcal Electronic energy + Delta-G solvation = -13101.552716 eV Core-core repulsion = 11058.282273 eV Total energy + Delta-G solvation = -2043.270444 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.60903 -36.64607 -33.62366 -32.22709 -29.17525 -26.75900 -25.58014 -22.96438 -21.92661 -21.33747 -18.63123 -17.72805 -16.26590 -15.89417 -15.58927 -15.12182 -14.70930 -14.59522 -14.36256 -14.05152 -13.73535 -13.17203 -12.75305 -12.72036 -12.55267 -12.26908 -11.99131 -11.93673 -11.79624 -11.62442 -11.20376 -11.08377 -10.58866 -10.51472 -10.16081 -8.56945 -8.49774 -6.17368 0.96782 1.55590 1.61369 1.79498 1.80244 2.60999 3.28881 3.75996 3.91149 3.94569 4.19884 4.31492 4.37354 4.42461 4.57855 4.61817 4.68436 4.79105 4.92692 4.99551 5.04955 5.10163 5.16037 5.25229 5.34163 5.44560 5.46317 5.58066 5.64247 6.17039 6.28569 6.74881 7.58530 8.88228 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.031280 B = 0.011777 C = 0.009314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.918237 B = 2376.954651 C = 3005.384078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.105 4.105 3 C 0.040 3.960 4 H 0.021 0.979 5 C -0.578 4.578 6 H 0.042 0.958 7 C -0.016 4.016 8 N -0.934 5.934 9 Si 1.100 2.900 10 H -0.290 1.290 11 H -0.275 1.275 12 H -0.270 1.270 13 C -0.008 4.008 14 H 0.064 0.936 15 C -0.098 4.098 16 C -0.124 4.124 17 C -0.114 4.114 18 C -0.070 4.070 19 S -0.340 6.340 20 H 0.027 0.973 21 H 0.057 0.943 22 H 0.040 0.960 23 H 0.045 0.955 24 H 0.043 0.957 25 H 0.258 0.742 26 H 0.038 0.962 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.845 -2.764 -0.916 11.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.143 4.143 3 C 0.020 3.980 4 H 0.039 0.961 5 C -0.617 4.617 6 H 0.060 0.940 7 C -0.216 4.216 8 N -0.573 5.573 9 Si 0.923 3.077 10 H -0.216 1.216 11 H -0.201 1.201 12 H -0.195 1.195 13 C -0.136 4.136 14 H 0.082 0.918 15 C -0.138 4.138 16 C -0.162 4.162 17 C -0.153 4.153 18 C -0.218 4.218 19 S -0.112 6.112 20 H 0.046 0.954 21 H 0.076 0.924 22 H 0.060 0.940 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.071 0.929 26 H 0.057 0.943 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.119 0.881 31 H 0.079 0.921 32 H 0.106 0.894 33 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 9.341 -2.026 -1.095 9.621 hybrid contribution 1.196 -0.745 0.134 1.415 sum 10.537 -2.770 -0.961 10.937 Atomic orbital electron populations 1.21473 0.96473 0.99902 1.00289 1.21571 0.95734 0.97959 0.99050 1.18873 0.88751 0.93526 0.96890 0.96104 1.21857 1.30764 1.16573 0.92538 0.93994 1.26870 0.92798 0.96876 1.05032 1.70931 1.40124 1.45471 1.00758 0.83152 0.76955 0.75446 0.72131 1.21569 1.20076 1.19531 1.23365 1.01181 0.97771 0.91311 0.91782 1.21530 0.95607 0.94871 1.01769 1.21553 0.94303 1.02722 0.97588 1.21670 1.02753 0.94221 0.96648 1.23478 0.91906 1.00069 1.06353 1.86893 1.12290 1.82318 1.29697 0.95369 0.92408 0.94040 0.93612 0.93817 0.92941 0.94281 0.91726 0.91660 0.90324 0.88135 0.92060 0.89380 0.86556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.50 9.80 71.98 0.71 -4.79 16 2 C -0.11 -4.72 5.30 30.60 0.16 -4.56 16 3 C 0.04 1.95 1.63 -11.54 -0.02 1.93 16 4 H 0.02 1.16 5.74 -2.39 -0.01 1.14 16 5 C -0.58 -30.47 5.72 25.60 0.15 -30.33 16 6 H 0.04 2.22 7.83 -2.91 -0.02 2.20 16 7 C -0.02 -0.88 5.43 84.65 0.46 -0.42 16 8 N -0.93 -55.32 13.65 21.45 0.29 -55.03 16 9 Si 1.10 48.90 29.91 68.60 2.05 50.95 16 10 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 11 H -0.28 -11.56 7.11 99.48 0.71 -10.86 16 12 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 13 C -0.01 -0.33 2.12 30.63 0.06 -0.26 16 14 H 0.06 2.68 8.14 -2.38 -0.02 2.67 16 15 C -0.10 -3.93 4.80 30.49 0.15 -3.79 16 16 C -0.12 -3.64 5.61 30.31 0.17 -3.47 16 17 C -0.11 -2.87 5.75 30.49 0.18 -2.69 16 18 C -0.07 -1.86 6.46 72.01 0.46 -1.39 16 19 S -0.34 -12.70 20.45 -56.49 -1.16 -13.85 16 20 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 21 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 22 H 0.04 2.03 7.27 -2.39 -0.02 2.01 16 23 H 0.05 1.96 6.97 -2.39 -0.02 1.95 16 24 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.26 15.69 6.30 -92.71 -0.58 15.10 16 26 H 0.04 1.71 8.06 -2.39 -0.02 1.69 16 27 H 0.06 2.86 6.97 -2.39 -0.02 2.84 16 28 H 0.06 1.81 8.08 -2.39 -0.02 1.80 16 29 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16 31 H 0.06 1.70 8.06 -2.39 -0.02 1.68 16 32 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -59.47 268.38 4.90 -54.57 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 1.24 Total: 13.14 kcal Atomic # 6 Polarization: -52.26 SS G_CDS: 2.48 Total: -49.78 kcal Atomic # 7 Polarization: -55.32 SS G_CDS: 0.29 Total: -55.03 kcal Atomic # 14 Polarization: 48.90 SS G_CDS: 2.05 Total: 50.95 kcal Atomic # 16 Polarization: -12.70 SS G_CDS: -1.16 Total: -13.85 kcal Total: -59.47 4.90 -54.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260550382.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.149 kcal (2) G-P(sol) polarization free energy of solvation -59.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds