Wall clock time and date at job start Mon Mar 30 2020 02:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 C 1.52996 * 109.47166 * 65.00083 * 3 2 1 14 14 H 1.08996 * 109.57748 * 305.26187 * 13 3 2 15 15 C 1.53094 * 109.57813 * 184.99538 * 13 3 2 16 16 C 1.52578 * 109.95869 * 177.16768 * 15 13 3 17 17 C 1.52581 * 110.72715 * 70.68066 * 16 15 13 18 18 C 1.53103 * 109.95366 * 289.32779 * 17 16 15 19 19 S 1.81749 * 108.84147 * 63.02123 * 18 17 16 20 20 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 22 22 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 23 23 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 24 24 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 25 25 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 26 26 H 1.09002 * 109.39612 * 297.32139 * 15 13 3 27 27 H 1.09002 * 109.38524 * 57.02303 * 15 13 3 28 28 H 1.09001 * 109.23007 * 191.00253 * 16 15 13 29 29 H 1.09001 * 109.22849 * 310.36015 * 16 15 13 30 30 H 1.09000 * 109.39077 * 49.47158 * 17 16 15 31 31 H 1.08993 * 109.39577 * 169.27629 * 17 16 15 32 32 H 1.09003 * 109.57651 * 182.83070 * 18 17 16 33 33 H 1.08998 * 109.57643 * 303.21185 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5928 0.1354 -0.2252 11 1 6.3984 0.2005 -2.6418 12 1 6.5053 2.2671 -1.3780 13 6 1.6353 2.1265 1.3073 14 1 0.5571 2.0440 1.4441 15 6 2.0347 3.6036 1.2585 16 6 1.5724 4.3104 2.5292 17 6 2.3983 3.8579 3.7297 18 6 2.0451 2.4130 4.0921 19 16 2.4915 1.3328 2.7002 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5138 -0.8899 23 1 1.8933 -0.5138 -0.8901 24 1 1.8934 -0.5139 0.8899 25 1 3.8295 -0.0694 -2.9455 26 1 3.1185 3.6829 1.1741 27 1 1.5703 4.0755 0.3926 28 1 1.6842 5.3872 2.4020 29 1 0.5226 4.0779 2.7076 30 1 3.4584 3.9206 3.4840 31 1 2.1852 4.5052 4.5803 32 1 2.6011 2.1128 4.9803 33 1 0.9751 2.3360 4.2855 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260550386.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:47 Heat of formation + Delta-G solvation = -32.831196 kcal Electronic energy + Delta-G solvation = -13119.306538 eV Core-core repulsion = 11076.885491 eV Total energy + Delta-G solvation = -2042.421046 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -36.90840 -34.86883 -31.71845 -30.39601 -27.61133 -25.60122 -23.27993 -21.72689 -20.15238 -19.17402 -16.73849 -15.58238 -14.83800 -14.29940 -13.92851 -13.45962 -13.17474 -12.90304 -12.54399 -12.43923 -11.79143 -11.39401 -11.15136 -10.97234 -10.74597 -10.68125 -10.53634 -10.36503 -9.94173 -9.80562 -9.60782 -9.23856 -8.82038 -8.51953 -8.21306 -6.68479 -5.90797 -3.94273 2.60089 3.38548 3.42546 3.46319 3.50993 4.51966 5.07223 5.18233 5.34030 5.42761 5.59760 5.73630 5.88729 5.98925 6.05470 6.20341 6.27467 6.35628 6.40066 6.42561 6.55942 6.63359 6.73659 6.99994 7.03633 7.25873 7.48041 7.81506 7.99500 8.19428 8.51093 9.08909 9.68697 11.14845 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.029157 B = 0.012175 C = 0.010221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.077328 B = 2299.225274 C = 2738.770459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.122 4.122 3 C 0.066 3.934 4 H 0.036 0.964 5 C -0.499 4.499 6 H 0.068 0.932 7 C 0.060 3.940 8 N -0.893 5.893 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.290 1.290 12 H -0.279 1.279 13 C -0.029 4.029 14 H 0.062 0.938 15 C -0.111 4.111 16 C -0.128 4.128 17 C -0.116 4.116 18 C -0.108 4.108 19 S -0.232 6.232 20 H 0.032 0.968 21 H 0.035 0.965 22 H 0.041 0.959 23 H 0.094 0.906 24 H 0.042 0.958 25 H 0.258 0.742 26 H 0.082 0.918 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.843 4.884 8.106 10.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.160 4.160 3 C 0.047 3.953 4 H 0.054 0.946 5 C -0.538 4.538 6 H 0.086 0.914 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.202 1.202 11 H -0.216 1.216 12 H -0.204 1.204 13 C -0.158 4.158 14 H 0.081 0.919 15 C -0.150 4.150 16 C -0.166 4.166 17 C -0.155 4.155 18 C -0.256 4.256 19 S -0.005 6.005 20 H 0.052 0.948 21 H 0.054 0.946 22 H 0.060 0.940 23 H 0.112 0.888 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.101 0.899 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.108 0.892 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.194 3.859 7.957 9.403 hybrid contribution 0.162 1.004 -0.115 1.023 sum -3.032 4.863 7.842 9.713 Atomic orbital electron populations 1.21867 0.99676 0.99177 0.99673 1.21670 0.91318 1.00163 1.02833 1.18631 0.96463 0.91944 0.88298 0.94617 1.21249 0.90958 1.36723 1.04897 0.91394 1.24941 0.97716 0.95495 0.95888 1.69870 1.34710 1.39011 1.09693 0.86710 0.86379 0.78133 0.77119 1.20226 1.21613 1.20431 1.23500 0.98373 0.96403 0.97488 0.91931 1.21723 1.03194 0.94154 0.95952 1.21574 0.99300 1.00005 0.95714 1.21647 1.01290 0.94822 0.97711 1.23471 1.03236 0.98134 1.00775 1.87228 1.70595 1.40088 1.02585 0.94847 0.94560 0.93988 0.88767 0.93905 0.93160 0.89920 0.91795 0.92164 0.92751 0.90839 0.92395 0.89159 0.91370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 9.68 37.16 0.36 -2.59 16 2 C -0.12 -2.90 5.15 -26.73 -0.14 -3.04 16 3 C 0.07 1.59 1.56 -91.77 -0.14 1.45 16 4 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 5 C -0.50 -13.27 7.16 -34.44 -0.25 -13.52 16 6 H 0.07 1.82 6.38 -52.49 -0.34 1.48 16 7 C 0.06 1.65 5.29 -17.82 -0.09 1.55 16 8 N -0.89 -25.36 11.28 55.43 0.63 -24.73 16 9 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C -0.03 -0.59 2.15 -26.68 -0.06 -0.65 16 14 H 0.06 1.23 6.34 -51.93 -0.33 0.90 16 15 C -0.11 -2.04 4.81 -26.90 -0.13 -2.17 16 16 C -0.13 -1.90 5.61 -27.16 -0.15 -2.05 16 17 C -0.12 -1.64 5.75 -26.89 -0.15 -1.80 16 18 C -0.11 -1.65 6.46 37.21 0.24 -1.41 16 19 S -0.23 -4.64 19.06 -107.50 -2.05 -6.69 16 20 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 21 H 0.04 0.67 6.46 -51.93 -0.34 0.34 16 22 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.09 2.53 5.94 -51.93 -0.31 2.22 16 24 H 0.04 1.04 7.02 -51.93 -0.36 0.68 16 25 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 26 H 0.08 1.66 6.95 -51.93 -0.36 1.30 16 27 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.78 8.08 -51.93 -0.42 0.36 16 30 H 0.07 1.11 8.06 -51.93 -0.42 0.69 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 263.48 15.07 3.97 3.97 Total: -1.00 -27.42 263.48 -8.38 -35.80 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -5.39 Total: -0.64 kcal Atomic # 6 Polarization: -23.71 SS G_CDS: -0.52 Total: -24.22 kcal Atomic # 7 Polarization: -25.36 SS G_CDS: 0.63 Total: -24.73 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -4.64 SS G_CDS: -2.05 Total: -6.69 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -27.42 -8.38 -35.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260550386.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.964 kcal (2) G-P(sol) polarization free energy of solvation -27.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds