Wall clock time and date at job start Mon Mar 30 2020 02:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46641 * 2 1 4 4 C 1.53000 * 109.46979 * 240.00276 * 2 1 3 5 5 C 1.50697 * 109.47442 * 65.00062 * 4 2 1 6 6 H 1.08005 * 119.99934 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99913 * 180.02562 * 5 4 2 8 8 N 1.31505 * 120.00233 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99595 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47398 * 60.00011 * 9 7 5 11 11 H 1.48503 * 109.46812 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47224 * 299.99675 * 9 7 5 13 13 C 1.52992 * 109.47141 * 119.99692 * 2 1 3 14 14 H 1.09001 * 109.57384 * 64.75129 * 13 2 1 15 15 C 1.53096 * 109.58004 * 304.36107 * 13 2 1 16 16 C 1.52579 * 109.95726 * 177.16795 * 15 13 2 17 17 C 1.52582 * 110.72851 * 70.67504 * 16 15 13 18 18 C 1.53104 * 109.95444 * 289.32454 * 17 16 15 19 19 S 1.81745 * 109.57540 * 185.00157 * 13 2 1 20 20 H 1.09001 * 109.47346 * 60.00339 * 1 2 3 21 21 H 1.09003 * 109.46641 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47309 * 299.99885 * 1 2 3 23 23 H 1.09002 * 109.46418 * 184.99804 * 4 2 1 24 24 H 1.09001 * 109.47011 * 304.99289 * 4 2 1 25 25 H 0.97005 * 120.00022 * 180.02562 * 8 7 5 26 26 H 1.08999 * 109.38963 * 297.31853 * 15 13 2 27 27 H 1.09001 * 109.39187 * 57.11923 * 15 13 2 28 28 H 1.09003 * 109.22921 * 190.99779 * 16 15 13 29 29 H 1.09002 * 109.22799 * 310.39430 * 16 15 13 30 30 H 1.09002 * 109.39340 * 169.17777 * 17 16 15 31 31 H 1.08992 * 109.39151 * 49.47084 * 17 16 15 32 32 H 1.08998 * 109.57711 * 303.21536 * 18 17 16 33 33 H 1.08994 * 109.57344 * 182.82798 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6414 0.0571 -2.4766 6 1 1.0800 0.9743 -2.3757 7 6 1.9924 -0.4022 -3.7283 8 7 2.6755 -1.5192 -3.8512 9 14 1.4976 0.5623 -5.2496 10 1 2.0897 1.9227 -5.1876 11 1 1.9927 -0.1377 -6.4622 12 1 0.0176 0.6687 -5.3086 13 6 2.0400 -0.7211 1.2492 14 1 1.7487 -1.7708 1.2094 15 6 1.4435 -0.0674 2.4985 16 6 1.8907 -0.8236 3.7459 17 6 3.3746 -0.5917 4.0151 18 6 4.2161 -1.3120 2.9582 19 16 3.8513 -0.5946 1.3286 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 3.1264 -0.7993 -1.2056 24 1 1.6055 -1.7198 -1.2952 25 1 2.9228 -1.8421 -4.7319 26 1 1.7811 0.9670 2.5618 27 1 0.3556 -0.0897 2.4342 28 1 1.3122 -0.4773 4.6024 29 1 1.7150 -1.8897 3.6018 30 1 3.6277 -0.9765 5.0030 31 1 3.5862 0.4769 3.9794 32 1 3.9672 -2.3732 2.9541 33 1 5.2746 -1.1841 3.1848 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260577572.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:09 Heat of formation + Delta-G solvation = -37.697141 kcal Electronic energy + Delta-G solvation = -12700.876884 eV Core-core repulsion = 10658.244835 eV Total energy + Delta-G solvation = -2042.632049 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -37.36684 -35.01048 -32.38587 -29.92926 -27.08706 -26.39401 -24.11885 -21.97769 -20.45016 -19.08857 -16.73375 -16.07047 -14.83536 -14.63282 -14.36861 -13.64241 -13.35874 -13.09568 -12.83654 -12.63269 -11.96674 -11.53571 -11.36369 -11.21615 -10.93136 -10.85636 -10.74395 -10.51545 -10.31036 -9.94613 -9.87317 -9.30324 -8.95502 -8.85928 -8.26657 -7.10130 -5.91301 -3.92762 2.22462 3.07278 3.37653 3.42071 3.44294 4.51544 4.77997 4.87310 5.01759 5.22421 5.42044 5.43937 5.49876 5.66937 5.76482 5.87656 5.93465 6.00854 6.08277 6.13511 6.26121 6.27613 6.41459 6.49775 6.94149 7.05613 7.16835 7.77828 7.93277 8.09751 8.50559 9.13170 9.69678 11.19871 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.051995 B = 0.007683 C = 0.007015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.387538 B = 3643.721624 C = 3990.611702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.069 4.069 3 H 0.065 0.935 4 C 0.027 3.973 5 C -0.516 4.516 6 H 0.054 0.946 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C -0.038 4.038 14 H 0.080 0.920 15 C -0.121 4.121 16 C -0.128 4.128 17 C -0.119 4.119 18 C -0.099 4.099 19 S -0.245 6.245 20 H 0.066 0.934 21 H 0.045 0.955 22 H 0.036 0.964 23 H 0.030 0.970 24 H 0.014 0.986 25 H 0.260 0.740 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.066 1.146 14.440 14.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.089 4.089 3 H 0.083 0.917 4 C -0.011 4.011 5 C -0.554 4.554 6 H 0.072 0.928 7 C -0.144 4.144 8 N -0.533 5.533 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.204 1.204 13 C -0.167 4.167 14 H 0.098 0.902 15 C -0.160 4.160 16 C -0.166 4.166 17 C -0.158 4.158 18 C -0.247 4.247 19 S -0.016 6.016 20 H 0.085 0.915 21 H 0.064 0.936 22 H 0.055 0.945 23 H 0.048 0.952 24 H 0.032 0.968 25 H 0.069 0.931 26 H 0.090 0.910 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.227 1.417 13.551 13.627 hybrid contribution -0.998 -0.135 -0.047 1.008 sum -1.224 1.282 13.504 13.620 Atomic orbital electron populations 1.21798 0.95534 1.01013 1.00591 1.21115 0.95068 0.99451 0.93235 0.91701 1.19202 0.97037 0.95066 0.89751 1.21193 1.34835 1.08284 0.91098 0.92758 1.24997 0.95335 0.95072 0.98980 1.69963 1.38820 1.21139 1.23388 0.86721 0.78788 0.80201 0.82651 1.20308 1.21367 1.20357 1.23419 0.91590 1.02858 0.98788 0.90176 1.21906 1.01152 1.00016 0.92885 1.21545 0.95851 1.00857 0.98351 1.21697 0.94943 1.01276 0.97845 1.23463 1.03000 1.02076 0.96153 1.87377 1.10317 1.82457 1.21467 0.91528 0.93553 0.94501 0.95184 0.96771 0.93071 0.91007 0.90606 0.91720 0.92068 0.91744 0.90910 0.90509 0.88549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 8.54 37.16 0.32 -2.09 16 2 C -0.07 -1.43 1.93 -90.62 -0.17 -1.60 16 3 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 4 C 0.03 0.70 4.35 -27.88 -0.12 0.57 16 5 C -0.52 -14.68 8.41 -34.44 -0.29 -14.97 16 6 H 0.05 1.49 7.06 -52.48 -0.37 1.12 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 8 N -0.89 -27.40 13.29 55.43 0.74 -26.66 16 9 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 C -0.04 -0.67 2.13 -26.69 -0.06 -0.72 16 14 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 15 C -0.12 -1.68 4.66 -26.90 -0.13 -1.81 16 16 C -0.13 -1.50 5.61 -27.16 -0.15 -1.66 16 17 C -0.12 -1.35 5.75 -26.89 -0.15 -1.51 16 18 C -0.10 -1.31 6.45 37.21 0.24 -1.07 16 19 S -0.24 -4.45 20.44 -107.50 -2.20 -6.65 16 20 H 0.07 1.32 6.95 -51.93 -0.36 0.96 16 21 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 22 H 0.04 0.56 6.30 -51.93 -0.33 0.23 16 23 H 0.03 0.85 6.98 -51.93 -0.36 0.49 16 24 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 26 H 0.07 1.02 8.06 -51.93 -0.42 0.60 16 27 H 0.08 1.00 6.19 -51.93 -0.32 0.67 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.72 8.08 -51.93 -0.42 0.31 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.85 8.06 -51.93 -0.42 0.44 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 269.00 15.07 4.05 4.05 Total: -1.00 -30.25 269.00 -8.56 -38.80 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: -5.52 Total: -3.24 kcal Atomic # 6 Polarization: -22.67 SS G_CDS: -0.61 Total: -23.29 kcal Atomic # 7 Polarization: -27.40 SS G_CDS: 0.74 Total: -26.66 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: -4.45 SS G_CDS: -2.20 Total: -6.65 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.25 -8.56 -38.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260577572.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.107 kcal (2) G-P(sol) polarization free energy of solvation -30.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds