Wall clock time and date at job start Mon Mar 30 2020 02:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 C 1.50703 * 109.46967 * 294.99707 * 4 2 1 6 6 H 1.07996 * 119.99755 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00135 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99773 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99975 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47559 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47225 * 120.00279 * 9 7 5 12 12 H 1.48505 * 109.47115 * 239.99990 * 9 7 5 13 13 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 14 14 H 1.09000 * 109.58156 * 185.00214 * 13 2 1 15 15 C 1.53102 * 109.57274 * 64.74339 * 13 2 1 16 16 C 1.52590 * 109.95665 * 177.16915 * 15 13 2 17 17 C 1.52578 * 110.72333 * 70.67692 * 16 15 13 18 18 C 1.53106 * 109.95928 * 289.32289 * 17 16 15 19 19 S 1.81744 * 109.57772 * 305.26212 * 13 2 1 20 20 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 21 21 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 22 22 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 24 24 H 1.09000 * 109.46904 * 175.00284 * 4 2 1 25 25 H 0.97000 * 120.00259 * 179.97438 * 8 7 5 26 26 H 1.09001 * 109.39132 * 297.31329 * 15 13 2 27 27 H 1.08997 * 109.38752 * 57.11882 * 15 13 2 28 28 H 1.08998 * 109.22529 * 190.99452 * 16 15 13 29 29 H 1.09003 * 109.22488 * 310.39869 * 16 15 13 30 30 H 1.09000 * 109.39454 * 49.47357 * 17 16 15 31 31 H 1.09007 * 109.38924 * 169.27704 * 17 16 15 32 32 H 1.08994 * 109.57814 * 182.83455 * 18 17 16 33 33 H 1.08997 * 109.57315 * 303.09725 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6414 0.0570 2.4766 6 1 1.0800 0.9741 2.3757 7 6 1.9923 -0.4022 3.7284 8 7 2.6755 -1.5193 3.8512 9 14 1.4976 0.5622 5.2497 10 1 0.7403 1.7733 4.8435 11 1 0.6433 -0.2871 6.1180 12 1 2.7154 0.9668 5.9970 13 6 2.0400 -0.7213 -1.2492 14 1 3.1263 -0.8005 -1.2073 15 6 1.6307 0.0641 -2.4980 16 6 2.1949 -0.6099 -3.7453 17 6 1.4752 -1.9270 -4.0196 18 6 1.8647 -2.9652 -2.9638 19 16 1.3110 -2.3840 -1.3326 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.6054 -1.7199 1.2952 24 1 3.1263 -0.7995 1.2056 25 1 2.9227 -1.8423 4.7318 26 1 0.5432 0.0966 -2.5648 27 1 2.0197 1.0801 -2.4301 28 1 2.0674 0.0536 -4.6006 29 1 3.2570 -0.8058 -3.5981 30 1 0.3979 -1.7645 -3.9870 31 1 1.7561 -2.2942 -5.0068 32 1 1.3869 -3.9173 -3.1941 33 1 2.9473 -3.0917 -2.9581 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260577567.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:06 Heat of formation + Delta-G solvation = -54.033728 kcal Electronic energy + Delta-G solvation = -12747.038470 eV Core-core repulsion = 10703.698013 eV Total energy + Delta-G solvation = -2043.340457 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.64675 -36.47922 -34.42865 -31.31071 -28.85565 -27.80772 -25.69460 -23.49307 -21.46504 -20.93232 -18.50421 -17.51576 -16.53879 -16.17170 -15.78940 -15.07629 -14.73217 -14.65435 -14.30762 -13.65126 -13.56549 -13.19597 -12.93450 -12.71347 -12.61649 -12.34281 -12.21741 -11.97337 -11.79401 -11.68515 -11.31626 -11.07305 -10.81732 -10.55645 -10.24316 -8.47993 -8.15755 -6.25710 0.95192 1.39180 1.39858 1.52740 1.81435 2.42170 3.17162 3.73957 3.88125 3.95062 4.09589 4.26532 4.30962 4.45163 4.55560 4.70008 4.74609 4.86103 4.92046 5.02795 5.12149 5.14898 5.17401 5.27383 5.38385 5.42587 5.51619 5.54827 5.81710 5.92182 6.29331 6.91339 7.42195 8.96251 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.058075 B = 0.007509 C = 0.007105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.022500 B = 3728.081768 C = 3939.681514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.065 4.065 3 H 0.069 0.931 4 C 0.037 3.963 5 C -0.531 4.531 6 H 0.062 0.938 7 C -0.003 4.003 8 N -0.935 5.935 9 Si 0.962 3.038 10 H -0.260 1.260 11 H -0.281 1.281 12 H -0.279 1.279 13 C -0.027 4.027 14 H 0.065 0.935 15 C -0.113 4.113 16 C -0.126 4.126 17 C -0.113 4.113 18 C -0.084 4.084 19 S -0.311 6.311 20 H 0.068 0.932 21 H 0.043 0.957 22 H 0.046 0.954 23 H -0.001 1.001 24 H -0.021 1.021 25 H 0.261 0.739 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.110 0.890 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.449 1.787 -16.153 16.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.084 4.084 3 H 0.087 0.913 4 C -0.001 4.001 5 C -0.569 4.569 6 H 0.080 0.920 7 C -0.201 4.201 8 N -0.575 5.575 9 Si 0.786 3.214 10 H -0.184 1.184 11 H -0.207 1.207 12 H -0.205 1.205 13 C -0.156 4.156 14 H 0.084 0.916 15 C -0.152 4.152 16 C -0.163 4.163 17 C -0.152 4.152 18 C -0.232 4.232 19 S -0.084 6.084 20 H 0.087 0.913 21 H 0.062 0.938 22 H 0.065 0.935 23 H 0.017 0.983 24 H -0.003 1.003 25 H 0.070 0.930 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.110 0.890 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.113 0.887 32 H 0.129 0.871 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.997 1.126 -15.278 15.609 hybrid contribution 0.900 0.577 0.538 1.196 sum -2.097 1.703 -14.740 14.986 Atomic orbital electron populations 1.21685 0.94457 1.01225 1.00844 1.20980 0.96827 0.98271 0.92328 0.91271 1.19010 0.93651 0.95050 0.92344 1.21711 1.34433 1.08558 0.92194 0.92000 1.25973 0.95295 0.96085 1.02706 1.70136 1.40324 1.22971 1.24111 0.85449 0.78072 0.78884 0.78954 1.18415 1.20651 1.20476 1.23290 1.00421 0.92688 0.99192 0.91649 1.21832 1.02265 0.99038 0.92028 1.21541 0.99748 0.97151 0.97868 1.21682 1.01343 0.93916 0.98271 1.23578 1.03848 1.02476 0.93261 1.87502 1.72177 1.22005 1.26763 0.91306 0.93801 0.93518 0.98314 1.00262 0.93033 0.90324 0.90173 0.89024 0.92335 0.90891 0.88715 0.87125 0.90310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.82 8.43 71.98 0.61 -4.21 16 2 C -0.06 -2.71 2.12 -10.79 -0.02 -2.73 16 3 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 4 C 0.04 2.00 4.19 29.85 0.13 2.12 16 5 C -0.53 -30.83 8.41 25.60 0.22 -30.61 16 6 H 0.06 3.43 7.05 -2.91 -0.02 3.41 16 7 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 8 N -0.93 -58.98 13.29 21.45 0.28 -58.70 16 9 Si 0.96 45.50 29.54 68.60 2.03 47.53 16 10 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 13 C -0.03 -0.95 2.30 30.63 0.07 -0.88 16 14 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 15 C -0.11 -2.87 4.73 30.49 0.14 -2.72 16 16 C -0.13 -2.50 5.61 30.32 0.17 -2.33 16 17 C -0.11 -2.16 5.75 30.49 0.18 -1.98 16 18 C -0.08 -2.05 6.45 72.02 0.46 -1.58 16 19 S -0.31 -11.16 18.89 -56.49 -1.07 -12.23 16 20 H 0.07 2.15 6.62 -2.39 -0.02 2.13 16 21 H 0.04 1.81 6.95 -2.39 -0.02 1.79 16 22 H 0.05 1.91 6.72 -2.38 -0.02 1.90 16 23 H 0.00 -0.09 7.33 -2.39 -0.02 -0.11 16 24 H -0.02 -1.26 8.14 -2.39 -0.02 -1.28 16 25 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 26 H 0.08 1.97 6.61 -2.39 -0.02 1.96 16 27 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.06 1.22 8.08 -2.39 -0.02 1.20 16 30 H 0.07 1.44 8.06 -2.39 -0.02 1.42 16 31 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -67.13 267.37 4.71 -62.42 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: 1.05 Total: 5.65 kcal Atomic # 6 Polarization: -47.09 SS G_CDS: 2.41 Total: -44.68 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: 0.28 Total: -58.70 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Atomic # 16 Polarization: -11.16 SS G_CDS: -1.07 Total: -12.23 kcal Total: -67.13 4.71 -62.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260577567.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.386 kcal (2) G-P(sol) polarization free energy of solvation -67.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds