Wall clock time and date at job start Mon Mar 30 2020 02:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47311 * 2 1 4 4 C 1.52999 * 109.47060 * 120.00041 * 2 1 3 5 5 C 1.50703 * 109.47122 * 295.00249 * 4 2 1 6 6 H 1.08002 * 119.99648 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00235 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99830 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00282 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46870 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46972 * 119.99685 * 9 7 5 12 12 H 1.48489 * 109.47479 * 240.00136 * 9 7 5 13 13 C 1.53003 * 109.47582 * 239.99887 * 2 1 3 14 14 C 1.52834 * 109.18317 * 181.30368 * 13 2 1 15 15 C 1.53096 * 109.82038 * 169.07929 * 14 13 2 16 16 S 1.81744 * 108.94652 * 62.94881 * 15 14 13 17 17 C 1.81747 * 102.22105 * 306.66914 * 16 15 14 18 18 C 1.52588 * 109.22347 * 59.99958 * 13 2 1 19 19 H 1.09003 * 109.46268 * 59.99912 * 1 2 3 20 20 H 1.09000 * 109.47258 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47004 * 300.00099 * 1 2 3 22 22 H 1.09002 * 109.47191 * 54.99538 * 4 2 1 23 23 H 1.09000 * 109.47762 * 175.00218 * 4 2 1 24 24 H 0.96998 * 119.99914 * 179.97438 * 8 7 5 25 25 H 1.09006 * 109.22043 * 300.60123 * 13 2 1 26 26 H 1.08998 * 109.57324 * 48.89639 * 14 13 2 27 27 H 1.09008 * 109.34218 * 289.11700 * 14 13 2 28 28 H 1.09002 * 109.57599 * 303.07609 * 15 14 13 29 29 H 1.09001 * 109.57403 * 182.81804 * 15 14 13 30 30 H 1.09001 * 109.57443 * 173.07081 * 17 16 15 31 31 H 1.08993 * 109.57853 * 293.33088 * 17 16 15 32 32 H 1.08996 * 109.38654 * 70.85117 * 18 13 2 33 33 H 1.08992 * 109.30892 * 311.09870 * 18 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6412 0.0570 2.4766 6 1 1.0805 0.9746 2.3756 7 6 1.9922 -0.4022 3.7284 8 7 2.6745 -1.5198 3.8513 9 14 1.4986 0.5628 5.2497 10 1 0.7421 1.7744 4.8434 11 1 0.6438 -0.2857 6.1183 12 1 2.7167 0.9666 5.9966 13 6 2.0401 -0.7213 -1.2492 14 6 3.5681 -0.7459 -1.2261 15 6 4.0886 -1.6894 -2.3136 16 16 3.5879 -1.0494 -3.9393 17 6 1.7931 -0.8472 -3.7371 18 6 1.5284 0.0024 -2.4913 19 1 -0.3632 0.5139 -0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.6053 -1.7198 1.2952 23 1 3.1263 -0.7995 1.2057 24 1 2.9218 -1.8427 4.7319 25 1 1.6658 -1.7450 -1.2505 26 1 3.9131 -1.0915 -0.2517 27 1 3.9481 0.2596 -1.4071 28 1 3.6668 -2.6838 -2.1669 29 1 5.1760 -1.7426 -2.2612 30 1 1.3807 -0.3479 -4.6139 31 1 1.3262 -1.8252 -3.6204 32 1 2.0416 0.9589 -2.5899 33 1 0.4569 0.1751 -2.3920 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260575297.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:03 Heat of formation + Delta-G solvation = -37.190311 kcal Electronic energy + Delta-G solvation = -12797.980944 eV Core-core repulsion = 10755.370872 eV Total energy + Delta-G solvation = -2042.610072 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.01749 -33.64180 -31.77628 -31.36020 -27.18798 -26.33385 -23.60667 -22.20526 -20.63247 -18.96685 -16.82447 -16.19481 -14.65127 -14.35797 -14.30800 -13.93463 -13.47106 -12.98521 -12.69189 -12.63365 -12.13075 -11.89086 -11.43450 -11.19427 -10.95330 -10.80226 -10.63077 -10.49193 -10.25092 -10.04834 -9.61231 -9.43891 -8.97888 -8.92280 -8.33056 -7.54772 -6.00215 -4.01090 1.96071 2.69251 3.30009 3.37974 3.41560 4.45475 4.90485 5.04453 5.08335 5.25810 5.35539 5.42584 5.54357 5.66382 5.81532 5.93086 6.02292 6.15037 6.22495 6.25823 6.41857 6.53162 6.59367 6.68266 7.00647 7.09248 7.18249 7.68712 7.83545 8.00182 8.44330 9.05505 9.62446 11.11116 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.055285 B = 0.007037 C = 0.006481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.342455 B = 3978.092266 C = 4319.119284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.080 4.080 3 H 0.056 0.944 4 C 0.025 3.975 5 C -0.514 4.514 6 H 0.055 0.945 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C -0.089 4.089 14 C -0.122 4.122 15 C -0.072 4.072 16 S -0.294 6.294 17 C -0.074 4.074 18 C -0.121 4.121 19 H 0.034 0.966 20 H 0.043 0.957 21 H 0.061 0.939 22 H 0.014 0.986 23 H 0.021 0.979 24 H 0.259 0.741 25 H 0.063 0.937 26 H 0.093 0.907 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.823 0.856 -12.137 12.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.098 4.098 3 H 0.075 0.925 4 C -0.012 4.012 5 C -0.552 4.552 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.107 4.107 14 C -0.161 4.161 15 C -0.220 4.220 16 S -0.069 6.069 17 C -0.222 4.222 18 C -0.159 4.159 19 H 0.053 0.947 20 H 0.062 0.938 21 H 0.080 0.920 22 H 0.032 0.968 23 H 0.040 0.960 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.112 0.888 27 H 0.088 0.912 28 H 0.099 0.901 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.114 0.945 -12.917 12.952 hybrid contribution -0.945 0.114 1.962 2.181 sum -1.059 1.059 -10.954 11.056 Atomic orbital electron populations 1.21797 0.96492 1.00735 1.00202 1.21180 0.94886 0.99214 0.94562 0.92507 1.19235 0.96295 0.95336 0.90304 1.21307 1.34568 1.08255 0.91103 0.92632 1.25012 0.95344 0.95072 0.99077 1.69967 1.39174 1.21193 1.23278 0.86598 0.78281 0.80145 0.83367 1.19791 1.21105 1.21074 1.21231 0.94637 0.99749 0.95095 1.21951 0.95993 0.99267 0.98844 1.23488 1.03858 1.01593 0.93051 1.86603 1.10178 1.87173 1.22938 1.23426 0.93224 1.03459 1.02103 1.21899 1.02272 0.98874 0.92866 0.94717 0.93786 0.92016 0.96798 0.96042 0.93150 0.91870 0.88841 0.91234 0.90099 0.88306 0.88539 0.90209 0.91075 0.90455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 8.67 37.16 0.32 -2.14 16 2 C -0.08 -1.56 1.92 -90.62 -0.17 -1.73 16 3 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 4 C 0.03 0.62 4.23 -27.88 -0.12 0.50 16 5 C -0.51 -14.13 8.41 -34.44 -0.29 -14.42 16 6 H 0.06 1.50 7.06 -52.49 -0.37 1.13 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 9 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 C -0.09 -1.44 1.53 -90.91 -0.14 -1.58 16 14 C -0.12 -1.95 4.95 -26.77 -0.13 -2.08 16 15 C -0.07 -1.01 6.44 37.21 0.24 -0.77 16 16 S -0.29 -4.11 22.33 -107.50 -2.40 -6.51 16 17 C -0.07 -0.92 6.45 37.21 0.24 -0.68 16 18 C -0.12 -1.65 4.95 -26.89 -0.13 -1.79 16 19 H 0.03 0.53 6.18 -51.93 -0.32 0.21 16 20 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 21 H 0.06 1.22 6.95 -51.93 -0.36 0.86 16 22 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 23 H 0.02 0.56 5.90 -51.93 -0.31 0.25 16 24 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 25 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 26 H 0.09 1.69 5.74 -51.93 -0.30 1.40 16 27 H 0.07 1.11 8.06 -51.92 -0.42 0.69 16 28 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 30 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 1.00 8.06 -51.93 -0.42 0.58 16 33 H 0.08 1.01 5.86 -51.93 -0.30 0.70 16 LS Contribution 266.68 15.07 4.02 4.02 Total: -1.00 -28.66 266.68 -8.26 -36.92 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -5.31 Total: -1.86 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: -0.28 Total: -23.21 kcal Atomic # 7 Polarization: -26.57 SS G_CDS: 0.74 Total: -25.83 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -4.11 SS G_CDS: -2.40 Total: -6.51 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -28.66 -8.26 -36.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260575297.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.274 kcal (2) G-P(sol) polarization free energy of solvation -28.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds