Wall clock time and date at job start Mon Mar 30 2020 02:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47493 * 2 1 4 4 C 1.53000 * 109.47345 * 239.99702 * 2 1 3 5 5 C 1.50703 * 109.46912 * 65.00249 * 4 2 1 6 6 H 1.07996 * 119.99751 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00001 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99923 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 120.00006 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47093 * 90.00088 * 9 7 5 11 11 H 1.48495 * 109.46891 * 210.00496 * 9 7 5 12 12 H 1.48504 * 109.47189 * 330.00185 * 9 7 5 13 13 C 1.53006 * 109.47155 * 119.99883 * 2 1 3 14 14 H 1.08996 * 109.57395 * 179.74368 * 13 2 1 15 15 C 1.53092 * 109.57463 * 300.00111 * 13 2 1 16 16 C 1.52585 * 109.95718 * 182.83258 * 15 13 2 17 17 C 1.52586 * 110.72322 * 289.32281 * 16 15 13 18 18 C 1.53094 * 109.95443 * 70.67314 * 17 16 15 19 19 S 1.81741 * 108.84401 * 296.97407 * 18 17 16 20 20 H 1.09004 * 109.47135 * 300.00168 * 1 2 3 21 21 H 1.09002 * 109.47179 * 59.99882 * 1 2 3 22 22 H 1.08993 * 109.47639 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47398 * 185.00327 * 4 2 1 24 24 H 1.09001 * 109.47194 * 305.00507 * 4 2 1 25 25 H 0.97000 * 119.99684 * 180.02562 * 8 7 5 26 26 H 1.09000 * 109.39059 * 302.97727 * 15 13 2 27 27 H 1.09000 * 109.39281 * 62.78028 * 15 13 2 28 28 H 1.08999 * 109.22850 * 49.63969 * 16 15 13 29 29 H 1.09000 * 109.22631 * 169.04507 * 16 15 13 30 30 H 1.08997 * 109.39083 * 190.82321 * 17 16 15 31 31 H 1.09001 * 109.38771 * 310.62371 * 17 16 15 32 32 H 1.08997 * 109.57599 * 56.78543 * 18 17 16 33 33 H 1.09000 * 109.57174 * 177.03955 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0807 0.9745 -2.3756 7 6 1.9924 -0.4023 -3.7283 8 7 1.6450 0.2772 -4.7993 9 14 2.9628 -1.9890 -3.9028 10 1 2.0236 -3.1333 -4.0189 11 1 3.8109 -1.9191 -5.1196 12 1 3.8252 -2.1757 -2.7083 13 6 2.0400 -0.7213 1.2493 14 1 3.1299 -0.7262 1.2487 15 6 1.5309 -0.0014 2.5009 16 6 2.0918 -0.6718 3.7516 17 6 1.4535 -2.0416 3.9623 18 6 1.9526 -3.0202 2.8961 19 16 1.4200 -2.4297 1.2619 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 3.1263 -0.7996 -1.2055 24 1 1.6053 -1.7198 -1.2951 25 1 1.8916 -0.0462 -5.6800 26 1 1.8507 1.0403 2.4744 27 1 0.4421 -0.0452 2.5259 28 1 3.1697 -0.7911 3.6422 29 1 1.8864 -0.0435 4.6183 30 1 1.7194 -2.4166 4.9506 31 1 0.3697 -1.9509 3.8893 32 1 3.0409 -3.0721 2.9288 33 1 1.5341 -4.0091 3.0834 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260577565.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:05 Heat of formation + Delta-G solvation = -34.139199 kcal Electronic energy + Delta-G solvation = -12809.709771 eV Core-core repulsion = 10767.232006 eV Total energy + Delta-G solvation = -2042.477766 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -37.45043 -35.15279 -32.35873 -30.14398 -27.55772 -26.54594 -23.94750 -21.81441 -20.45405 -19.27788 -16.79549 -16.31553 -14.93356 -14.79663 -14.22425 -13.79099 -13.61555 -13.43659 -12.62377 -12.48587 -12.17847 -11.70126 -11.54916 -11.35361 -11.11329 -10.79870 -10.78125 -10.57999 -10.19655 -10.08106 -9.67365 -9.40378 -9.07055 -8.98966 -8.45662 -7.22131 -5.97749 -3.94398 2.10409 2.94176 3.38447 3.44827 3.51385 4.53082 4.69718 4.79709 4.93231 5.12149 5.33625 5.36999 5.40669 5.58612 5.66223 5.76642 5.87664 5.94581 6.00331 6.08484 6.12161 6.26563 6.40317 6.49360 6.84043 6.97494 7.15443 7.35878 7.53287 7.87065 8.60348 9.07064 9.65777 11.15531 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.046484 B = 0.008812 C = 0.007952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.216617 B = 3176.650915 C = 3520.196133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.060 4.060 3 H 0.073 0.927 4 C -0.009 4.009 5 C -0.514 4.514 6 H 0.073 0.927 7 C 0.066 3.934 8 N -0.906 5.906 9 Si 0.876 3.124 10 H -0.277 1.277 11 H -0.290 1.290 12 H -0.264 1.264 13 C -0.041 4.041 14 H 0.080 0.920 15 C -0.119 4.119 16 C -0.129 4.129 17 C -0.118 4.118 18 C -0.100 4.100 19 S -0.243 6.243 20 H 0.036 0.964 21 H 0.066 0.934 22 H 0.057 0.943 23 H 0.014 0.986 24 H 0.023 0.977 25 H 0.262 0.738 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.584 -3.804 17.036 17.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.080 4.080 3 H 0.091 0.909 4 C -0.046 4.046 5 C -0.552 4.552 6 H 0.091 0.909 7 C -0.134 4.134 8 N -0.545 5.545 9 Si 0.703 3.297 10 H -0.202 1.202 11 H -0.216 1.216 12 H -0.189 1.189 13 C -0.170 4.170 14 H 0.098 0.902 15 C -0.158 4.158 16 C -0.166 4.166 17 C -0.157 4.157 18 C -0.248 4.248 19 S -0.016 6.016 20 H 0.055 0.945 21 H 0.085 0.915 22 H 0.076 0.924 23 H 0.032 0.968 24 H 0.041 0.959 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.096 0.904 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.045 -4.379 16.047 16.634 hybrid contribution 1.290 -0.238 0.658 1.467 sum 1.335 -4.617 16.705 17.383 Atomic orbital electron populations 1.21826 0.95181 1.01846 1.00622 1.20948 0.96279 0.98691 0.92036 0.90906 1.19663 0.95896 0.96213 0.92872 1.21141 1.35353 1.09472 0.89199 0.90907 1.24999 0.95615 0.96907 0.95921 1.69917 1.47309 1.39330 0.97983 0.86824 0.80799 0.84450 0.77592 1.20240 1.21609 1.18856 1.23505 1.01797 0.92605 0.99109 0.90193 1.21868 1.01935 0.99360 0.92673 1.21544 1.00366 0.96272 0.98434 1.21686 1.01420 0.94770 0.97836 1.23479 1.03419 1.01724 0.96186 1.87237 1.77097 1.16312 1.21001 0.94511 0.91528 0.92416 0.96810 0.95891 0.92876 0.91061 0.90358 0.92119 0.91608 0.91676 0.90806 0.90595 0.88515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 8.41 37.15 0.31 -2.30 16 2 C -0.06 -1.19 2.17 -90.62 -0.20 -1.39 16 3 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 4 C -0.01 -0.22 3.19 -27.88 -0.09 -0.31 16 5 C -0.51 -14.72 8.96 -34.44 -0.31 -15.03 16 6 H 0.07 2.22 7.30 -52.49 -0.38 1.84 16 7 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 8 N -0.91 -28.36 13.96 55.43 0.77 -27.59 16 9 Si 0.88 22.50 27.47 -169.99 -4.67 17.83 16 10 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 12 H -0.26 -6.58 6.54 56.52 0.37 -6.21 16 13 C -0.04 -0.68 2.36 -26.68 -0.06 -0.75 16 14 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 15 C -0.12 -1.57 4.61 -26.90 -0.12 -1.70 16 16 C -0.13 -1.41 5.61 -27.16 -0.15 -1.56 16 17 C -0.12 -1.26 5.75 -26.89 -0.15 -1.41 16 18 C -0.10 -1.23 6.45 37.21 0.24 -0.99 16 19 S -0.24 -4.08 18.87 -107.50 -2.03 -6.11 16 20 H 0.04 0.59 6.50 -51.93 -0.34 0.25 16 21 H 0.07 1.41 6.95 -51.93 -0.36 1.05 16 22 H 0.06 1.12 6.90 -51.93 -0.36 0.76 16 23 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 24 H 0.02 0.58 6.58 -51.93 -0.34 0.24 16 25 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 26 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.08 1.05 6.50 -51.93 -0.34 0.71 16 28 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.81 8.05 -51.93 -0.42 0.40 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 263.39 15.07 3.97 3.97 Total: -1.00 -30.54 263.39 -8.04 -38.59 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: -5.46 Total: -3.12 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: -0.63 Total: -23.56 kcal Atomic # 7 Polarization: -28.36 SS G_CDS: 0.77 Total: -27.59 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.67 Total: 17.83 kcal Atomic # 16 Polarization: -4.08 SS G_CDS: -2.03 Total: -6.11 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -30.54 -8.04 -38.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260577565.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.446 kcal (2) G-P(sol) polarization free energy of solvation -30.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds