Wall clock time and date at job start Mon Mar 30 2020 02:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46973 * 2 1 4 4 C 1.52996 * 109.46909 * 119.99649 * 2 1 3 5 5 C 1.50702 * 109.47159 * 294.99773 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99985 * 180.27663 * 7 5 4 9 9 Si 1.86800 * 119.99777 * 0.28166 * 7 5 4 10 10 H 1.48498 * 109.47109 * 89.99834 * 9 7 5 11 11 H 1.48507 * 109.46754 * 209.99574 * 9 7 5 12 12 H 1.48498 * 109.47278 * 329.99405 * 9 7 5 13 13 C 1.52996 * 109.46928 * 239.99437 * 2 1 3 14 14 H 1.08997 * 109.57827 * 300.25944 * 13 2 1 15 15 C 1.53098 * 109.57354 * 60.64757 * 13 2 1 16 16 C 1.52583 * 109.95617 * 182.82797 * 15 13 2 17 17 C 1.52577 * 110.72780 * 289.32674 * 16 15 13 18 18 C 1.53097 * 109.95984 * 70.67400 * 17 16 15 19 19 S 1.81747 * 109.57334 * 179.97438 * 13 2 1 20 20 H 1.09004 * 109.46896 * 300.00441 * 1 2 3 21 21 H 1.09001 * 109.46930 * 60.00301 * 1 2 3 22 22 H 1.08999 * 109.46998 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47066 * 174.99977 * 4 2 1 24 24 H 1.08994 * 109.47405 * 54.99807 * 4 2 1 25 25 H 0.96996 * 119.99730 * 180.02562 * 8 7 5 26 26 H 1.08997 * 109.39053 * 302.97618 * 15 13 2 27 27 H 1.08999 * 109.39336 * 62.67850 * 15 13 2 28 28 H 1.08999 * 109.23231 * 169.00061 * 16 15 13 29 29 H 1.09000 * 109.19026 * 49.62247 * 16 15 13 30 30 H 1.08999 * 109.38795 * 310.52504 * 17 16 15 31 31 H 1.09003 * 109.31073 * 190.77073 * 17 16 15 32 32 H 1.08993 * 109.57833 * 177.17119 * 18 17 16 33 33 H 1.08994 * 109.68325 * 56.84552 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6414 0.0572 2.4766 6 1 1.0800 0.9744 2.3757 7 6 1.9879 -0.4047 3.7287 8 7 1.6353 0.2717 4.8000 9 14 2.9582 -1.9913 3.9032 10 1 4.4116 -1.6872 3.8857 11 1 2.6054 -2.6485 5.1874 12 1 2.6289 -2.8996 2.7755 13 6 2.0400 -0.7214 -1.2491 14 1 1.6738 -1.7480 -1.2531 15 6 1.5443 0.0078 -2.5008 16 6 1.9892 -0.7439 -3.7519 17 6 3.4957 -0.6119 -3.9541 18 6 4.2390 -1.4196 -2.8868 19 16 3.8575 -0.7223 -1.2524 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 3.1264 -0.7994 1.2056 24 1 1.6054 -1.7196 1.2953 25 1 1.8794 -0.0531 5.6807 26 1 0.4560 0.0635 -2.4799 27 1 1.9565 1.0166 -2.5190 28 1 1.4732 -0.3335 -4.6198 29 1 1.7322 -1.7980 -3.6469 30 1 3.7805 0.4374 -3.8774 31 1 3.7611 -0.9876 -4.9423 32 1 5.3124 -1.3619 -3.0669 33 1 3.9178 -2.4605 -2.9243 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260577571.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:08 Heat of formation + Delta-G solvation = -35.062051 kcal Electronic energy + Delta-G solvation = -12759.132220 eV Core-core repulsion = 10716.614437 eV Total energy + Delta-G solvation = -2042.517783 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -37.46069 -35.14560 -32.35335 -30.16067 -27.60729 -26.51605 -24.05849 -21.76108 -20.53043 -19.14158 -16.98972 -16.36673 -14.98332 -14.65037 -14.21365 -13.68365 -13.46225 -13.37283 -12.78471 -12.70685 -12.29860 -11.77679 -11.51757 -11.32058 -11.02251 -10.95520 -10.80528 -10.54400 -10.14519 -10.04630 -9.65773 -9.51575 -9.05946 -9.01795 -8.45319 -7.25280 -5.97409 -3.93850 2.09796 2.94193 3.38656 3.44932 3.50914 4.53289 4.69578 4.79310 4.92366 5.12416 5.32273 5.36815 5.40028 5.57561 5.66701 5.77641 5.84883 5.93242 5.99811 6.05994 6.16683 6.17102 6.33107 6.41339 6.78784 6.93886 7.04138 7.38605 7.51652 7.87238 8.60576 9.07316 9.66096 11.15908 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.042693 B = 0.008956 C = 0.007844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.690602 B = 3125.528465 C = 3568.924203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.060 4.060 3 H 0.071 0.929 4 C -0.010 4.010 5 C -0.513 4.513 6 H 0.073 0.927 7 C 0.066 3.934 8 N -0.906 5.906 9 Si 0.876 3.124 10 H -0.276 1.276 11 H -0.290 1.290 12 H -0.265 1.265 13 C -0.040 4.040 14 H 0.080 0.920 15 C -0.120 4.120 16 C -0.128 4.128 17 C -0.119 4.119 18 C -0.098 4.098 19 S -0.250 6.250 20 H 0.071 0.929 21 H 0.038 0.962 22 H 0.045 0.955 23 H 0.024 0.976 24 H 0.014 0.986 25 H 0.262 0.738 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.496 -3.096 -17.028 17.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.079 4.079 3 H 0.089 0.911 4 C -0.048 4.048 5 C -0.551 4.551 6 H 0.091 0.909 7 C -0.134 4.134 8 N -0.545 5.545 9 Si 0.704 3.296 10 H -0.202 1.202 11 H -0.216 1.216 12 H -0.189 1.189 13 C -0.169 4.169 14 H 0.098 0.902 15 C -0.159 4.159 16 C -0.166 4.166 17 C -0.158 4.158 18 C -0.246 4.246 19 S -0.022 6.022 20 H 0.090 0.910 21 H 0.057 0.943 22 H 0.064 0.936 23 H 0.042 0.958 24 H 0.033 0.967 25 H 0.071 0.929 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.115 0.885 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.256 -2.782 -16.043 16.438 hybrid contribution -0.232 -1.320 -0.658 1.493 sum 2.024 -4.102 -16.701 17.316 Atomic orbital electron populations 1.21794 0.95025 1.01101 1.01139 1.20924 0.95451 0.99516 0.92045 0.91083 1.19689 0.96380 0.95839 0.92867 1.21128 1.35403 1.09411 0.89144 0.90913 1.24997 0.95602 0.96907 0.95924 1.69916 1.47278 1.39374 0.97966 0.86825 0.80891 0.84587 0.77346 1.20209 1.21609 1.18932 1.23466 0.91669 1.02643 0.99111 0.90153 1.21877 1.01599 0.99763 0.92661 1.21540 0.95699 1.00922 0.98427 1.21694 0.95249 1.00982 0.97853 1.23467 1.03484 1.01670 0.95971 1.87350 1.09626 1.84538 1.20646 0.90959 0.94304 0.93594 0.95762 0.96731 0.92877 0.90543 0.90823 0.91585 0.92099 0.90779 0.91654 0.88490 0.90526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 8.67 37.16 0.32 -2.06 16 2 C -0.06 -1.19 1.93 -90.62 -0.17 -1.36 16 3 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 4 C -0.01 -0.25 3.37 -27.88 -0.09 -0.34 16 5 C -0.51 -14.72 8.96 -34.44 -0.31 -15.02 16 6 H 0.07 2.22 7.30 -52.49 -0.38 1.84 16 7 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 8 N -0.91 -28.38 13.96 55.43 0.77 -27.61 16 9 Si 0.88 22.52 27.47 -169.99 -4.67 17.85 16 10 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 11 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 12 H -0.26 -6.59 6.54 56.52 0.37 -6.22 16 13 C -0.04 -0.67 2.13 -26.68 -0.06 -0.72 16 14 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 15 C -0.12 -1.59 4.78 -26.89 -0.13 -1.72 16 16 C -0.13 -1.41 5.61 -27.16 -0.15 -1.56 16 17 C -0.12 -1.27 5.75 -26.90 -0.15 -1.43 16 18 C -0.10 -1.22 6.46 37.21 0.24 -0.98 16 19 S -0.25 -4.30 20.15 -107.50 -2.17 -6.47 16 20 H 0.07 1.47 6.95 -51.93 -0.36 1.10 16 21 H 0.04 0.58 6.39 -51.93 -0.33 0.25 16 22 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 23 H 0.02 0.61 6.17 -51.93 -0.32 0.29 16 24 H 0.01 0.36 7.19 -51.93 -0.37 -0.01 16 25 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 26 H 0.08 0.95 6.30 -51.93 -0.33 0.62 16 27 H 0.07 1.00 8.06 -51.93 -0.42 0.58 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 30 H 0.07 0.83 8.06 -51.93 -0.42 0.41 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 265.26 15.07 4.00 4.00 Total: -1.00 -30.66 265.26 -8.15 -38.81 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: -5.48 Total: -3.27 kcal Atomic # 6 Polarization: -22.72 SS G_CDS: -0.60 Total: -23.32 kcal Atomic # 7 Polarization: -28.38 SS G_CDS: 0.77 Total: -27.61 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.67 Total: 17.85 kcal Atomic # 16 Polarization: -4.30 SS G_CDS: -2.17 Total: -6.47 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.66 -8.15 -38.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260577571.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.749 kcal (2) G-P(sol) polarization free energy of solvation -30.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds