Wall clock time and date at job start Mon Mar 30 2020 02:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 C 1.52996 * 109.47166 * 65.00083 * 3 2 1 14 14 H 1.08996 * 109.57748 * 305.26187 * 13 3 2 15 15 C 1.53094 * 109.57813 * 184.99538 * 13 3 2 16 16 C 1.52578 * 109.95869 * 177.16768 * 15 13 3 17 17 C 1.52581 * 110.72715 * 70.68066 * 16 15 13 18 18 C 1.53103 * 109.95366 * 289.32779 * 17 16 15 19 19 S 1.81749 * 108.84147 * 63.02123 * 18 17 16 20 20 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 22 22 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 23 23 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 24 24 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 25 25 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 26 26 H 1.09002 * 109.39612 * 297.32139 * 15 13 3 27 27 H 1.09002 * 109.38524 * 57.02303 * 15 13 3 28 28 H 1.09001 * 109.23007 * 191.00253 * 16 15 13 29 29 H 1.09001 * 109.22849 * 310.36015 * 16 15 13 30 30 H 1.09000 * 109.39077 * 49.47158 * 17 16 15 31 31 H 1.08993 * 109.39577 * 169.27629 * 17 16 15 32 32 H 1.09003 * 109.57651 * 182.83070 * 18 17 16 33 33 H 1.08998 * 109.57643 * 303.21185 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5928 0.1354 -0.2252 11 1 6.3984 0.2005 -2.6418 12 1 6.5053 2.2671 -1.3780 13 6 1.6353 2.1265 1.3073 14 1 0.5571 2.0440 1.4441 15 6 2.0347 3.6036 1.2585 16 6 1.5724 4.3104 2.5292 17 6 2.3983 3.8579 3.7297 18 6 2.0451 2.4130 4.0921 19 16 2.4915 1.3328 2.7002 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5138 -0.8899 23 1 1.8933 -0.5138 -0.8901 24 1 1.8934 -0.5139 0.8899 25 1 3.8295 -0.0694 -2.9455 26 1 3.1185 3.6829 1.1741 27 1 1.5703 4.0755 0.3926 28 1 1.6842 5.3872 2.4020 29 1 0.5226 4.0779 2.7076 30 1 3.4584 3.9206 3.4840 31 1 2.1852 4.5052 4.5803 32 1 2.6011 2.1128 4.9803 33 1 0.9751 2.3360 4.2855 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260550386.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:47 Heat of formation + Delta-G solvation = -46.446555 kcal Electronic energy + Delta-G solvation = -13119.896944 eV Core-core repulsion = 11076.885491 eV Total energy + Delta-G solvation = -2043.011453 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.46793 -36.44313 -33.71742 -31.90836 -29.21559 -27.27356 -25.03772 -23.25238 -21.50323 -20.98655 -18.65883 -17.17492 -16.60716 -15.87102 -15.53091 -14.97496 -14.65699 -14.39970 -14.26413 -14.00957 -13.27812 -13.01193 -12.91005 -12.67432 -12.44727 -12.35805 -12.09784 -11.85477 -11.69717 -11.53540 -11.26829 -11.00858 -10.63037 -10.33638 -10.09019 -8.26797 -8.00180 -6.08446 1.14862 1.42692 1.44458 1.51051 2.03389 2.49006 3.28055 3.88403 3.99561 4.09724 4.27148 4.40295 4.52344 4.62920 4.65297 4.70448 4.86063 4.86574 4.94451 5.10961 5.15993 5.21568 5.28138 5.33960 5.35639 5.53142 5.60248 5.76686 5.97705 6.17863 6.48386 6.99921 7.56222 9.03902 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.029157 B = 0.012175 C = 0.010221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.077328 B = 2299.225274 C = 2738.770459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.116 4.116 3 C 0.065 3.935 4 H 0.007 0.993 5 C -0.500 4.500 6 H 0.062 0.938 7 C 0.010 3.990 8 N -0.920 5.920 9 Si 0.942 3.058 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.272 1.272 13 C -0.018 4.018 14 H 0.073 0.927 15 C -0.109 4.109 16 C -0.122 4.122 17 C -0.114 4.114 18 C -0.088 4.088 19 S -0.296 6.296 20 H 0.049 0.951 21 H 0.053 0.947 22 H 0.040 0.960 23 H 0.059 0.941 24 H 0.033 0.967 25 H 0.256 0.744 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.416 6.108 10.050 12.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.155 4.155 3 C 0.046 3.954 4 H 0.025 0.975 5 C -0.539 4.539 6 H 0.080 0.920 7 C -0.187 4.187 8 N -0.561 5.561 9 Si 0.769 3.231 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.197 1.197 13 C -0.146 4.146 14 H 0.091 0.909 15 C -0.149 4.149 16 C -0.159 4.159 17 C -0.153 4.153 18 C -0.236 4.236 19 S -0.070 6.070 20 H 0.068 0.932 21 H 0.072 0.928 22 H 0.059 0.941 23 H 0.078 0.922 24 H 0.052 0.948 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.113 0.887 32 H 0.127 0.873 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.764 5.093 9.904 11.755 hybrid contribution 0.326 0.640 -0.653 0.971 sum -3.438 5.732 9.250 11.413 Atomic orbital electron populations 1.21737 0.96681 1.00535 1.00399 1.21493 0.93999 0.99426 1.00553 1.18526 0.95038 0.92243 0.89639 0.97520 1.21491 0.92445 1.35672 1.04308 0.92025 1.25622 1.01372 0.95732 0.95986 1.70006 1.35946 1.40073 1.10097 0.85850 0.82135 0.78265 0.76837 1.20303 1.21472 1.19696 1.23259 0.98663 0.97137 0.95559 0.90921 1.21670 1.01620 0.93285 0.98284 1.21528 0.99848 1.00777 0.93779 1.21646 1.00375 0.94567 0.98675 1.23545 1.04476 0.97353 0.98240 1.87349 1.71507 1.42691 1.05408 0.93217 0.92835 0.94127 0.92242 0.94846 0.93485 0.92373 0.92133 0.90015 0.91547 0.92161 0.88701 0.87349 0.89687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.38 9.68 71.98 0.70 -4.68 16 2 C -0.12 -5.66 5.15 30.59 0.16 -5.50 16 3 C 0.06 3.18 1.56 -11.54 -0.02 3.17 16 4 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 5 C -0.50 -27.19 7.16 25.60 0.18 -27.01 16 6 H 0.06 3.37 6.38 -2.91 -0.02 3.35 16 7 C 0.01 0.57 5.29 84.66 0.45 1.02 16 8 N -0.92 -53.82 11.28 21.45 0.24 -53.58 16 9 Si 0.94 44.95 29.54 68.60 2.03 46.98 16 10 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 11 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 12 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 13 C -0.02 -0.72 2.15 30.62 0.07 -0.65 16 14 H 0.07 2.73 6.34 -2.39 -0.02 2.71 16 15 C -0.11 -3.90 4.81 30.49 0.15 -3.75 16 16 C -0.12 -3.19 5.61 30.32 0.17 -3.02 16 17 C -0.11 -2.79 5.75 30.49 0.18 -2.62 16 18 C -0.09 -2.39 6.46 72.02 0.46 -1.92 16 19 S -0.30 -11.56 19.06 -56.49 -1.08 -12.63 16 20 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 21 H 0.05 1.91 6.46 -2.38 -0.02 1.89 16 22 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.06 3.30 5.94 -2.38 -0.01 3.29 16 24 H 0.03 1.65 7.02 -2.39 -0.02 1.63 16 25 H 0.26 14.45 8.31 -92.70 -0.77 13.68 16 26 H 0.06 2.34 6.95 -2.39 -0.02 2.32 16 27 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.08 1.82 8.14 -2.39 -0.02 1.81 16 29 H 0.07 1.62 8.08 -2.39 -0.02 1.60 16 30 H 0.06 1.66 8.06 -2.39 -0.02 1.64 16 31 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 33 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -60.09 263.48 4.74 -55.35 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: 1.06 Total: 8.85 kcal Atomic # 6 Polarization: -47.46 SS G_CDS: 2.49 Total: -44.97 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: 0.24 Total: -53.58 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Atomic # 16 Polarization: -11.56 SS G_CDS: -1.08 Total: -12.63 kcal Total: -60.09 4.74 -55.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260550386.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.905 kcal (2) G-P(sol) polarization free energy of solvation -60.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds