Wall clock time and date at job start Mon Mar 30 2020 02:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47493 * 2 1 4 4 C 1.53000 * 109.47345 * 239.99702 * 2 1 3 5 5 C 1.50703 * 109.46912 * 65.00249 * 4 2 1 6 6 H 1.07996 * 119.99751 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00001 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99923 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 120.00006 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47093 * 90.00088 * 9 7 5 11 11 H 1.48495 * 109.46891 * 210.00496 * 9 7 5 12 12 H 1.48504 * 109.47189 * 330.00185 * 9 7 5 13 13 C 1.53006 * 109.47155 * 119.99883 * 2 1 3 14 14 H 1.08996 * 109.57395 * 179.74368 * 13 2 1 15 15 C 1.53092 * 109.57463 * 300.00111 * 13 2 1 16 16 C 1.52585 * 109.95718 * 182.83258 * 15 13 2 17 17 C 1.52586 * 110.72322 * 289.32281 * 16 15 13 18 18 C 1.53094 * 109.95443 * 70.67314 * 17 16 15 19 19 S 1.81741 * 108.84401 * 296.97407 * 18 17 16 20 20 H 1.09004 * 109.47135 * 300.00168 * 1 2 3 21 21 H 1.09002 * 109.47179 * 59.99882 * 1 2 3 22 22 H 1.08993 * 109.47639 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47398 * 185.00327 * 4 2 1 24 24 H 1.09001 * 109.47194 * 305.00507 * 4 2 1 25 25 H 0.97000 * 119.99684 * 180.02562 * 8 7 5 26 26 H 1.09000 * 109.39059 * 302.97727 * 15 13 2 27 27 H 1.09000 * 109.39281 * 62.78028 * 15 13 2 28 28 H 1.08999 * 109.22850 * 49.63969 * 16 15 13 29 29 H 1.09000 * 109.22631 * 169.04507 * 16 15 13 30 30 H 1.08997 * 109.39083 * 190.82321 * 17 16 15 31 31 H 1.09001 * 109.38771 * 310.62371 * 17 16 15 32 32 H 1.08997 * 109.57599 * 56.78543 * 18 17 16 33 33 H 1.09000 * 109.57174 * 177.03955 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0807 0.9745 -2.3756 7 6 1.9924 -0.4023 -3.7283 8 7 1.6450 0.2772 -4.7993 9 14 2.9628 -1.9890 -3.9028 10 1 2.0236 -3.1333 -4.0189 11 1 3.8109 -1.9191 -5.1196 12 1 3.8252 -2.1757 -2.7083 13 6 2.0400 -0.7213 1.2493 14 1 3.1299 -0.7262 1.2487 15 6 1.5309 -0.0014 2.5009 16 6 2.0918 -0.6718 3.7516 17 6 1.4535 -2.0416 3.9623 18 6 1.9526 -3.0202 2.8961 19 16 1.4200 -2.4297 1.2619 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 3.1263 -0.7996 -1.2055 24 1 1.6053 -1.7198 -1.2951 25 1 1.8916 -0.0462 -5.6800 26 1 1.8507 1.0403 2.4744 27 1 0.4421 -0.0452 2.5259 28 1 3.1697 -0.7911 3.6422 29 1 1.8864 -0.0435 4.6183 30 1 1.7194 -2.4166 4.9506 31 1 0.3697 -1.9509 3.8893 32 1 3.0409 -3.0721 2.9288 33 1 1.5341 -4.0091 3.0834 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260577565.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:05 Heat of formation + Delta-G solvation = -51.460271 kcal Electronic energy + Delta-G solvation = -12810.460869 eV Core-core repulsion = 10767.232006 eV Total energy + Delta-G solvation = -2043.228864 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.71199 -36.51055 -34.45495 -31.51450 -29.28208 -27.82040 -25.51578 -23.28048 -21.44749 -20.92762 -18.96928 -17.52536 -16.50564 -16.07076 -15.79035 -15.27422 -14.88142 -14.65393 -14.35732 -13.87059 -13.64891 -13.25056 -13.04955 -12.74603 -12.56178 -12.38001 -12.09828 -11.88698 -11.76999 -11.66871 -11.36897 -11.12447 -10.93144 -10.76377 -10.28974 -8.51645 -8.27983 -6.29159 0.92329 1.34073 1.34545 1.47555 1.78572 2.36140 3.07805 3.71259 3.86277 3.94191 4.07074 4.23537 4.28943 4.41820 4.52443 4.68338 4.70620 4.84298 4.86755 5.02326 5.10208 5.12033 5.15588 5.19218 5.31024 5.37848 5.41396 5.50879 5.66864 5.72543 6.31510 6.77608 7.34380 8.88553 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.046484 B = 0.008812 C = 0.007952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.216617 B = 3176.650915 C = 3520.196133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.059 4.059 3 H 0.068 0.932 4 C -0.001 4.001 5 C -0.518 4.518 6 H 0.039 0.961 7 C 0.006 3.994 8 N -0.951 5.951 9 Si 0.941 3.059 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.251 1.251 13 C -0.028 4.028 14 H 0.077 0.923 15 C -0.115 4.115 16 C -0.125 4.125 17 C -0.115 4.115 18 C -0.081 4.081 19 S -0.312 6.312 20 H 0.068 0.932 21 H 0.034 0.966 22 H 0.052 0.948 23 H 0.010 0.990 24 H 0.018 0.982 25 H 0.265 0.735 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.409 -4.997 19.763 20.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.079 4.079 3 H 0.086 0.914 4 C -0.039 4.039 5 C -0.556 4.556 6 H 0.057 0.943 7 C -0.190 4.190 8 N -0.592 5.592 9 Si 0.765 3.235 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.175 1.175 13 C -0.157 4.157 14 H 0.096 0.904 15 C -0.154 4.154 16 C -0.162 4.162 17 C -0.154 4.154 18 C -0.229 4.229 19 S -0.086 6.086 20 H 0.087 0.913 21 H 0.053 0.947 22 H 0.071 0.929 23 H 0.028 0.972 24 H 0.036 0.964 25 H 0.073 0.927 26 H 0.097 0.903 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.107 0.893 30 H 0.112 0.888 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.870 -5.567 18.793 19.619 hybrid contribution 0.993 0.172 -0.156 1.020 sum 1.863 -5.395 18.637 19.492 Atomic orbital electron populations 1.21709 0.94736 1.01469 1.00585 1.20832 0.96661 0.98350 0.92022 0.91376 1.19548 0.95472 0.95727 0.93151 1.21474 1.34293 1.08670 0.91178 0.94288 1.25897 0.96940 1.00565 0.95628 1.70056 1.49106 1.41436 0.98645 0.85786 0.79552 0.79989 0.78160 1.19658 1.20809 1.17463 1.23311 1.01412 0.92180 0.98774 0.90419 1.21844 1.01830 0.99621 0.92138 1.21533 1.00275 0.96653 0.97788 1.21688 1.01156 0.94121 0.98422 1.23562 1.03845 1.02609 0.92896 1.87415 1.77750 1.17384 1.26012 0.91292 0.94720 0.92930 0.97213 0.96410 0.92657 0.90262 0.90529 0.91943 0.89327 0.88780 0.91117 0.89857 0.87093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.87 8.41 71.98 0.61 -4.27 16 2 C -0.06 -2.34 2.17 -10.79 -0.02 -2.37 16 3 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 4 C 0.00 -0.07 3.19 29.85 0.10 0.03 16 5 C -0.52 -30.60 8.96 25.60 0.23 -30.37 16 6 H 0.04 2.50 7.30 -2.91 -0.02 2.48 16 7 C 0.01 0.37 5.47 84.65 0.46 0.83 16 8 N -0.95 -61.18 13.96 21.45 0.30 -60.88 16 9 Si 0.94 46.76 27.47 68.60 1.88 48.65 16 10 H -0.27 -13.17 7.11 99.48 0.71 -12.47 16 11 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 12 H -0.25 -11.82 6.54 99.48 0.65 -11.17 16 13 C -0.03 -0.89 2.36 30.63 0.07 -0.81 16 14 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 15 C -0.12 -2.72 4.61 30.49 0.14 -2.58 16 16 C -0.13 -2.23 5.61 30.32 0.17 -2.06 16 17 C -0.12 -1.96 5.75 30.49 0.18 -1.78 16 18 C -0.08 -1.73 6.45 72.01 0.46 -1.26 16 19 S -0.31 -9.99 18.87 -56.49 -1.07 -11.06 16 20 H 0.07 2.14 6.50 -2.38 -0.02 2.13 16 21 H 0.03 1.51 6.95 -2.39 -0.02 1.49 16 22 H 0.05 2.05 6.90 -2.39 -0.02 2.03 16 23 H 0.01 0.47 7.20 -2.39 -0.02 0.46 16 24 H 0.02 0.89 6.58 -2.39 -0.02 0.88 16 25 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 26 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.08 1.84 6.50 -2.39 -0.02 1.82 16 28 H 0.06 1.12 8.08 -2.39 -0.02 1.11 16 29 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 1.29 8.05 -2.39 -0.02 1.27 16 32 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -67.27 263.39 4.51 -62.76 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: 1.00 Total: 5.19 kcal Atomic # 6 Polarization: -47.05 SS G_CDS: 2.39 Total: -44.66 kcal Atomic # 7 Polarization: -61.18 SS G_CDS: 0.30 Total: -60.88 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 1.88 Total: 48.65 kcal Atomic # 16 Polarization: -9.99 SS G_CDS: -1.07 Total: -11.06 kcal Total: -67.27 4.51 -62.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260577565.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.298 kcal (2) G-P(sol) polarization free energy of solvation -67.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds