Wall clock time and date at job start Mon Mar 30 2020 02:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46973 * 2 1 4 4 C 1.52996 * 109.46909 * 119.99649 * 2 1 3 5 5 C 1.50702 * 109.47159 * 294.99773 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99985 * 180.27663 * 7 5 4 9 9 Si 1.86800 * 119.99777 * 0.28166 * 7 5 4 10 10 H 1.48498 * 109.47109 * 89.99834 * 9 7 5 11 11 H 1.48507 * 109.46754 * 209.99574 * 9 7 5 12 12 H 1.48498 * 109.47278 * 329.99405 * 9 7 5 13 13 C 1.52996 * 109.46928 * 239.99437 * 2 1 3 14 14 H 1.08997 * 109.57827 * 300.25944 * 13 2 1 15 15 C 1.53098 * 109.57354 * 60.64757 * 13 2 1 16 16 C 1.52583 * 109.95617 * 182.82797 * 15 13 2 17 17 C 1.52577 * 110.72780 * 289.32674 * 16 15 13 18 18 C 1.53097 * 109.95984 * 70.67400 * 17 16 15 19 19 S 1.81747 * 109.57334 * 179.97438 * 13 2 1 20 20 H 1.09004 * 109.46896 * 300.00441 * 1 2 3 21 21 H 1.09001 * 109.46930 * 60.00301 * 1 2 3 22 22 H 1.08999 * 109.46998 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47066 * 174.99977 * 4 2 1 24 24 H 1.08994 * 109.47405 * 54.99807 * 4 2 1 25 25 H 0.96996 * 119.99730 * 180.02562 * 8 7 5 26 26 H 1.08997 * 109.39053 * 302.97618 * 15 13 2 27 27 H 1.08999 * 109.39336 * 62.67850 * 15 13 2 28 28 H 1.08999 * 109.23231 * 169.00061 * 16 15 13 29 29 H 1.09000 * 109.19026 * 49.62247 * 16 15 13 30 30 H 1.08999 * 109.38795 * 310.52504 * 17 16 15 31 31 H 1.09003 * 109.31073 * 190.77073 * 17 16 15 32 32 H 1.08993 * 109.57833 * 177.17119 * 18 17 16 33 33 H 1.08994 * 109.68325 * 56.84552 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6414 0.0572 2.4766 6 1 1.0800 0.9744 2.3757 7 6 1.9879 -0.4047 3.7287 8 7 1.6353 0.2717 4.8000 9 14 2.9582 -1.9913 3.9032 10 1 4.4116 -1.6872 3.8857 11 1 2.6054 -2.6485 5.1874 12 1 2.6289 -2.8996 2.7755 13 6 2.0400 -0.7214 -1.2491 14 1 1.6738 -1.7480 -1.2531 15 6 1.5443 0.0078 -2.5008 16 6 1.9892 -0.7439 -3.7519 17 6 3.4957 -0.6119 -3.9541 18 6 4.2390 -1.4196 -2.8868 19 16 3.8575 -0.7223 -1.2524 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 3.1264 -0.7994 1.2056 24 1 1.6054 -1.7196 1.2953 25 1 1.8794 -0.0531 5.6807 26 1 0.4560 0.0635 -2.4799 27 1 1.9565 1.0166 -2.5190 28 1 1.4732 -0.3335 -4.6198 29 1 1.7322 -1.7980 -3.6469 30 1 3.7805 0.4374 -3.8774 31 1 3.7611 -0.9876 -4.9423 32 1 5.3124 -1.3619 -3.0669 33 1 3.9178 -2.4605 -2.9243 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260577571.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:08 Heat of formation + Delta-G solvation = -52.576602 kcal Electronic energy + Delta-G solvation = -12759.891708 eV Core-core repulsion = 10716.614437 eV Total energy + Delta-G solvation = -2043.277271 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.72170 -36.50476 -34.45090 -31.53147 -29.32315 -27.76347 -25.60331 -23.27922 -21.54281 -20.76220 -19.01101 -17.78314 -16.44615 -15.95460 -15.85580 -15.06699 -14.87119 -14.58153 -14.29334 -14.04280 -13.92272 -13.42621 -12.99487 -12.68574 -12.47419 -12.34300 -12.15425 -11.87058 -11.78075 -11.64770 -11.31448 -11.23824 -10.94928 -10.75683 -10.31930 -8.58716 -8.27944 -6.28911 0.90129 1.33609 1.34623 1.46938 1.77262 2.36053 3.07904 3.68664 3.84539 3.92140 4.07527 4.23293 4.29379 4.38654 4.57278 4.61787 4.70422 4.78429 4.85269 5.03819 5.05829 5.08930 5.14715 5.16334 5.31083 5.39993 5.40555 5.50433 5.66054 5.70821 6.31443 6.77519 7.34323 8.88667 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.042693 B = 0.008956 C = 0.007844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.690602 B = 3125.528465 C = 3568.924203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.057 4.057 3 H 0.051 0.949 4 C -0.004 4.004 5 C -0.517 4.517 6 H 0.038 0.962 7 C 0.006 3.994 8 N -0.951 5.951 9 Si 0.941 3.059 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.250 1.250 13 C -0.024 4.024 14 H 0.083 0.917 15 C -0.116 4.116 16 C -0.125 4.125 17 C -0.117 4.117 18 C -0.076 4.076 19 S -0.332 6.332 20 H 0.039 0.961 21 H 0.074 0.926 22 H 0.054 0.946 23 H 0.017 0.983 24 H 0.013 0.987 25 H 0.265 0.735 26 H 0.088 0.912 27 H 0.066 0.934 28 H 0.089 0.911 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.110 0.890 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.785 -4.706 -19.839 20.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.077 4.077 3 H 0.070 0.930 4 C -0.041 4.041 5 C -0.555 4.555 6 H 0.056 0.944 7 C -0.191 4.191 8 N -0.593 5.593 9 Si 0.766 3.234 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.174 1.174 13 C -0.152 4.152 14 H 0.101 0.899 15 C -0.155 4.155 16 C -0.162 4.162 17 C -0.155 4.155 18 C -0.224 4.224 19 S -0.104 6.104 20 H 0.058 0.942 21 H 0.093 0.907 22 H 0.073 0.927 23 H 0.036 0.964 24 H 0.031 0.969 25 H 0.073 0.927 26 H 0.107 0.893 27 H 0.085 0.915 28 H 0.108 0.892 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.114 0.886 32 H 0.128 0.872 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.536 -4.390 -18.872 19.541 hybrid contribution -0.324 -0.748 0.181 0.835 sum 2.212 -5.139 -18.690 19.510 Atomic orbital electron populations 1.21720 0.93697 1.01686 1.01341 1.20782 0.96580 0.98294 0.92035 0.93004 1.19584 0.95982 0.95430 0.93140 1.21458 1.34340 1.08579 0.91149 0.94394 1.25900 0.96897 1.00635 0.95618 1.70056 1.49077 1.41504 0.98627 0.85783 0.79251 0.80448 0.77968 1.19776 1.20756 1.17380 1.23284 0.90609 1.02542 0.98787 0.89914 1.21856 1.02150 0.99317 0.92163 1.21533 0.95990 1.00906 0.97771 1.21700 0.94876 1.00478 0.98468 1.23546 1.04581 1.01903 0.92384 1.87575 1.11265 1.85473 1.26111 0.94188 0.90692 0.92736 0.96444 0.96855 0.92661 0.89339 0.91479 0.89198 0.91640 0.91366 0.88618 0.87191 0.89542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.47 8.67 71.98 0.62 -3.84 16 2 C -0.06 -2.28 1.93 -10.79 -0.02 -2.30 16 3 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 4 C 0.00 -0.19 3.37 29.85 0.10 -0.09 16 5 C -0.52 -30.68 8.96 25.60 0.23 -30.45 16 6 H 0.04 2.44 7.30 -2.91 -0.02 2.42 16 7 C 0.01 0.35 5.47 84.66 0.46 0.82 16 8 N -0.95 -61.36 13.96 21.45 0.30 -61.06 16 9 Si 0.94 46.87 27.47 68.60 1.88 48.75 16 10 H -0.27 -13.31 7.11 99.48 0.71 -12.60 16 11 H -0.28 -13.57 7.11 99.48 0.71 -12.87 16 12 H -0.25 -11.75 6.54 99.48 0.65 -11.10 16 13 C -0.02 -0.75 2.13 30.63 0.07 -0.68 16 14 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 15 C -0.12 -2.74 4.78 30.49 0.15 -2.60 16 16 C -0.12 -2.21 5.61 30.32 0.17 -2.04 16 17 C -0.12 -2.03 5.75 30.49 0.18 -1.85 16 18 C -0.08 -1.66 6.46 72.01 0.46 -1.20 16 19 S -0.33 -11.08 20.15 -56.49 -1.14 -12.22 16 20 H 0.04 1.66 6.95 -2.38 -0.02 1.64 16 21 H 0.07 2.09 6.39 -2.39 -0.02 2.08 16 22 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.02 0.88 6.17 -2.38 -0.01 0.87 16 24 H 0.01 0.65 7.19 -2.39 -0.02 0.63 16 25 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 26 H 0.09 1.88 6.30 -2.39 -0.02 1.86 16 27 H 0.07 1.69 8.06 -2.39 -0.02 1.67 16 28 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.06 1.14 8.08 -2.39 -0.02 1.12 16 30 H 0.07 1.30 8.06 -2.39 -0.02 1.29 16 31 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.09 1.74 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -68.27 265.26 4.46 -63.80 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: 1.00 Total: 4.95 kcal Atomic # 6 Polarization: -46.65 SS G_CDS: 2.42 Total: -44.23 kcal Atomic # 7 Polarization: -61.36 SS G_CDS: 0.30 Total: -61.06 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 1.88 Total: 48.75 kcal Atomic # 16 Polarization: -11.08 SS G_CDS: -1.14 Total: -12.22 kcal Total: -68.27 4.46 -63.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260577571.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.228 kcal (2) G-P(sol) polarization free energy of solvation -68.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds