Wall clock time and date at job start Mon Mar 30 2020 02:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46741 * 2 1 4 4 C 1.52997 * 109.47236 * 239.99889 * 2 1 3 5 5 C 1.50701 * 109.47212 * 64.99766 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47294 * 60.00559 * 9 7 5 11 11 H 1.48503 * 109.46954 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47431 * 300.00157 * 9 7 5 13 13 C 1.52997 * 109.47024 * 119.99412 * 2 1 3 14 14 C 1.52581 * 109.23107 * 300.60149 * 13 2 1 15 15 C 1.53116 * 109.94861 * 168.96183 * 14 13 2 16 16 S 1.81747 * 108.80625 * 63.08492 * 15 14 13 17 17 C 1.81748 * 102.22326 * 306.71382 * 16 15 14 18 18 C 1.52581 * 109.22514 * 179.40506 * 13 2 1 19 19 H 1.09004 * 109.46741 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.47403 * 300.00135 * 1 2 3 21 21 H 1.09001 * 109.46917 * 60.00677 * 1 2 3 22 22 H 1.09002 * 109.47153 * 304.99767 * 4 2 1 23 23 H 1.09001 * 109.46832 * 184.99958 * 4 2 1 24 24 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 25 25 H 1.09000 * 109.22038 * 60.00718 * 13 2 1 26 26 H 1.08999 * 109.38936 * 289.15297 * 14 13 2 27 27 H 1.09007 * 109.38947 * 48.85048 * 14 13 2 28 28 H 1.08997 * 109.60556 * 303.27591 * 15 14 13 29 29 H 1.09004 * 109.57099 * 182.87296 * 15 14 13 30 30 H 1.08999 * 109.57450 * 293.46195 * 17 16 15 31 31 H 1.08992 * 109.57433 * 173.07399 * 17 16 15 32 32 H 1.08997 * 109.39137 * 311.14666 * 18 13 2 33 33 H 1.08996 * 109.39234 * 70.85005 * 18 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0807 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7283 8 7 2.6765 -1.5188 -3.8510 9 14 1.4997 0.5632 -5.2496 10 1 2.0919 1.9236 -5.1866 11 1 1.9947 -0.1370 -6.4620 12 1 0.0197 0.6698 -5.3096 13 6 2.0400 -0.7211 1.2493 14 6 1.5161 -0.0062 2.4913 15 6 1.7810 -0.8586 3.7354 16 16 3.5765 -1.0450 3.9464 17 6 4.0916 -1.6745 2.3211 18 6 3.5657 -0.7308 1.2362 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5137 -0.8901 22 1 1.6055 -1.7198 -1.2951 23 1 3.1264 -0.7994 -1.2055 24 1 2.9238 -1.8418 -4.7316 25 1 1.6745 -1.7480 1.2452 26 1 2.0205 0.9544 2.5957 27 1 0.4436 0.1592 2.3882 28 1 1.3240 -1.8402 3.6103 29 1 1.3593 -0.3663 4.6118 30 1 3.6797 -2.6720 2.1685 31 1 5.1797 -1.7153 2.2735 32 1 3.9171 -1.0688 0.2613 33 1 3.9357 0.2773 1.4230 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260575296.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:01 Heat of formation + Delta-G solvation = -51.832525 kcal Electronic energy + Delta-G solvation = -12798.637271 eV Core-core repulsion = 10755.392265 eV Total energy + Delta-G solvation = -2043.245006 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.44046 -35.46344 -33.57063 -32.53011 -29.05948 -27.66530 -25.37441 -23.51784 -22.05895 -20.51884 -18.57592 -17.68713 -16.56870 -15.75889 -15.54193 -15.36984 -14.71542 -14.48724 -14.13046 -13.83525 -13.74570 -13.45590 -13.18236 -12.74443 -12.62847 -12.30074 -12.26268 -11.95779 -11.86587 -11.65920 -11.25950 -10.92023 -10.68060 -10.53956 -10.40805 -8.64736 -8.16701 -6.25093 0.89092 1.39524 1.41482 1.49159 1.61814 2.41940 3.16651 3.68299 3.88081 3.89708 4.10871 4.29539 4.37448 4.39729 4.59188 4.64077 4.72328 4.82327 4.89402 4.99998 5.07468 5.14450 5.19713 5.25846 5.41973 5.47899 5.53474 5.64848 5.89257 5.92353 6.32338 6.91629 7.42752 8.94648 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.055366 B = 0.007032 C = 0.006479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.605322 B = 3980.959319 C = 4320.808946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.073 4.073 3 H 0.052 0.948 4 C 0.032 3.968 5 C -0.531 4.531 6 H 0.058 0.942 7 C -0.001 4.001 8 N -0.934 5.934 9 Si 0.956 3.044 10 H -0.268 1.268 11 H -0.286 1.286 12 H -0.268 1.268 13 C -0.082 4.082 14 C -0.113 4.113 15 C -0.068 4.068 16 S -0.304 6.304 17 C -0.067 4.067 18 C -0.118 4.118 19 H 0.040 0.960 20 H 0.072 0.928 21 H 0.041 0.959 22 H -0.016 1.016 23 H 0.000 1.000 24 H 0.261 0.739 25 H 0.057 0.943 26 H 0.071 0.929 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.121 0.879 30 H 0.082 0.918 31 H 0.108 0.892 32 H 0.063 0.937 33 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.798 1.826 13.260 13.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.092 4.092 3 H 0.070 0.930 4 C -0.005 4.005 5 C -0.570 4.570 6 H 0.077 0.923 7 C -0.198 4.198 8 N -0.575 5.575 9 Si 0.781 3.219 10 H -0.193 1.193 11 H -0.211 1.211 12 H -0.193 1.193 13 C -0.101 4.101 14 C -0.152 4.152 15 C -0.216 4.216 16 S -0.079 6.079 17 C -0.215 4.215 18 C -0.157 4.157 19 H 0.059 0.941 20 H 0.090 0.910 21 H 0.060 0.940 22 H 0.002 0.998 23 H 0.019 0.981 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.090 0.910 27 H 0.110 0.890 28 H 0.105 0.895 29 H 0.139 0.861 30 H 0.101 0.899 31 H 0.127 0.873 32 H 0.081 0.919 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.096 1.920 14.051 14.224 hybrid contribution -0.634 -0.187 -2.298 2.391 sum -1.730 1.732 11.754 12.006 Atomic orbital electron populations 1.21742 0.95110 1.00830 1.01058 1.21032 0.96007 0.98420 0.93697 0.92982 1.19110 0.94904 0.94134 0.92383 1.21682 1.34359 1.08553 0.92360 0.92340 1.25901 0.95346 0.96065 1.02492 1.70084 1.40310 1.22883 1.24226 0.85634 0.78897 0.78857 0.78477 1.19349 1.21104 1.19326 1.21083 0.94627 0.99345 0.95004 1.21820 1.02866 0.98637 0.91829 1.23493 0.91879 1.03895 1.02291 1.86672 1.11578 1.87575 1.22043 1.23400 1.04470 1.01043 0.92632 1.21800 0.96063 0.99682 0.98167 0.94075 0.90965 0.94004 0.99755 0.98139 0.93027 0.92500 0.91009 0.89036 0.89475 0.86063 0.89930 0.87320 0.91907 0.91249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.57 8.66 71.98 0.62 -3.95 16 2 C -0.07 -2.84 1.92 -10.79 -0.02 -2.86 16 3 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 4 C 0.03 1.61 4.24 29.85 0.13 1.74 16 5 C -0.53 -29.70 8.41 25.60 0.22 -29.49 16 6 H 0.06 3.15 7.06 -2.91 -0.02 3.13 16 7 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 8 N -0.93 -56.75 13.29 21.45 0.28 -56.46 16 9 Si 0.96 44.28 29.54 68.60 2.03 46.31 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 13 C -0.08 -2.60 1.53 -11.07 -0.02 -2.62 16 14 C -0.11 -2.78 4.94 30.49 0.15 -2.63 16 15 C -0.07 -1.47 6.46 72.02 0.47 -1.00 16 16 S -0.30 -7.82 22.33 -56.49 -1.26 -9.09 16 17 C -0.07 -1.83 6.46 72.02 0.46 -1.36 16 18 C -0.12 -3.79 4.94 30.49 0.15 -3.64 16 19 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 20 H 0.07 1.98 6.17 -2.39 -0.01 1.97 16 21 H 0.04 1.61 6.95 -2.39 -0.02 1.60 16 22 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 23 H 0.00 0.02 5.92 -2.39 -0.01 0.01 16 24 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 25 H 0.06 1.88 8.08 -2.39 -0.02 1.86 16 26 H 0.07 1.80 8.05 -2.39 -0.02 1.78 16 27 H 0.09 2.02 5.84 -2.38 -0.01 2.01 16 28 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.08 2.20 8.14 -2.39 -0.02 2.19 16 31 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 32 H 0.06 2.39 5.75 -2.39 -0.01 2.37 16 33 H 0.07 2.19 8.05 -2.39 -0.02 2.17 16 Total: -1.00 -61.72 266.65 4.73 -56.99 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: 1.06 Total: 7.65 kcal Atomic # 6 Polarization: -48.01 SS G_CDS: 2.62 Total: -45.39 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: 0.28 Total: -56.46 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: -7.82 SS G_CDS: -1.26 Total: -9.09 kcal Total: -61.72 4.73 -56.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260575296.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.155 kcal (2) G-P(sol) polarization free energy of solvation -61.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds