Wall clock time and date at job start Mon Mar 30 2020 02:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46641 * 2 1 4 4 C 1.53000 * 109.46979 * 240.00276 * 2 1 3 5 5 C 1.50697 * 109.47442 * 65.00062 * 4 2 1 6 6 H 1.08005 * 119.99934 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99913 * 180.02562 * 5 4 2 8 8 N 1.31505 * 120.00233 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99595 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47398 * 60.00011 * 9 7 5 11 11 H 1.48503 * 109.46812 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47224 * 299.99675 * 9 7 5 13 13 C 1.52992 * 109.47141 * 119.99692 * 2 1 3 14 14 H 1.09001 * 109.57384 * 64.75129 * 13 2 1 15 15 C 1.53096 * 109.58004 * 304.36107 * 13 2 1 16 16 C 1.52579 * 109.95726 * 177.16795 * 15 13 2 17 17 C 1.52582 * 110.72851 * 70.67504 * 16 15 13 18 18 C 1.53104 * 109.95444 * 289.32454 * 17 16 15 19 19 S 1.81745 * 109.57540 * 185.00157 * 13 2 1 20 20 H 1.09001 * 109.47346 * 60.00339 * 1 2 3 21 21 H 1.09003 * 109.46641 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47309 * 299.99885 * 1 2 3 23 23 H 1.09002 * 109.46418 * 184.99804 * 4 2 1 24 24 H 1.09001 * 109.47011 * 304.99289 * 4 2 1 25 25 H 0.97005 * 120.00022 * 180.02562 * 8 7 5 26 26 H 1.08999 * 109.38963 * 297.31853 * 15 13 2 27 27 H 1.09001 * 109.39187 * 57.11923 * 15 13 2 28 28 H 1.09003 * 109.22921 * 190.99779 * 16 15 13 29 29 H 1.09002 * 109.22799 * 310.39430 * 16 15 13 30 30 H 1.09002 * 109.39340 * 169.17777 * 17 16 15 31 31 H 1.08992 * 109.39151 * 49.47084 * 17 16 15 32 32 H 1.08998 * 109.57711 * 303.21536 * 18 17 16 33 33 H 1.08994 * 109.57344 * 182.82798 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6414 0.0571 -2.4766 6 1 1.0800 0.9743 -2.3757 7 6 1.9924 -0.4022 -3.7283 8 7 2.6755 -1.5192 -3.8512 9 14 1.4976 0.5623 -5.2496 10 1 2.0897 1.9227 -5.1876 11 1 1.9927 -0.1377 -6.4622 12 1 0.0176 0.6687 -5.3086 13 6 2.0400 -0.7211 1.2492 14 1 1.7487 -1.7708 1.2094 15 6 1.4435 -0.0674 2.4985 16 6 1.8907 -0.8236 3.7459 17 6 3.3746 -0.5917 4.0151 18 6 4.2161 -1.3120 2.9582 19 16 3.8513 -0.5946 1.3286 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 3.1264 -0.7993 -1.2056 24 1 1.6055 -1.7198 -1.2952 25 1 2.9228 -1.8421 -4.7319 26 1 1.7811 0.9670 2.5618 27 1 0.3556 -0.0897 2.4342 28 1 1.3122 -0.4773 4.6024 29 1 1.7150 -1.8897 3.6018 30 1 3.6277 -0.9765 5.0030 31 1 3.5862 0.4769 3.9794 32 1 3.9672 -2.3732 2.9541 33 1 5.2746 -1.1841 3.1848 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260577572.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:09 Heat of formation + Delta-G solvation = -54.335073 kcal Electronic energy + Delta-G solvation = -12701.598359 eV Core-core repulsion = 10658.244835 eV Total energy + Delta-G solvation = -2043.353524 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.69599 -36.45794 -34.42862 -31.31708 -28.87678 -27.75519 -25.80837 -23.52026 -21.51592 -20.75022 -18.58861 -17.73430 -16.58061 -15.98789 -15.79124 -14.92577 -14.70630 -14.51030 -14.38793 -13.97890 -13.67508 -13.23876 -12.88861 -12.70113 -12.57718 -12.29528 -12.19421 -12.05693 -11.77883 -11.67514 -11.24392 -11.12417 -10.87360 -10.54242 -10.28933 -8.55366 -8.15418 -6.25216 0.92760 1.38936 1.42434 1.49873 1.79956 2.42327 3.17449 3.72081 3.86255 3.92786 4.09746 4.25037 4.32126 4.40721 4.62476 4.65760 4.71585 4.80041 4.88724 5.05328 5.09535 5.13809 5.15709 5.22439 5.38385 5.41253 5.47160 5.58325 5.82151 5.90462 6.29535 6.91097 7.42332 8.96283 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.051995 B = 0.007683 C = 0.007015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.387538 B = 3643.721624 C = 3990.611702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.063 4.063 3 H 0.054 0.946 4 C 0.035 3.965 5 C -0.533 4.533 6 H 0.061 0.939 7 C -0.002 4.002 8 N -0.934 5.934 9 Si 0.961 3.039 10 H -0.269 1.269 11 H -0.285 1.285 12 H -0.264 1.264 13 C -0.022 4.022 14 H 0.069 0.931 15 C -0.114 4.114 16 C -0.126 4.126 17 C -0.115 4.115 18 C -0.077 4.077 19 S -0.333 6.333 20 H 0.048 0.952 21 H 0.045 0.955 22 H 0.076 0.924 23 H -0.002 1.002 24 H -0.016 1.016 25 H 0.261 0.739 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.159 1.997 16.223 16.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.082 4.082 3 H 0.072 0.928 4 C -0.002 4.002 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.200 4.200 8 N -0.575 5.575 9 Si 0.785 3.215 10 H -0.194 1.194 11 H -0.210 1.210 12 H -0.189 1.189 13 C -0.151 4.151 14 H 0.088 0.912 15 C -0.153 4.153 16 C -0.163 4.163 17 C -0.154 4.154 18 C -0.225 4.225 19 S -0.105 6.105 20 H 0.067 0.933 21 H 0.064 0.936 22 H 0.095 0.905 23 H 0.016 0.984 24 H 0.002 0.998 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.108 0.892 28 H 0.111 0.889 29 H 0.079 0.921 30 H 0.115 0.885 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.334 2.278 15.348 15.574 hybrid contribution -0.596 -0.447 -0.557 0.931 sum -1.930 1.831 14.791 15.028 Atomic orbital electron populations 1.21729 0.93518 1.01334 1.01684 1.20922 0.96681 0.98240 0.92359 0.92795 1.19029 0.94939 0.93981 0.92283 1.21638 1.34605 1.08606 0.92217 0.92117 1.25960 0.95247 0.96091 1.02665 1.70117 1.40166 1.22990 1.24225 0.85569 0.79035 0.78697 0.78165 1.19433 1.21013 1.18923 1.23256 0.90521 1.02066 0.99224 0.91248 1.21874 1.01610 0.99868 0.91964 1.21547 0.96338 1.00524 0.97897 1.21700 0.94335 1.01019 0.98318 1.23546 1.04350 1.01998 0.92624 1.87626 1.12345 1.83419 1.27106 0.93280 0.93590 0.90518 0.98414 0.99805 0.93019 0.91075 0.89190 0.88892 0.92098 0.88540 0.91112 0.90025 0.87145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.46 8.54 71.98 0.61 -3.85 16 2 C -0.06 -2.63 1.93 -10.79 -0.02 -2.65 16 3 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 4 C 0.03 1.91 4.35 29.85 0.13 2.04 16 5 C -0.53 -31.08 8.41 25.60 0.22 -30.87 16 6 H 0.06 3.38 7.06 -2.91 -0.02 3.36 16 7 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 8 N -0.93 -59.11 13.29 21.45 0.28 -58.82 16 9 Si 0.96 45.62 29.54 68.60 2.03 47.64 16 10 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 11 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 12 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16 13 C -0.02 -0.78 2.13 30.62 0.07 -0.71 16 14 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 15 C -0.11 -2.91 4.66 30.49 0.14 -2.77 16 16 C -0.13 -2.48 5.61 30.32 0.17 -2.31 16 17 C -0.12 -2.22 5.75 30.49 0.18 -2.05 16 18 C -0.08 -1.92 6.45 72.02 0.46 -1.46 16 19 S -0.33 -12.35 20.44 -56.49 -1.15 -13.51 16 20 H 0.05 1.92 6.95 -2.39 -0.02 1.90 16 21 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 22 H 0.08 2.14 6.30 -2.39 -0.02 2.12 16 23 H 0.00 -0.15 6.98 -2.39 -0.02 -0.16 16 24 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 25 H 0.26 15.57 8.31 -92.70 -0.77 14.80 16 26 H 0.07 1.84 8.06 -2.39 -0.02 1.82 16 27 H 0.09 2.04 6.19 -2.39 -0.01 2.03 16 28 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.06 1.24 8.08 -2.39 -0.02 1.22 16 30 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.07 1.44 8.06 -2.39 -0.02 1.42 16 32 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -67.97 269.00 4.63 -63.35 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: 1.05 Total: 5.63 kcal Atomic # 6 Polarization: -46.72 SS G_CDS: 2.42 Total: -44.30 kcal Atomic # 7 Polarization: -59.11 SS G_CDS: 0.28 Total: -58.82 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal Atomic # 16 Polarization: -12.35 SS G_CDS: -1.15 Total: -13.51 kcal Total: -67.97 4.63 -63.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260577572.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.010 kcal (2) G-P(sol) polarization free energy of solvation -67.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds