Wall clock time and date at job start Mon Mar 30 2020 02:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47311 * 2 1 4 4 C 1.52999 * 109.47060 * 120.00041 * 2 1 3 5 5 C 1.50703 * 109.47122 * 295.00249 * 4 2 1 6 6 H 1.08002 * 119.99648 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00235 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99830 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00282 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46870 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46972 * 119.99685 * 9 7 5 12 12 H 1.48489 * 109.47479 * 240.00136 * 9 7 5 13 13 C 1.53003 * 109.47582 * 239.99887 * 2 1 3 14 14 C 1.52834 * 109.18317 * 181.30368 * 13 2 1 15 15 C 1.53096 * 109.82038 * 169.07929 * 14 13 2 16 16 S 1.81744 * 108.94652 * 62.94881 * 15 14 13 17 17 C 1.81747 * 102.22105 * 306.66914 * 16 15 14 18 18 C 1.52588 * 109.22347 * 59.99958 * 13 2 1 19 19 H 1.09003 * 109.46268 * 59.99912 * 1 2 3 20 20 H 1.09000 * 109.47258 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47004 * 300.00099 * 1 2 3 22 22 H 1.09002 * 109.47191 * 54.99538 * 4 2 1 23 23 H 1.09000 * 109.47762 * 175.00218 * 4 2 1 24 24 H 0.96998 * 119.99914 * 179.97438 * 8 7 5 25 25 H 1.09006 * 109.22043 * 300.60123 * 13 2 1 26 26 H 1.08998 * 109.57324 * 48.89639 * 14 13 2 27 27 H 1.09008 * 109.34218 * 289.11700 * 14 13 2 28 28 H 1.09002 * 109.57599 * 303.07609 * 15 14 13 29 29 H 1.09001 * 109.57403 * 182.81804 * 15 14 13 30 30 H 1.09001 * 109.57443 * 173.07081 * 17 16 15 31 31 H 1.08993 * 109.57853 * 293.33088 * 17 16 15 32 32 H 1.08996 * 109.38654 * 70.85117 * 18 13 2 33 33 H 1.08992 * 109.30892 * 311.09870 * 18 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6412 0.0570 2.4766 6 1 1.0805 0.9746 2.3756 7 6 1.9922 -0.4022 3.7284 8 7 2.6745 -1.5198 3.8513 9 14 1.4986 0.5628 5.2497 10 1 0.7421 1.7744 4.8434 11 1 0.6438 -0.2857 6.1183 12 1 2.7167 0.9666 5.9966 13 6 2.0401 -0.7213 -1.2492 14 6 3.5681 -0.7459 -1.2261 15 6 4.0886 -1.6894 -2.3136 16 16 3.5879 -1.0494 -3.9393 17 6 1.7931 -0.8472 -3.7371 18 6 1.5284 0.0024 -2.4913 19 1 -0.3632 0.5139 -0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.6053 -1.7198 1.2952 23 1 3.1263 -0.7995 1.2057 24 1 2.9218 -1.8427 4.7319 25 1 1.6658 -1.7450 -1.2505 26 1 3.9131 -1.0915 -0.2517 27 1 3.9481 0.2596 -1.4071 28 1 3.6668 -2.6838 -2.1669 29 1 5.1760 -1.7426 -2.2612 30 1 1.3807 -0.3479 -4.6139 31 1 1.3262 -1.8252 -3.6204 32 1 2.0416 0.9589 -2.5899 33 1 0.4569 0.1751 -2.3920 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260575297.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:03 Heat of formation + Delta-G solvation = -51.916532 kcal Electronic energy + Delta-G solvation = -12798.619521 eV Core-core repulsion = 10755.370872 eV Total energy + Delta-G solvation = -2043.248649 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.42558 -35.46064 -33.56863 -32.53216 -29.06026 -27.65997 -25.37566 -23.51786 -22.06183 -20.51531 -18.58087 -17.68777 -16.56332 -15.75893 -15.53622 -15.37104 -14.71399 -14.49008 -14.13288 -13.84001 -13.74706 -13.45213 -13.18426 -12.78367 -12.60877 -12.28712 -12.26569 -11.96066 -11.84417 -11.65573 -11.26308 -10.90386 -10.68478 -10.54182 -10.41242 -8.64761 -8.17052 -6.25205 0.89186 1.38522 1.39647 1.51740 1.61795 2.41745 3.16506 3.68509 3.87792 3.89853 4.11005 4.29457 4.37458 4.39921 4.59194 4.63974 4.72449 4.82395 4.89550 4.99937 5.07345 5.14685 5.19667 5.25903 5.42018 5.48167 5.53519 5.65051 5.89302 5.92462 6.32406 6.91897 7.42750 8.94686 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.055285 B = 0.007037 C = 0.006481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.342455 B = 3978.092266 C = 4319.119284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.073 4.073 3 H 0.052 0.948 4 C 0.031 3.969 5 C -0.529 4.529 6 H 0.058 0.942 7 C -0.002 4.002 8 N -0.934 5.934 9 Si 0.956 3.044 10 H -0.263 1.263 11 H -0.281 1.281 12 H -0.280 1.280 13 C -0.082 4.082 14 C -0.118 4.118 15 C -0.068 4.068 16 S -0.304 6.304 17 C -0.068 4.068 18 C -0.113 4.113 19 H 0.071 0.929 20 H 0.040 0.960 21 H 0.041 0.959 22 H -0.016 1.016 23 H 0.001 0.999 24 H 0.261 0.739 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.108 0.892 30 H 0.121 0.879 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.787 1.829 -13.287 13.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.092 4.092 3 H 0.070 0.930 4 C -0.006 4.006 5 C -0.567 4.567 6 H 0.076 0.924 7 C -0.199 4.199 8 N -0.575 5.575 9 Si 0.782 3.218 10 H -0.187 1.187 11 H -0.206 1.206 12 H -0.206 1.206 13 C -0.101 4.101 14 C -0.157 4.157 15 C -0.216 4.216 16 S -0.078 6.078 17 C -0.216 4.216 18 C -0.151 4.151 19 H 0.090 0.910 20 H 0.059 0.941 21 H 0.060 0.940 22 H 0.003 0.997 23 H 0.019 0.981 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.101 0.899 29 H 0.126 0.874 30 H 0.139 0.861 31 H 0.105 0.895 32 H 0.090 0.910 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.084 1.926 -14.080 14.252 hybrid contribution -0.632 -0.203 2.305 2.399 sum -1.716 1.723 -11.774 12.023 Atomic orbital electron populations 1.21739 0.95116 1.00831 1.01051 1.21032 0.96003 0.98421 0.93711 0.92986 1.19125 0.94946 0.94148 0.92394 1.21735 1.34164 1.08459 0.92335 0.92358 1.25902 0.95392 0.96070 1.02501 1.70097 1.40469 1.22876 1.24092 0.85522 0.78053 0.78951 0.79298 1.18668 1.20648 1.20630 1.21134 0.94620 0.99315 0.94997 1.21847 0.96059 0.99664 0.98134 1.23397 1.04545 1.00992 0.92637 1.86672 1.11858 1.87139 1.22171 1.23485 0.91887 1.03906 1.02290 1.21808 1.02892 0.98609 0.91802 0.90991 0.94057 0.94008 0.99734 0.98078 0.93046 0.92491 0.91859 0.91278 0.89935 0.87352 0.86079 0.89466 0.91012 0.89032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.57 8.67 71.98 0.62 -3.95 16 2 C -0.07 -2.84 1.92 -10.79 -0.02 -2.86 16 3 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 4 C 0.03 1.57 4.23 29.85 0.13 1.69 16 5 C -0.53 -29.53 8.41 25.60 0.22 -29.32 16 6 H 0.06 3.15 7.06 -2.91 -0.02 3.13 16 7 C 0.00 -0.09 5.46 84.65 0.46 0.38 16 8 N -0.93 -56.69 13.29 21.45 0.28 -56.41 16 9 Si 0.96 44.32 29.54 68.60 2.03 46.35 16 10 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 13 C -0.08 -2.60 1.53 -10.98 -0.02 -2.62 16 14 C -0.12 -3.79 4.95 30.57 0.15 -3.64 16 15 C -0.07 -1.84 6.44 72.01 0.46 -1.37 16 16 S -0.30 -7.82 22.33 -56.49 -1.26 -9.08 16 17 C -0.07 -1.47 6.45 72.01 0.46 -1.00 16 18 C -0.11 -2.77 4.95 30.49 0.15 -2.62 16 19 H 0.07 1.98 6.18 -2.39 -0.01 1.96 16 20 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 21 H 0.04 1.61 6.95 -2.39 -0.02 1.59 16 22 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 23 H 0.00 0.06 5.90 -2.39 -0.01 0.04 16 24 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 25 H 0.06 1.88 8.08 -2.38 -0.02 1.86 16 26 H 0.06 2.41 5.74 -2.39 -0.01 2.39 16 27 H 0.07 2.19 8.06 -2.38 -0.02 2.17 16 28 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 30 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.07 1.80 8.06 -2.39 -0.02 1.78 16 33 H 0.09 2.02 5.86 -2.39 -0.01 2.01 16 Total: -1.00 -61.75 266.68 4.73 -57.02 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: 1.06 Total: 7.43 kcal Atomic # 6 Polarization: -47.93 SS G_CDS: 2.62 Total: -45.31 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: 0.28 Total: -56.41 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 16 Polarization: -7.82 SS G_CDS: -1.26 Total: -9.08 kcal Total: -61.75 4.73 -57.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260575297.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.100 kcal (2) G-P(sol) polarization free energy of solvation -61.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds