Wall clock time and date at job start Mon Mar 30 2020 02:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47052 * 2 1 4 4 C 1.52996 * 109.47441 * 120.00634 * 2 1 3 5 5 H 1.08996 * 109.47615 * 186.65305 * 4 2 1 6 6 C 1.53003 * 109.47364 * 66.65208 * 4 2 1 7 7 C 1.50702 * 109.46941 * 64.39897 * 6 4 2 8 8 H 1.07997 * 120.00050 * 3.01431 * 7 6 4 9 9 C 1.37874 * 119.99697 * 183.00698 * 7 6 4 10 10 N 1.31514 * 120.00469 * 0.02562 * 9 7 6 11 11 Si 1.86809 * 119.99906 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.46829 * 90.00124 * 11 9 7 13 13 H 1.48501 * 109.47070 * 210.00204 * 11 9 7 14 14 H 1.48500 * 109.46925 * 330.00363 * 11 9 7 15 15 C 1.53001 * 109.46996 * 306.65464 * 4 2 1 16 16 C 1.53044 * 113.14958 * 294.00966 * 15 4 2 17 17 S 1.81428 * 89.89034 * 211.85141 * 16 15 4 18 18 C 1.53041 * 113.15128 * 193.63436 * 15 4 2 19 19 H 1.08995 * 109.46671 * 305.64879 * 1 2 3 20 20 H 1.08998 * 109.47156 * 65.65227 * 1 2 3 21 21 H 1.09000 * 109.46928 * 185.65418 * 1 2 3 22 22 H 1.09010 * 109.46773 * 240.00498 * 2 1 3 23 23 H 1.09008 * 109.46930 * 166.97434 * 3 2 1 24 24 H 1.08998 * 109.47764 * 286.97671 * 3 2 1 25 25 H 1.09001 * 109.46851 * 46.98036 * 3 2 1 26 26 H 1.08998 * 109.47236 * 184.40170 * 6 4 2 27 27 H 1.09005 * 109.47124 * 304.40560 * 6 4 2 28 28 H 0.96998 * 120.00295 * 180.02562 * 10 9 7 29 29 H 1.09005 * 112.52847 * 63.81863 * 15 4 2 30 30 H 1.08997 * 113.14689 * 327.11048 * 16 15 4 31 31 H 1.08996 * 113.15242 * 96.59321 * 16 15 4 32 32 H 1.09000 * 113.14727 * 263.40292 * 18 15 4 33 33 H 1.09000 * 113.15072 * 32.88840 * 18 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7214 1.2491 5 1 3.1235 -0.6194 1.3107 6 6 1.6712 -2.2040 1.1683 7 6 2.3897 -2.8377 0.0050 8 1 3.0814 -2.2547 -0.5849 9 6 2.1642 -4.1619 -0.3059 10 7 1.3217 -4.8718 0.4122 11 14 3.0555 -4.9477 -1.7475 12 1 4.3363 -5.5339 -1.2774 13 1 2.2062 -6.0171 -2.3310 14 1 3.3322 -3.9167 -2.7798 15 6 1.3982 -0.1032 2.4928 16 6 1.8306 1.3445 2.7367 17 16 1.6740 1.0862 4.5256 18 6 2.0830 -0.5235 3.7953 19 1 -0.3632 0.5989 0.8351 20 1 -0.3633 0.4237 -0.9362 21 1 -0.3633 -1.0227 0.1013 22 1 1.8933 -0.5138 -0.8901 23 1 3.1051 1.4512 0.2316 24 1 1.8782 1.8851 -0.9828 25 1 1.5000 2.0187 0.7514 26 1 1.9650 -2.7025 2.0920 27 1 0.5947 -2.3035 1.0282 28 1 1.1634 -5.8035 0.1937 29 1 0.3166 -0.2369 2.5148 30 1 2.8544 1.5448 2.4207 31 1 1.1225 2.0749 2.3456 32 1 1.5862 -1.3575 4.2909 33 1 3.1555 -0.6831 3.6835 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260649221.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:16 Heat of formation + Delta-G solvation = -5.175613 kcal Electronic energy + Delta-G solvation = -13058.240441 eV Core-core repulsion = 11017.018631 eV Total energy + Delta-G solvation = -2041.221810 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.57941 -33.88285 -32.74956 -29.74723 -26.85211 -25.63997 -25.18752 -21.74859 -21.01774 -18.41569 -16.28955 -15.94754 -15.35356 -14.64234 -14.03733 -13.74368 -13.33192 -12.76558 -12.47237 -12.14050 -12.05476 -11.85284 -11.50869 -11.20707 -10.85648 -10.77244 -10.67102 -10.48592 -10.29861 -10.10473 -9.71607 -9.43407 -9.04858 -8.83405 -8.34290 -7.56354 -6.00796 -4.02021 2.09750 2.25585 3.30467 3.37644 3.39921 4.44476 4.76500 5.05254 5.33916 5.35589 5.53501 5.60993 5.64976 5.70040 5.71718 5.96592 6.02272 6.08117 6.18180 6.34004 6.38426 6.48029 6.69981 6.79623 6.94154 7.05656 7.20132 7.67825 7.80738 7.99496 8.41469 9.04147 9.61578 11.10248 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.037874 B = 0.008685 C = 0.007744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.121833 B = 3222.996182 C = 3615.049893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 C -0.158 4.158 4 C -0.063 4.063 5 H 0.060 0.940 6 C 0.027 3.973 7 C -0.514 4.514 8 H 0.055 0.945 9 C 0.058 3.942 10 N -0.895 5.895 11 Si 0.887 3.113 12 H -0.282 1.282 13 H -0.287 1.287 14 H -0.274 1.274 15 C -0.082 4.082 16 C -0.064 4.064 17 S -0.355 6.355 18 C -0.060 4.060 19 H 0.043 0.957 20 H 0.040 0.960 21 H 0.068 0.932 22 H 0.083 0.917 23 H 0.049 0.951 24 H 0.043 0.957 25 H 0.057 0.943 26 H 0.014 0.986 27 H 0.025 0.975 28 H 0.259 0.741 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.256 10.080 1.690 10.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.101 4.101 3 C -0.216 4.216 4 C -0.084 4.084 5 H 0.078 0.922 6 C -0.010 4.010 7 C -0.552 4.552 8 H 0.073 0.927 9 C -0.143 4.143 10 N -0.534 5.534 11 Si 0.715 3.285 12 H -0.208 1.208 13 H -0.213 1.213 14 H -0.199 1.199 15 C -0.102 4.102 16 C -0.211 4.211 17 S -0.128 6.128 18 C -0.208 4.208 19 H 0.062 0.938 20 H 0.059 0.941 21 H 0.087 0.913 22 H 0.101 0.899 23 H 0.068 0.932 24 H 0.062 0.938 25 H 0.075 0.925 26 H 0.032 0.968 27 H 0.043 0.957 28 H 0.069 0.931 29 H 0.124 0.876 30 H 0.120 0.880 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.105 10.602 3.005 11.020 hybrid contribution 0.761 -1.064 -1.655 2.109 sum 0.656 9.538 1.350 9.656 Atomic orbital electron populations 1.21885 0.96110 1.02438 0.99756 1.21016 0.95374 0.94012 0.99729 1.22281 1.00656 0.97853 1.00793 1.21313 0.98259 0.98428 0.90397 0.92152 1.19163 0.97380 0.87674 0.96787 1.21208 1.24821 0.95424 1.13770 0.92655 1.24989 0.95321 0.97498 0.96535 1.69953 1.35393 1.08462 1.39616 0.86682 0.79657 0.79184 0.83007 1.20798 1.21331 1.19923 1.22631 1.01473 0.91049 0.95022 1.24775 1.05037 1.02035 0.89271 1.88790 1.92543 1.15934 1.15552 1.24381 1.04411 0.95448 0.96546 0.93786 0.94118 0.91334 0.89876 0.93206 0.93808 0.92451 0.96817 0.95698 0.93082 0.87623 0.88038 0.88841 0.88751 0.87992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 8.40 37.16 0.31 -2.02 16 2 C -0.08 -1.39 2.58 -90.62 -0.23 -1.63 16 3 C -0.16 -2.16 7.85 37.15 0.29 -1.87 16 4 C -0.06 -1.14 1.38 -90.62 -0.13 -1.27 16 5 H 0.06 1.11 8.02 -51.93 -0.42 0.69 16 6 C 0.03 0.63 4.29 -27.88 -0.12 0.51 16 7 C -0.51 -13.51 8.25 -34.44 -0.28 -13.80 16 8 H 0.06 1.42 7.17 -52.49 -0.38 1.05 16 9 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 10 N -0.89 -25.93 13.29 55.43 0.74 -25.19 16 11 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 15 C -0.08 -1.28 2.02 -90.58 -0.18 -1.47 16 16 C -0.06 -0.87 5.16 37.18 0.19 -0.68 16 17 S -0.35 -5.51 24.80 -107.50 -2.67 -8.18 16 18 C -0.06 -0.93 7.06 37.18 0.26 -0.67 16 19 H 0.04 0.63 6.72 -51.93 -0.35 0.28 16 20 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 21 H 0.07 1.27 6.31 -51.93 -0.33 0.94 16 22 H 0.08 1.60 6.80 -51.92 -0.35 1.25 16 23 H 0.05 0.66 7.65 -51.92 -0.40 0.26 16 24 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.71 4.73 -51.93 -0.25 0.46 16 26 H 0.01 0.34 7.78 -51.93 -0.40 -0.06 16 27 H 0.02 0.62 6.33 -51.93 -0.33 0.29 16 28 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.11 1.71 6.88 -51.93 -0.36 1.35 16 30 H 0.10 1.32 7.33 -51.93 -0.38 0.94 16 31 H 0.09 1.18 6.57 -51.93 -0.34 0.84 16 32 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 33 H 0.10 1.54 8.09 -51.93 -0.42 1.12 16 LS Contribution 264.49 15.07 3.99 3.99 Total: -1.00 -27.72 264.49 -8.05 -35.77 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -5.10 Total: -1.01 kcal Atomic # 6 Polarization: -21.42 SS G_CDS: 0.02 Total: -21.40 kcal Atomic # 7 Polarization: -25.93 SS G_CDS: 0.74 Total: -25.19 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: -5.51 SS G_CDS: -2.67 Total: -8.18 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -27.72 -8.05 -35.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260649221.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.595 kcal (2) G-P(sol) polarization free energy of solvation -27.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds