Wall clock time and date at job start Mon Mar 30 2020 02:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46741 * 2 1 4 4 C 1.52997 * 109.47236 * 239.99889 * 2 1 3 5 5 C 1.50701 * 109.47212 * 64.99766 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47294 * 60.00559 * 9 7 5 11 11 H 1.48503 * 109.46954 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47431 * 300.00157 * 9 7 5 13 13 C 1.52997 * 109.47024 * 119.99412 * 2 1 3 14 14 C 1.52581 * 109.23107 * 300.60149 * 13 2 1 15 15 C 1.53116 * 109.94861 * 168.96183 * 14 13 2 16 16 S 1.81747 * 108.80625 * 63.08492 * 15 14 13 17 17 C 1.81748 * 102.22326 * 306.71382 * 16 15 14 18 18 C 1.52581 * 109.22514 * 179.40506 * 13 2 1 19 19 H 1.09004 * 109.46741 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.47403 * 300.00135 * 1 2 3 21 21 H 1.09001 * 109.46917 * 60.00677 * 1 2 3 22 22 H 1.09002 * 109.47153 * 304.99767 * 4 2 1 23 23 H 1.09001 * 109.46832 * 184.99958 * 4 2 1 24 24 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 25 25 H 1.09000 * 109.22038 * 60.00718 * 13 2 1 26 26 H 1.08999 * 109.38936 * 289.15297 * 14 13 2 27 27 H 1.09007 * 109.38947 * 48.85048 * 14 13 2 28 28 H 1.08997 * 109.60556 * 303.27591 * 15 14 13 29 29 H 1.09004 * 109.57099 * 182.87296 * 15 14 13 30 30 H 1.08999 * 109.57450 * 293.46195 * 17 16 15 31 31 H 1.08992 * 109.57433 * 173.07399 * 17 16 15 32 32 H 1.08997 * 109.39137 * 311.14666 * 18 13 2 33 33 H 1.08996 * 109.39234 * 70.85005 * 18 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0807 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7283 8 7 2.6765 -1.5188 -3.8510 9 14 1.4997 0.5632 -5.2496 10 1 2.0919 1.9236 -5.1866 11 1 1.9947 -0.1370 -6.4620 12 1 0.0197 0.6698 -5.3096 13 6 2.0400 -0.7211 1.2493 14 6 1.5161 -0.0062 2.4913 15 6 1.7810 -0.8586 3.7354 16 16 3.5765 -1.0450 3.9464 17 6 4.0916 -1.6745 2.3211 18 6 3.5657 -0.7308 1.2362 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5137 -0.8901 22 1 1.6055 -1.7198 -1.2951 23 1 3.1264 -0.7994 -1.2055 24 1 2.9238 -1.8418 -4.7316 25 1 1.6745 -1.7480 1.2452 26 1 2.0205 0.9544 2.5957 27 1 0.4436 0.1592 2.3882 28 1 1.3240 -1.8402 3.6103 29 1 1.3593 -0.3663 4.6118 30 1 3.6797 -2.6720 2.1685 31 1 5.1797 -1.7153 2.2735 32 1 3.9171 -1.0688 0.2613 33 1 3.9357 0.2773 1.4230 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260575296.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:02 Heat of formation + Delta-G solvation = -37.130717 kcal Electronic energy + Delta-G solvation = -12797.999752 eV Core-core repulsion = 10755.392265 eV Total energy + Delta-G solvation = -2042.607487 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.03258 -33.64348 -31.77720 -31.35762 -27.18758 -26.33843 -23.60433 -22.20617 -20.62732 -18.96978 -16.82478 -16.18990 -14.65492 -14.36181 -14.30840 -13.93599 -13.47309 -12.98970 -12.69050 -12.63142 -12.11962 -11.88923 -11.43199 -11.19769 -10.92659 -10.81588 -10.64089 -10.48568 -10.27231 -10.04470 -9.60766 -9.44140 -8.97881 -8.93964 -8.32391 -7.54726 -5.99777 -4.00843 1.96005 2.69295 3.32461 3.37241 3.39459 4.45579 4.90507 5.04509 5.08435 5.25720 5.35736 5.42608 5.54111 5.66608 5.81505 5.93003 6.02308 6.15170 6.22426 6.26050 6.42003 6.53004 6.59411 6.68349 7.00665 7.09302 7.18242 7.68412 7.83660 8.00382 8.44426 9.05283 9.62523 11.11485 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.055366 B = 0.007032 C = 0.006479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.605322 B = 3980.959319 C = 4320.808946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.080 4.080 3 H 0.056 0.944 4 C 0.026 3.974 5 C -0.516 4.516 6 H 0.054 0.946 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C -0.088 4.088 14 C -0.121 4.121 15 C -0.074 4.074 16 S -0.295 6.295 17 C -0.072 4.072 18 C -0.122 4.122 19 H 0.043 0.957 20 H 0.034 0.966 21 H 0.061 0.939 22 H 0.014 0.986 23 H 0.021 0.979 24 H 0.260 0.740 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.821 0.836 12.112 12.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.098 4.098 3 H 0.075 0.925 4 C -0.011 4.011 5 C -0.554 4.554 6 H 0.073 0.927 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.203 1.203 13 C -0.107 4.107 14 C -0.160 4.160 15 C -0.222 4.222 16 S -0.069 6.069 17 C -0.220 4.220 18 C -0.161 4.161 19 H 0.062 0.938 20 H 0.053 0.947 21 H 0.080 0.920 22 H 0.032 0.968 23 H 0.039 0.961 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.115 0.885 30 H 0.099 0.901 31 H 0.117 0.883 32 H 0.111 0.889 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.112 0.920 12.890 12.924 hybrid contribution -0.950 0.134 -1.958 2.180 sum -1.062 1.054 10.933 11.034 Atomic orbital electron populations 1.21800 0.96490 1.00742 1.00198 1.21181 0.94888 0.99213 0.94555 0.92510 1.19220 0.96270 0.95317 0.90271 1.21232 1.34746 1.08296 0.91135 0.92738 1.25007 0.95314 0.95073 0.99051 1.69946 1.38990 1.21181 1.23501 0.86713 0.78877 0.80165 0.82575 1.20295 1.21347 1.20322 1.21181 0.94610 0.99809 0.95097 1.21911 1.02263 0.98879 0.92897 1.23434 0.93201 1.03466 1.02101 1.86603 1.09915 1.87612 1.22804 1.23489 1.03778 1.01649 0.93043 1.21902 0.96020 0.99266 0.98886 0.93786 0.94700 0.92026 0.96810 0.96075 0.93030 0.91851 0.91087 0.90452 0.90200 0.88525 0.90084 0.88287 0.88888 0.91223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 8.66 37.16 0.32 -2.14 16 2 C -0.08 -1.56 1.92 -90.62 -0.17 -1.73 16 3 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 4 C 0.03 0.64 4.24 -27.88 -0.12 0.52 16 5 C -0.52 -14.19 8.41 -34.44 -0.29 -14.48 16 6 H 0.05 1.46 7.06 -52.49 -0.37 1.09 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 9 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 C -0.09 -1.44 1.53 -91.05 -0.14 -1.58 16 14 C -0.12 -1.66 4.94 -26.89 -0.13 -1.79 16 15 C -0.07 -0.92 6.46 37.22 0.24 -0.68 16 16 S -0.29 -4.11 22.33 -107.50 -2.40 -6.51 16 17 C -0.07 -1.00 6.46 37.21 0.24 -0.76 16 18 C -0.12 -1.95 4.94 -26.89 -0.13 -2.09 16 19 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 20 H 0.03 0.53 6.17 -51.93 -0.32 0.21 16 21 H 0.06 1.22 6.95 -51.93 -0.36 0.86 16 22 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 23 H 0.02 0.55 5.92 -51.93 -0.31 0.24 16 24 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 25 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 26 H 0.07 1.00 8.05 -51.93 -0.42 0.58 16 27 H 0.08 1.01 5.84 -51.93 -0.30 0.71 16 28 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.09 1.68 5.75 -51.93 -0.30 1.39 16 33 H 0.07 1.11 8.05 -51.93 -0.42 0.69 16 LS Contribution 266.65 15.07 4.02 4.02 Total: -1.00 -28.62 266.65 -8.26 -36.88 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -5.31 Total: -1.79 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: -0.28 Total: -23.23 kcal Atomic # 7 Polarization: -26.59 SS G_CDS: 0.74 Total: -25.85 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -4.11 SS G_CDS: -2.40 Total: -6.51 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -28.62 -8.26 -36.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260575296.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.249 kcal (2) G-P(sol) polarization free energy of solvation -28.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds